HEADER SIGNALING PROTEIN 12-JUL-16 5KU7 TITLE CRYSTAL STRUCTURE OF THE TIR DOMAIN FROM THE MUSCADINIA ROTUNDIFOLIA TITLE 2 DISEASE RESISTANCE PROTEIN RPV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIR-NB-LRR TYPE RESISTANCE PROTEIN RPV1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-193; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS ROTUNDIFOLIA; SOURCE 3 ORGANISM_COMMON: MUSCADINE GRAPE; SOURCE 4 ORGANISM_TAXID: 103349; SOURCE 5 GENE: RPV1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIR DOMAIN, PLANT NLR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.WILLIAMS,D.J.ERICSSON,B.KOBE REVDAT 3 04-OCT-23 5KU7 1 REMARK REVDAT 2 01-JAN-20 5KU7 1 REMARK REVDAT 1 15-FEB-17 5KU7 0 JRNL AUTH S.J.WILLIAMS,L.YIN,G.FOLEY,L.W.CASEY,M.A.OUTRAM, JRNL AUTH 2 D.J.ERICSSON,J.LU,M.BODEN,I.B.DRY,B.KOBE JRNL TITL STRUCTURE AND FUNCTION OF THE TIR DOMAIN FROM THE GRAPE NLR JRNL TITL 2 PROTEIN RPV1. JRNL REF FRONT PLANT SCI V. 7 1850 2016 JRNL REFN ESSN 1664-462X JRNL PMID 28008335 JRNL DOI 10.3389/FPLS.2016.01850 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9514 - 5.5371 0.99 1371 153 0.1601 0.2029 REMARK 3 2 5.5371 - 4.3974 1.00 1304 144 0.1453 0.1780 REMARK 3 3 4.3974 - 3.8423 1.00 1272 142 0.1448 0.1941 REMARK 3 4 3.8423 - 3.4913 1.00 1258 139 0.1758 0.2421 REMARK 3 5 3.4913 - 3.2413 1.00 1279 142 0.1834 0.2444 REMARK 3 6 3.2413 - 3.0503 1.00 1254 140 0.1937 0.2584 REMARK 3 7 3.0503 - 2.8976 1.00 1238 137 0.2160 0.2955 REMARK 3 8 2.8976 - 2.7715 1.00 1246 138 0.2059 0.2864 REMARK 3 9 2.7715 - 2.6648 1.00 1252 140 0.2125 0.2803 REMARK 3 10 2.6648 - 2.5729 1.00 1242 138 0.2229 0.2718 REMARK 3 11 2.5729 - 2.4925 1.00 1232 137 0.2309 0.2802 REMARK 3 12 2.4925 - 2.4212 1.00 1240 138 0.2338 0.2910 REMARK 3 13 2.4212 - 2.3575 1.00 1231 137 0.2212 0.2962 REMARK 3 14 2.3575 - 2.3000 1.00 1243 138 0.2428 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2891 REMARK 3 ANGLE : 1.030 3894 REMARK 3 CHIRALITY : 0.044 400 REMARK 3 PLANARITY : 0.005 508 REMARK 3 DIHEDRAL : 13.837 1072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:68) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7273 27.2291 59.3363 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.3993 REMARK 3 T33: 0.3760 T12: -0.0139 REMARK 3 T13: -0.0256 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.0405 L22: 4.4378 REMARK 3 L33: 2.5124 L12: 0.4064 REMARK 3 L13: -0.0601 L23: 0.2331 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.1348 S13: 0.0747 REMARK 3 S21: 0.1640 S22: 0.0101 S23: -0.2717 REMARK 3 S31: -0.0009 S32: 0.3121 S33: -0.0329 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 69:141) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2129 18.7294 69.5324 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.3909 REMARK 3 T33: 0.2742 T12: 0.0450 REMARK 3 T13: 0.0004 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.0534 L22: 4.8423 REMARK 3 L33: 3.4993 L12: 0.7215 REMARK 3 L13: 0.2578 L23: -0.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.5727 S13: -0.1767 REMARK 3 S21: 0.4416 S22: -0.0664 S23: -0.2289 REMARK 3 S31: 0.2620 S32: 0.2692 S33: 0.0928 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 142:149) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1474 9.8498 74.3709 REMARK 3 T TENSOR REMARK 3 T11: 0.7029 T22: 0.7388 REMARK 3 T33: 0.7265 T12: 0.1187 REMARK 3 T13: -0.1370 T23: 0.1763 REMARK 3 L TENSOR REMARK 3 L11: 0.9729 L22: 2.0921 REMARK 3 L33: 6.6133 L12: 0.3791 REMARK 3 L13: -1.2793 L23: -3.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.3483 S12: -0.9255 S13: -0.3027 REMARK 3 S21: 0.4187 S22: -0.1768 S23: -1.2819 REMARK 3 S31: 0.1841 S32: 1.1191 S33: -0.0777 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 150:171) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6726 20.5989 68.3136 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.4173 REMARK 3 T33: 0.3795 T12: -0.0438 REMARK 3 T13: 0.0693 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 5.2249 L22: 4.6011 REMARK 3 L33: 7.2166 L12: -4.2757 REMARK 3 L13: 4.0412 L23: -4.9339 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: -0.6760 S13: -0.5562 REMARK 3 S21: 0.2545 S22: 0.3100 S23: 0.6042 REMARK 3 S31: 0.0260 S32: -0.4658 S33: -0.2020 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 172:192) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1689 37.1390 69.0303 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.2432 REMARK 3 T33: 0.3297 T12: 0.0224 REMARK 3 T13: 0.0267 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 4.6020 L22: 8.5586 REMARK 3 L33: 4.8618 L12: 3.9226 REMARK 3 L13: 3.5299 L23: 6.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.1554 S13: 0.1891 REMARK 3 S21: 0.2763 S22: -0.2264 S23: 0.2692 REMARK 3 S31: -0.2247 S32: -0.5910 S33: 0.2792 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 22:83) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2482 29.5048 43.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.3858 REMARK 3 T33: 0.3470 T12: -0.0197 REMARK 3 T13: -0.0552 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 3.0454 L22: 2.6503 REMARK 3 L33: 1.3123 L12: 1.1893 REMARK 3 L13: -0.6199 L23: 0.6378 REMARK 3 S TENSOR REMARK 3 S11: -0.1125 S12: -0.0788 S13: 0.1161 REMARK 3 S21: -0.1865 S22: 0.0010 S23: 0.2292 REMARK 3 S31: 0.0575 S32: -0.3139 S33: 0.1355 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 84:109) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6483 23.2921 33.8062 REMARK 3 T TENSOR REMARK 3 T11: 0.3857 T22: 0.6282 REMARK 3 T33: 0.4456 T12: -0.0421 REMARK 3 T13: -0.0746 T23: -0.0993 REMARK 3 L TENSOR REMARK 3 L11: 4.6855 L22: 6.2286 REMARK 3 L33: 4.5314 L12: -1.3374 REMARK 3 L13: 0.1590 L23: -0.9084 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.8127 S13: 0.0236 REMARK 3 S21: -0.4465 S22: -0.1954 S23: 0.5242 REMARK 3 S31: 0.1123 S32: -0.3397 S33: 0.1031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 110:165) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7892 17.8952 31.6441 REMARK 3 T TENSOR REMARK 3 T11: 0.5113 T22: 0.5584 REMARK 3 T33: 0.3863 T12: -0.0828 REMARK 3 T13: -0.0054 T23: -0.1778 REMARK 3 L TENSOR REMARK 3 L11: 2.1905 L22: 2.9603 REMARK 3 L33: 1.5415 L12: 0.7138 REMARK 3 L13: 0.3037 L23: 0.9172 REMARK 3 S TENSOR REMARK 3 S11: -0.2446 S12: 0.9087 S13: -0.4099 REMARK 3 S21: -0.6793 S22: 0.0882 S23: 0.1102 REMARK 3 S31: 0.2898 S32: -0.1948 S33: -0.0911 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 166:178) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8003 28.1465 45.3020 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.4080 REMARK 3 T33: 0.4567 T12: -0.0092 REMARK 3 T13: -0.0059 T23: -0.0935 REMARK 3 L TENSOR REMARK 3 L11: 6.9787 L22: 9.6552 REMARK 3 L33: 8.0593 L12: -5.2483 REMARK 3 L13: 4.0801 L23: -5.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.4196 S12: 0.8426 S13: 0.0000 REMARK 3 S21: -0.1186 S22: -0.4544 S23: -0.6451 REMARK 3 S31: 0.2113 S32: 0.5573 S33: -0.0194 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 179:188) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1090 41.9267 37.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.3642 T22: 0.3037 REMARK 3 T33: 0.3815 T12: -0.0106 REMARK 3 T13: -0.0350 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 8.1567 L22: 6.3589 REMARK 3 L33: 2.8771 L12: -0.0567 REMARK 3 L13: 0.9671 L23: -0.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.2757 S12: 1.2844 S13: 0.5596 REMARK 3 S21: -0.6613 S22: 0.2418 S23: -0.4768 REMARK 3 S31: -0.6772 S32: 0.0613 S33: -0.0843 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.947 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CSR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.1M TRIS PH 8.5 AND 2% REMARK 280 TACSIMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.55850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.92900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.55850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.92900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 ARG A 20 REMARK 465 THR A 21 REMARK 465 GLY A 193 REMARK 465 SER B 17 REMARK 465 ASN B 18 REMARK 465 ALA B 19 REMARK 465 ARG B 20 REMARK 465 THR B 21 REMARK 465 ARG B 189 REMARK 465 LEU B 190 REMARK 465 ASP B 191 REMARK 465 VAL B 192 REMARK 465 GLY B 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 31 O3A MLA A 201 2.06 REMARK 500 NZ LYS B 72 OE2 GLU B 76 2.17 REMARK 500 NH1 ARG B 36 O3B MLA B 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 36 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 -92.74 -118.56 REMARK 500 ASN B 38 -94.59 -118.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLA B 201 DBREF 5KU7 A 20 193 UNP V9M2S5 V9M2S5_VITRO 20 193 DBREF 5KU7 B 20 193 UNP V9M2S5 V9M2S5_VITRO 20 193 SEQADV 5KU7 SER A 17 UNP V9M2S5 EXPRESSION TAG SEQADV 5KU7 ASN A 18 UNP V9M2S5 EXPRESSION TAG SEQADV 5KU7 ALA A 19 UNP V9M2S5 EXPRESSION TAG SEQADV 5KU7 SER B 17 UNP V9M2S5 EXPRESSION TAG SEQADV 5KU7 ASN B 18 UNP V9M2S5 EXPRESSION TAG SEQADV 5KU7 ALA B 19 UNP V9M2S5 EXPRESSION TAG SEQRES 1 A 177 SER ASN ALA ARG THR THR THR TYR ASP VAL PHE LEU SER SEQRES 2 A 177 PHE ARG GLY GLU ASP THR ARG TYR ASN PHE THR ASP HIS SEQRES 3 A 177 LEU TYR SER ALA LEU GLY ARG ARG GLY ILE ARG THR PHE SEQRES 4 A 177 ARG ASP ASP ARG LEU ARG ARG GLY GLU ALA ILE ALA PRO SEQRES 5 A 177 GLU LEU LEU LYS ALA ILE GLU GLU SER ARG SER SER VAL SEQRES 6 A 177 ILE VAL PHE SER GLU ASN TYR ALA HIS SER ARG TRP CYS SEQRES 7 A 177 LEU ASP GLU LEU VAL LYS ILE MET GLU CYS GLN LYS ASP SEQRES 8 A 177 LEU GLY HIS ALA VAL PHE PRO ILE PHE TYR HIS VAL ASP SEQRES 9 A 177 PRO SER HIS VAL ARG LYS GLN GLU GLY SER PHE GLY GLU SEQRES 10 A 177 ALA PHE ALA GLY TYR GLU GLU ASN TRP LYS ASP LYS ILE SEQRES 11 A 177 PRO ARG TRP ARG THR ALA LEU THR GLU ALA ALA ASN LEU SEQRES 12 A 177 SER GLY TRP HIS LEU LEU ASP ASP ARG TYR GLU SER ASN SEQRES 13 A 177 GLN ILE LYS GLU ILE THR ASN SER ILE PHE ARG GLN LEU SEQRES 14 A 177 LYS CYS LYS ARG LEU ASP VAL GLY SEQRES 1 B 177 SER ASN ALA ARG THR THR THR TYR ASP VAL PHE LEU SER SEQRES 2 B 177 PHE ARG GLY GLU ASP THR ARG TYR ASN PHE THR ASP HIS SEQRES 3 B 177 LEU TYR SER ALA LEU GLY ARG ARG GLY ILE ARG THR PHE SEQRES 4 B 177 ARG ASP ASP ARG LEU ARG ARG GLY GLU ALA ILE ALA PRO SEQRES 5 B 177 GLU LEU LEU LYS ALA ILE GLU GLU SER ARG SER SER VAL SEQRES 6 B 177 ILE VAL PHE SER GLU ASN TYR ALA HIS SER ARG TRP CYS SEQRES 7 B 177 LEU ASP GLU LEU VAL LYS ILE MET GLU CYS GLN LYS ASP SEQRES 8 B 177 LEU GLY HIS ALA VAL PHE PRO ILE PHE TYR HIS VAL ASP SEQRES 9 B 177 PRO SER HIS VAL ARG LYS GLN GLU GLY SER PHE GLY GLU SEQRES 10 B 177 ALA PHE ALA GLY TYR GLU GLU ASN TRP LYS ASP LYS ILE SEQRES 11 B 177 PRO ARG TRP ARG THR ALA LEU THR GLU ALA ALA ASN LEU SEQRES 12 B 177 SER GLY TRP HIS LEU LEU ASP ASP ARG TYR GLU SER ASN SEQRES 13 B 177 GLN ILE LYS GLU ILE THR ASN SER ILE PHE ARG GLN LEU SEQRES 14 B 177 LYS CYS LYS ARG LEU ASP VAL GLY HET MLA A 201 9 HET MLA B 201 9 HETNAM MLA MALONIC ACID HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 MLA 2(C3 H4 O4) FORMUL 5 HOH *34(H2 O) HELIX 1 AA1 ARG A 31 ARG A 36 1 6 HELIX 2 AA2 ASN A 38 ARG A 50 1 13 HELIX 3 AA3 ALA A 67 GLU A 76 1 10 HELIX 4 AA4 ASN A 87 HIS A 90 5 4 HELIX 5 AA5 SER A 91 LEU A 108 1 18 HELIX 6 AA6 ASP A 120 GLN A 127 1 8 HELIX 7 AA7 GLU A 128 GLU A 139 1 12 HELIX 8 AA8 LYS A 145 ASN A 158 1 14 HELIX 9 AA9 TYR A 169 VAL A 192 1 24 HELIX 10 AB1 ARG B 31 ARG B 36 1 6 HELIX 11 AB2 ASN B 38 ARG B 50 1 13 HELIX 12 AB3 ALA B 67 GLU B 76 1 10 HELIX 13 AB4 ASN B 87 HIS B 90 5 4 HELIX 14 AB5 SER B 91 LEU B 108 1 18 HELIX 15 AB6 ASP B 120 GLN B 127 1 8 HELIX 16 AB7 GLU B 128 GLU B 139 1 12 HELIX 17 AB8 LYS B 145 ASN B 158 1 14 HELIX 18 AB9 TYR B 169 CYS B 187 1 19 SHEET 1 AA1 5 THR A 54 PHE A 55 0 SHEET 2 AA1 5 TYR A 24 PHE A 30 1 N VAL A 26 O PHE A 55 SHEET 3 AA1 5 SER A 77 PHE A 84 1 O VAL A 83 N SER A 29 SHEET 4 AA1 5 ALA A 111 TYR A 117 1 O ILE A 115 N ILE A 82 SHEET 5 AA1 5 TRP A 162 LEU A 164 1 O TRP A 162 N PHE A 116 SHEET 1 AA2 5 THR B 54 PHE B 55 0 SHEET 2 AA2 5 TYR B 24 PHE B 30 1 N VAL B 26 O PHE B 55 SHEET 3 AA2 5 SER B 77 PHE B 84 1 O VAL B 83 N SER B 29 SHEET 4 AA2 5 ALA B 111 TYR B 117 1 O ILE B 115 N ILE B 82 SHEET 5 AA2 5 TRP B 162 LEU B 164 1 O TRP B 162 N PHE B 116 SSBOND 1 CYS A 187 CYS B 187 1555 2566 2.02 SITE 1 AC1 4 ARG A 31 GLY A 32 GLU A 33 ARG A 36 SITE 1 AC2 5 LEU A 60 ARG B 31 GLY B 32 GLU B 33 SITE 2 AC2 5 ARG B 36 CRYST1 41.855 89.117 113.858 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008783 0.00000