HEADER HYDROLASE/INHIBITOR 13-JUL-16 5KV9 TITLE CRYSTAL STRUCTURE OF A HPIV HAEMAGGLUTININ-NEURAMINIDASE-INHIBITOR TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-NEURAMINIDASE; COMPND 3 CHAIN: B; COMPND 4 EC: 3.2.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PARAINFLUENZA VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11216; SOURCE 4 ATCC: VR-93; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9 CELLS KEYWDS HAEMAGGLUTININ-NEURAMINIDASE, HYRDROLASE, VIRAL PROTEIN, HOST CELL KEYWDS 2 SURFACE RECEPTOR BINDING, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.DIRR,I.M.EL-DEEB,L.M.G.CHAVAS,P.GUILLON,M.VON ITZSTEIN REVDAT 6 04-OCT-23 5KV9 1 HETSYN REVDAT 5 29-JUL-20 5KV9 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 22-APR-20 5KV9 1 COMPND ATOM REVDAT 3 01-JAN-20 5KV9 1 REMARK REVDAT 2 27-SEP-17 5KV9 1 REMARK REVDAT 1 12-JUL-17 5KV9 0 JRNL AUTH L.DIRR,I.M.EL-DEEB,L.M.G.CHAVAS,P.GUILLON,M.V.ITZSTEIN JRNL TITL THE IMPACT OF THE BUTTERFLY EFFECT ON HUMAN PARAINFLUENZA JRNL TITL 2 VIRUS HAEMAGGLUTININ-NEURAMINIDASE INHIBITOR DESIGN. JRNL REF SCI REP V. 7 4507 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28674426 JRNL DOI 10.1038/S41598-017-04656-Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 24132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8800 - 4.1585 0.82 2523 123 0.1646 0.1972 REMARK 3 2 4.1585 - 3.3014 0.85 2530 138 0.1452 0.1754 REMARK 3 3 3.3014 - 2.8842 0.87 2544 158 0.1555 0.1795 REMARK 3 4 2.8842 - 2.6206 0.88 2579 153 0.1598 0.2139 REMARK 3 5 2.6206 - 2.4328 0.89 2626 118 0.1664 0.2426 REMARK 3 6 2.4328 - 2.2894 0.90 2600 155 0.1742 0.2277 REMARK 3 7 2.2894 - 2.1748 0.90 2614 133 0.1737 0.2188 REMARK 3 8 2.1748 - 2.0801 0.90 2622 142 0.1704 0.2486 REMARK 3 9 2.0801 - 2.0000 0.78 2245 129 0.1737 0.2433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3557 REMARK 3 ANGLE : 1.286 4852 REMARK 3 CHIRALITY : 0.167 558 REMARK 3 PLANARITY : 0.007 611 REMARK 3 DIHEDRAL : 16.367 1329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000218423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4XJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE BUFFER, 0.2 M AMMONIUM REMARK 280 SULFATE, 20 % PEG 3000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.24600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.24600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.04900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.68650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.04900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.68650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.24600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.04900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.68650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.24600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.04900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.68650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 387 REMARK 465 LEU B 388 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 465 HIS B 575 REMARK 465 HIS B 576 REMARK 465 HIS B 577 REMARK 465 HIS B 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 523 C1 NAG B 604 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 896 O HOH B 896 3554 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 389 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 SER B 390 C - N - CA ANGL. DEV. = 40.6 DEGREES REMARK 500 SER B 390 N - CA - CB ANGL. DEV. = -26.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 199 -163.23 -126.45 REMARK 500 ASN B 248 93.38 107.62 REMARK 500 ILE B 249 -63.18 -109.02 REMARK 500 ASN B 262 -127.33 46.05 REMARK 500 VAL B 322 -53.80 78.91 REMARK 500 SER B 390 -7.22 174.71 REMARK 500 TRP B 406 122.54 -33.52 REMARK 500 SER B 427 -146.98 -123.12 REMARK 500 SER B 456 -152.35 -145.89 REMARK 500 TRP B 465 130.03 -37.52 REMARK 500 SER B 468 14.82 -142.10 REMARK 500 THR B 475 -160.02 -171.23 REMARK 500 LYS B 500 30.13 -150.74 REMARK 500 ARG B 522 -97.92 -150.49 REMARK 500 ASN B 523 -172.28 -172.11 REMARK 500 TYR B 539 -121.71 58.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 389 SER B 390 140.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 604 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 279 O REMARK 620 2 ASP B 279 OD1 74.7 REMARK 620 3 SER B 282 O 78.9 151.5 REMARK 620 4 SER B 282 OG 80.6 116.6 68.7 REMARK 620 5 GLY B 284 O 152.7 113.9 85.5 114.5 REMARK 620 6 ALA B 316 O 81.6 78.7 86.8 152.0 75.3 REMARK 620 7 HOH B 715 O 130.3 80.9 125.5 72.8 76.9 134.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XJQ RELATED DB: PDB REMARK 900 4XJQ CONTAINS THE SAME PROTEIN AS APO FORM. REMARK 900 RELATED ID: 4XJR RELATED DB: PDB REMARK 900 4XJR CONTAINS THE SAME PROTEIN COMPLEXED WITH OEL. REMARK 900 RELATED ID: 5KV8 RELATED DB: PDB DBREF 5KV9 B 141 572 UNP G8G134 G8G134_9PARA 141 572 SEQADV 5KV9 HIS B 573 UNP G8G134 EXPRESSION TAG SEQADV 5KV9 HIS B 574 UNP G8G134 EXPRESSION TAG SEQADV 5KV9 HIS B 575 UNP G8G134 EXPRESSION TAG SEQADV 5KV9 HIS B 576 UNP G8G134 EXPRESSION TAG SEQADV 5KV9 HIS B 577 UNP G8G134 EXPRESSION TAG SEQADV 5KV9 HIS B 578 UNP G8G134 EXPRESSION TAG SEQRES 1 B 438 ARG ILE THR HIS ASP VAL GLY ILE LYS PRO LEU ASN PRO SEQRES 2 B 438 ASP ASP PHE TRP ARG CYS THR SER GLY LEU PRO SER LEU SEQRES 3 B 438 MET LYS THR PRO LYS ILE ARG LEU MET PRO GLY PRO GLY SEQRES 4 B 438 LEU LEU ALA MET PRO THR THR VAL ASP GLY CYS VAL ARG SEQRES 5 B 438 THR PRO SER LEU VAL ILE ASN ASP LEU ILE TYR ALA TYR SEQRES 6 B 438 THR SER ASN LEU ILE THR ARG GLY CYS GLN ASP ILE GLY SEQRES 7 B 438 LYS SER TYR GLN VAL LEU GLN ILE GLY ILE ILE THR VAL SEQRES 8 B 438 ASN SER ASP LEU VAL PRO ASP LEU ASN PRO ARG ILE SER SEQRES 9 B 438 HIS THR PHE ASN ILE ASN ASP ASN ARG LYS SER CYS SER SEQRES 10 B 438 LEU ALA LEU LEU ASN THR ASP VAL TYR GLN LEU CYS SER SEQRES 11 B 438 THR PRO LYS VAL ASP GLU ARG SER ASP TYR ALA SER SER SEQRES 12 B 438 GLY ILE GLU ASP ILE VAL LEU ASP ILE VAL ASN HIS ASP SEQRES 13 B 438 GLY SER ILE SER THR THR ARG PHE LYS ASN ASN ASN ILE SEQRES 14 B 438 SER PHE ASP GLN PRO TYR ALA ALA LEU TYR PRO SER VAL SEQRES 15 B 438 GLY PRO GLY ILE TYR TYR LYS GLY LYS ILE ILE PHE LEU SEQRES 16 B 438 GLY TYR GLY GLY LEU GLU HIS PRO ILE ASN GLU ASN ALA SEQRES 17 B 438 ILE CYS ASN THR THR GLY CYS PRO GLY LYS THR GLN ARG SEQRES 18 B 438 ASP CYS ASN GLN ALA SER HIS SER PRO TRP PHE SER ASP SEQRES 19 B 438 ARG ARG MET VAL ASN SER ILE ILE VAL VAL ASP LYS GLY SEQRES 20 B 438 LEU ASN SER ILE PRO LYS LEU LYS VAL TRP THR ILE SER SEQRES 21 B 438 MET ARG GLN ASN TYR TRP GLY SER GLU GLY ARG LEU LEU SEQRES 22 B 438 LEU LEU GLY ASN LYS ILE TYR ILE TYR THR ARG SER THR SEQRES 23 B 438 SER TRP HIS SER LYS LEU GLN LEU GLY ILE ILE ASP ILE SEQRES 24 B 438 THR ASP TYR SER ASP ILE ARG ILE LYS TRP THR TRP HIS SEQRES 25 B 438 ASN VAL LEU SER ARG PRO GLY ASN ASN GLU CYS PRO TRP SEQRES 26 B 438 GLY HIS SER CYS PRO ASP GLY CYS ILE THR GLY VAL TYR SEQRES 27 B 438 THR ASP ALA TYR PRO LEU ASN PRO THR GLY SER ILE VAL SEQRES 28 B 438 SER SER VAL ILE LEU ASP SER GLN LYS SER ARG VAL ASN SEQRES 29 B 438 PRO VAL ILE THR TYR SER THR ALA THR GLU ARG VAL ASN SEQRES 30 B 438 GLU LEU ALA ILE ARG ASN LYS THR LEU SER ALA GLY TYR SEQRES 31 B 438 THR THR THR SER CYS ILE THR HIS TYR ASN LYS GLY TYR SEQRES 32 B 438 CYS PHE HIS ILE VAL GLU ILE ASN HIS LYS SER LEU ASP SEQRES 33 B 438 THR PHE GLN PRO MET LEU PHE LYS THR GLU ILE PRO LYS SEQRES 34 B 438 SER CYS SER HIS HIS HIS HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HET CA B 601 1 HET NAG B 604 14 HET I57 B 605 32 HET EDO B 606 4 HET EDO B 607 4 HET EDO B 608 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM I57 2,6-ANHYDRO-3,4,5-TRIDEOXY-5-[(2-METHYLPROPANOYL) HETNAM 2 I57 AMINO]-4-(4-PHENYL-1H-1,2,3-TRIAZOL-1-YL)-D-GLYCERO-D- HETNAM 3 I57 GALACTO-NON-2-EN ONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN I57 (2~{R},3~{R},4~{S})-3-(2-METHYLPROPANOYLAMINO)-4-(4- HETSYN 2 I57 PHENYL-1,2,3-TRIAZOL-1-YL)-2-[(1~{R},2~{R})-1,2,3- HETSYN 3 I57 TRIS(OXIDANYL)PRO PYL]-3,4-DIHYDRO-2~{H}-PYRAN-6- HETSYN 4 I57 CARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 CA CA 2+ FORMUL 5 I57 C21 H26 N4 O7 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 HOH *247(H2 O) HELIX 1 AA1 ASN B 152 TRP B 157 1 6 HELIX 2 AA2 ASP B 275 SER B 282 1 8 HELIX 3 AA3 LYS B 305 ILE B 309 5 5 HELIX 4 AA4 THR B 359 SER B 367 1 9 HELIX 5 AA5 HIS B 368 SER B 373 5 6 SHEET 1 AA1 4 ILE B 148 PRO B 150 0 SHEET 2 AA1 4 ALA B 528 HIS B 538 -1 O THR B 537 N LYS B 149 SHEET 3 AA1 4 LYS B 541 HIS B 552 -1 O TYR B 543 N ILE B 536 SHEET 4 AA1 4 THR B 557 GLU B 566 -1 O PHE B 563 N HIS B 546 SHEET 1 AA2 2 LEU B 163 LEU B 166 0 SHEET 2 AA2 2 LYS B 569 SER B 572 -1 O SER B 570 N SER B 165 SHEET 1 AA3 4 CYS B 190 ILE B 198 0 SHEET 2 AA3 4 TYR B 203 ILE B 210 -1 O ILE B 210 N CYS B 190 SHEET 3 AA3 4 TYR B 221 VAL B 231 -1 O GLN B 225 N TYR B 205 SHEET 4 AA3 4 PRO B 237 PHE B 247 -1 O PHE B 247 N GLN B 222 SHEET 1 AA4 4 LYS B 254 LEU B 261 0 SHEET 2 AA4 4 ASP B 264 SER B 270 -1 O TYR B 266 N ALA B 259 SHEET 3 AA4 4 ILE B 288 VAL B 293 -1 O ASP B 291 N GLN B 267 SHEET 4 AA4 4 ILE B 299 PHE B 304 -1 O PHE B 304 N ILE B 288 SHEET 1 AA5 5 SER B 310 PHE B 311 0 SHEET 2 AA5 5 LYS B 393 THR B 398 1 O VAL B 396 N SER B 310 SHEET 3 AA5 5 MET B 377 ASP B 385 -1 N VAL B 383 O LYS B 395 SHEET 4 AA5 5 LYS B 331 LEU B 340 -1 N PHE B 334 O ILE B 382 SHEET 5 AA5 5 TYR B 315 PRO B 320 -1 N TYR B 319 O TYR B 337 SHEET 1 AA6 5 SER B 310 PHE B 311 0 SHEET 2 AA6 5 LYS B 393 THR B 398 1 O VAL B 396 N SER B 310 SHEET 3 AA6 5 MET B 377 ASP B 385 -1 N VAL B 383 O LYS B 395 SHEET 4 AA6 5 LYS B 331 LEU B 340 -1 N PHE B 334 O ILE B 382 SHEET 5 AA6 5 ILE B 326 TYR B 328 -1 N ILE B 326 O ILE B 333 SHEET 1 AA7 4 GLY B 410 LEU B 415 0 SHEET 2 AA7 4 LYS B 418 THR B 423 -1 O TYR B 420 N LEU B 413 SHEET 3 AA7 4 GLN B 433 ASP B 438 -1 O ILE B 437 N ILE B 419 SHEET 4 AA7 4 ARG B 446 TRP B 449 -1 O ARG B 446 N ASP B 438 SHEET 1 AA8 4 ALA B 481 PRO B 483 0 SHEET 2 AA8 4 ILE B 490 LEU B 496 -1 O SER B 492 N TYR B 482 SHEET 3 AA8 4 PRO B 505 THR B 511 -1 O THR B 508 N SER B 493 SHEET 4 AA8 4 ARG B 515 ALA B 520 -1 O LEU B 519 N ILE B 507 SSBOND 1 CYS B 159 CYS B 571 1555 1555 2.03 SSBOND 2 CYS B 190 CYS B 214 1555 1555 2.06 SSBOND 3 CYS B 256 CYS B 269 1555 1555 2.07 SSBOND 4 CYS B 350 CYS B 363 1555 1555 2.02 SSBOND 5 CYS B 355 CYS B 469 1555 1555 2.05 SSBOND 6 CYS B 463 CYS B 473 1555 1555 2.04 SSBOND 7 CYS B 535 CYS B 544 1555 1555 2.07 LINK ND2 ASN B 351 C1 NAG A 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O ASP B 279 CA CA B 601 1555 1555 2.33 LINK OD1 ASP B 279 CA CA B 601 1555 1555 2.35 LINK O SER B 282 CA CA B 601 1555 1555 2.40 LINK OG SER B 282 CA CA B 601 1555 1555 2.55 LINK O GLY B 284 CA CA B 601 1555 1555 2.25 LINK O ALA B 316 CA CA B 601 1555 1555 2.26 LINK CA CA B 601 O HOH B 715 1555 1555 2.56 CISPEP 1 THR B 169 PRO B 170 0 -6.64 CRYST1 80.098 107.373 94.492 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010583 0.00000