HEADER TRANSFERASE 14-JUL-16 5KVA TITLE CRYSTAL STRUCTURE OF SORGHUM CAFFEOYL-COA O-METHYLTRANSFERASE TITLE 2 (CCOAOMT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAFFEOYL-COA O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 GENE: SB10G004540, SORBIDRAFT_10G004540; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAFFEOYL-COA O-METHYLTRANSFERASE, SBCCOAOMT, CCOAOMT, CCOMT OMT, SAM KEYWDS 2 O-METHYLTRANSFERASE, METHYLTRANSFERASE, COENZYME A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.WALKER,S.A.SATTLER,M.REGNER,J.P.JONES,J.RALPH,W.VERMERRIS, AUTHOR 2 S.E.SATTLER,C.KANG REVDAT 3 06-MAR-24 5KVA 1 JRNL REMARK LINK REVDAT 2 14-SEP-16 5KVA 1 JRNL REVDAT 1 10-AUG-16 5KVA 0 JRNL AUTH A.M.WALKER,S.A.SATTLER,M.REGNER,J.P.JONES,J.RALPH, JRNL AUTH 2 W.VERMERRIS,S.E.SATTLER,C.KANG JRNL TITL THE STRUCTURE AND CATALYTIC MECHANISM OF SORGHUM BICOLOR JRNL TITL 2 CAFFEOYL-COA O-METHYLTRANSFERASE. JRNL REF PLANT PHYSIOL. V. 172 78 2016 JRNL REFN ESSN 1532-2548 JRNL PMID 27457122 JRNL DOI 10.1104/PP.16.00845 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 48932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6519 - 4.4027 1.00 3448 148 0.1519 0.1910 REMARK 3 2 4.4027 - 3.4949 1.00 3387 147 0.1404 0.1444 REMARK 3 3 3.4949 - 3.0532 1.00 3398 145 0.1598 0.1852 REMARK 3 4 3.0532 - 2.7741 1.00 3368 141 0.1646 0.2037 REMARK 3 5 2.7741 - 2.5752 1.00 3402 142 0.1642 0.2199 REMARK 3 6 2.5752 - 2.4234 1.00 3365 142 0.1570 0.1923 REMARK 3 7 2.4234 - 2.3020 1.00 3389 152 0.1571 0.1961 REMARK 3 8 2.3020 - 2.2018 1.00 3368 148 0.1616 0.2018 REMARK 3 9 2.2018 - 2.1171 1.00 3359 138 0.1605 0.2126 REMARK 3 10 2.1171 - 2.0440 1.00 3382 151 0.1661 0.2109 REMARK 3 11 2.0440 - 1.9801 1.00 3341 134 0.1702 0.2199 REMARK 3 12 1.9801 - 1.9235 1.00 3358 141 0.1716 0.2327 REMARK 3 13 1.9235 - 1.8729 0.99 3361 140 0.1820 0.2202 REMARK 3 14 1.8729 - 1.8272 0.89 3004 133 0.2159 0.2737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3765 REMARK 3 ANGLE : 1.101 5096 REMARK 3 CHIRALITY : 0.041 576 REMARK 3 PLANARITY : 0.005 649 REMARK 3 DIHEDRAL : 12.433 1422 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48949 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.827 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 TRIS PH 8.0, 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.78100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 GLY A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 ASN A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 ARG A 28 REMARK 465 HIS A 29 REMARK 465 SER A 30 REMARK 465 GLU A 31 REMARK 465 VAL A 32 REMARK 465 GLY A 33 REMARK 465 HIS A 34 REMARK 465 MET B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 THR B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 LYS B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 ASN B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 ALA B 21 REMARK 465 ASN B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 GLN B 25 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 ARG B 28 REMARK 465 HIS B 29 REMARK 465 SER B 30 REMARK 465 GLU B 31 REMARK 465 VAL B 32 REMARK 465 GLY B 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 607 O HOH B 638 1.84 REMARK 500 O HOH A 634 O HOH A 682 1.95 REMARK 500 O HOH A 640 O HOH A 668 2.02 REMARK 500 O HOH B 704 O HOH B 715 2.03 REMARK 500 O HOH B 625 O HOH B 693 2.04 REMARK 500 O HOH A 664 O HOH A 700 2.04 REMARK 500 O HOH A 402 O HOH A 482 2.04 REMARK 500 O HOH B 607 O HOH B 643 2.05 REMARK 500 O HOH A 428 O HOH A 609 2.06 REMARK 500 O HOH B 633 O HOH B 637 2.06 REMARK 500 OD1 ASP A 41 O HOH A 401 2.07 REMARK 500 O HOH A 593 O HOH B 508 2.08 REMARK 500 O HOH A 409 O HOH A 611 2.09 REMARK 500 O HOH A 675 O HOH A 698 2.10 REMARK 500 O HOH A 624 O HOH A 694 2.12 REMARK 500 OH TYR A 53 O HOH A 402 2.13 REMARK 500 O HOH B 592 O HOH B 674 2.15 REMARK 500 O HOH B 618 O HOH B 661 2.17 REMARK 500 OD2 ASP A 118 O HOH A 403 2.17 REMARK 500 OE1 GLU A 65 O HOH A 404 2.18 REMARK 500 O HOH B 449 O HOH B 543 2.18 REMARK 500 OE2 GLU A 244 O HOH A 405 2.19 REMARK 500 OE1 GLU A 241 O HOH A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 643 O HOH B 654 2645 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 52 -64.32 -108.49 REMARK 500 TYR A 103 -127.95 50.05 REMARK 500 ALA A 178 -128.89 -137.27 REMARK 500 PRO A 249 49.16 -83.02 REMARK 500 VAL B 52 -65.38 -107.83 REMARK 500 LYS B 95 -41.20 -132.21 REMARK 500 TYR B 103 -127.55 50.23 REMARK 500 ALA B 178 -132.11 -152.71 REMARK 500 PRO B 249 48.74 -85.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 699 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 700 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 719 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 720 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 722 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 723 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 724 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 725 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 726 DISTANCE = 7.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 177 OD1 REMARK 620 2 ASP A 177 OD2 52.8 REMARK 620 3 ASP A 203 OD2 89.6 82.7 REMARK 620 4 ASN A 204 OD1 78.2 129.3 84.9 REMARK 620 5 HOH A 559 O 120.7 73.9 109.3 155.3 REMARK 620 6 HOH A 598 O 157.6 142.7 79.5 81.4 81.5 REMARK 620 7 HOH A 600 O 101.4 116.8 160.4 81.6 79.2 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 177 OD1 REMARK 620 2 ASP B 177 OD2 52.1 REMARK 620 3 ASP B 203 OD2 92.2 82.8 REMARK 620 4 ASN B 204 OD1 81.6 130.9 83.8 REMARK 620 5 HOH B 550 O 113.6 71.1 113.6 155.2 REMARK 620 6 HOH B 587 O 160.6 144.0 82.1 79.4 85.5 REMARK 620 7 HOH B 608 O 98.0 114.7 162.5 83.6 75.2 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 DBREF 5KVA A 1 261 UNP C5Z4W3 C5Z4W3_SORBI 1 261 DBREF 5KVA B 1 261 UNP C5Z4W3 C5Z4W3_SORBI 1 261 SEQADV 5KVA MET A -16 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -15 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -14 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -13 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -12 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -11 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS A -10 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA SER A -9 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA SER A -8 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA GLY A -7 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA THR A -6 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP A -5 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP A -4 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP A -3 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP A -2 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA LYS A -1 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ALA A 0 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA MET B -16 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -15 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -14 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -13 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -12 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -11 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA HIS B -10 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA SER B -9 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA SER B -8 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA GLY B -7 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA THR B -6 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP B -5 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP B -4 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP B -3 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ASP B -2 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA LYS B -1 UNP C5Z4W3 EXPRESSION TAG SEQADV 5KVA ALA B 0 UNP C5Z4W3 EXPRESSION TAG SEQRES 1 A 278 MET HIS HIS HIS HIS HIS HIS SER SER GLY THR ASP ASP SEQRES 2 A 278 ASP ASP LYS ALA MET ALA THR THR ALA THR GLU ALA ALA SEQRES 3 A 278 LYS ALA ALA PRO ALA GLU GLN ALA ASN GLY ASN ALA ASN SEQRES 4 A 278 GLY GLU GLN LYS THR ARG HIS SER GLU VAL GLY HIS LYS SEQRES 5 A 278 SER LEU LEU LYS SER ASP ASP LEU TYR GLN TYR ILE LEU SEQRES 6 A 278 ASP THR SER VAL TYR PRO ARG GLU PRO GLU SER MET LYS SEQRES 7 A 278 GLU LEU ARG GLU ILE THR ALA LYS HIS PRO TRP ASN LEU SEQRES 8 A 278 MET THR THR SER ALA ASP GLU GLY GLN PHE LEU ASN MET SEQRES 9 A 278 LEU ILE LYS LEU ILE GLY ALA LYS LYS THR MET GLU ILE SEQRES 10 A 278 GLY VAL TYR THR GLY TYR SER LEU LEU ALA THR ALA LEU SEQRES 11 A 278 ALA LEU PRO GLU ASP GLY THR ILE LEU ALA MET ASP ILE SEQRES 12 A 278 ASN ARG GLU ASN TYR GLU LEU GLY LEU PRO CYS ILE GLU SEQRES 13 A 278 LYS ALA GLY VAL ALA HIS LYS ILE ASP PHE ARG GLU GLY SEQRES 14 A 278 PRO ALA LEU PRO VAL LEU ASP ASP LEU ILE ALA ASP GLU SEQRES 15 A 278 LYS ASN HIS GLY SER PHE ASP PHE VAL PHE VAL ASP ALA SEQRES 16 A 278 ASP LYS ASP ASN TYR LEU ASN TYR HIS ASP ARG LEU LEU SEQRES 17 A 278 LYS LEU VAL LYS LEU GLY GLY LEU ILE GLY TYR ASP ASN SEQRES 18 A 278 THR LEU TRP ASN GLY SER VAL VAL LEU PRO ASP ASP ALA SEQRES 19 A 278 PRO MET ARG LYS TYR ILE ARG PHE TYR ARG ASP PHE VAL SEQRES 20 A 278 LEU VAL LEU ASN LYS ALA LEU ALA ALA ASP GLU ARG VAL SEQRES 21 A 278 GLU ILE CYS GLN LEU PRO VAL GLY ASP GLY VAL THR LEU SEQRES 22 A 278 CYS ARG ARG VAL LYS SEQRES 1 B 278 MET HIS HIS HIS HIS HIS HIS SER SER GLY THR ASP ASP SEQRES 2 B 278 ASP ASP LYS ALA MET ALA THR THR ALA THR GLU ALA ALA SEQRES 3 B 278 LYS ALA ALA PRO ALA GLU GLN ALA ASN GLY ASN ALA ASN SEQRES 4 B 278 GLY GLU GLN LYS THR ARG HIS SER GLU VAL GLY HIS LYS SEQRES 5 B 278 SER LEU LEU LYS SER ASP ASP LEU TYR GLN TYR ILE LEU SEQRES 6 B 278 ASP THR SER VAL TYR PRO ARG GLU PRO GLU SER MET LYS SEQRES 7 B 278 GLU LEU ARG GLU ILE THR ALA LYS HIS PRO TRP ASN LEU SEQRES 8 B 278 MET THR THR SER ALA ASP GLU GLY GLN PHE LEU ASN MET SEQRES 9 B 278 LEU ILE LYS LEU ILE GLY ALA LYS LYS THR MET GLU ILE SEQRES 10 B 278 GLY VAL TYR THR GLY TYR SER LEU LEU ALA THR ALA LEU SEQRES 11 B 278 ALA LEU PRO GLU ASP GLY THR ILE LEU ALA MET ASP ILE SEQRES 12 B 278 ASN ARG GLU ASN TYR GLU LEU GLY LEU PRO CYS ILE GLU SEQRES 13 B 278 LYS ALA GLY VAL ALA HIS LYS ILE ASP PHE ARG GLU GLY SEQRES 14 B 278 PRO ALA LEU PRO VAL LEU ASP ASP LEU ILE ALA ASP GLU SEQRES 15 B 278 LYS ASN HIS GLY SER PHE ASP PHE VAL PHE VAL ASP ALA SEQRES 16 B 278 ASP LYS ASP ASN TYR LEU ASN TYR HIS ASP ARG LEU LEU SEQRES 17 B 278 LYS LEU VAL LYS LEU GLY GLY LEU ILE GLY TYR ASP ASN SEQRES 18 B 278 THR LEU TRP ASN GLY SER VAL VAL LEU PRO ASP ASP ALA SEQRES 19 B 278 PRO MET ARG LYS TYR ILE ARG PHE TYR ARG ASP PHE VAL SEQRES 20 B 278 LEU VAL LEU ASN LYS ALA LEU ALA ALA ASP GLU ARG VAL SEQRES 21 B 278 GLU ILE CYS GLN LEU PRO VAL GLY ASP GLY VAL THR LEU SEQRES 22 B 278 CYS ARG ARG VAL LYS HET SAM A 301 27 HET CA A 302 1 HET SAM B 301 27 HET CA B 302 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CA CALCIUM ION FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *627(H2 O) HELIX 1 AA1 SER A 40 VAL A 52 1 13 HELIX 2 AA2 TYR A 53 GLU A 56 5 4 HELIX 3 AA3 PRO A 57 ALA A 68 1 12 HELIX 4 AA4 TRP A 72 THR A 76 5 5 HELIX 5 AA5 SER A 78 GLY A 93 1 16 HELIX 6 AA6 GLY A 105 LEU A 115 1 11 HELIX 7 AA7 ASN A 127 ALA A 141 1 15 HELIX 8 AA8 VAL A 143 HIS A 145 5 3 HELIX 9 AA9 PRO A 153 ASP A 164 1 12 HELIX 10 AB1 GLU A 165 HIS A 168 5 4 HELIX 11 AB2 ASP A 179 ASP A 181 5 3 HELIX 12 AB3 ASN A 182 LEU A 193 1 12 HELIX 13 AB4 LEU A 206 LEU A 213 5 8 HELIX 14 AB5 ARG A 220 ALA A 239 1 20 HELIX 15 AB6 SER B 40 VAL B 52 1 13 HELIX 16 AB7 TYR B 53 GLU B 56 5 4 HELIX 17 AB8 PRO B 57 LYS B 69 1 13 HELIX 18 AB9 TRP B 72 THR B 76 5 5 HELIX 19 AC1 SER B 78 GLY B 93 1 16 HELIX 20 AC2 GLY B 105 LEU B 115 1 11 HELIX 21 AC3 ASN B 127 ALA B 141 1 15 HELIX 22 AC4 VAL B 143 HIS B 145 5 3 HELIX 23 AC5 PRO B 153 ALA B 163 1 11 HELIX 24 AC6 ASP B 164 HIS B 168 5 5 HELIX 25 AC7 ASP B 179 ASP B 181 5 3 HELIX 26 AC8 ASN B 182 LEU B 193 1 12 HELIX 27 AC9 LEU B 206 LEU B 213 5 8 HELIX 28 AD1 ARG B 220 ALA B 239 1 20 SHEET 1 AA1 7 ILE A 147 GLU A 151 0 SHEET 2 AA1 7 THR A 120 ASP A 125 1 N ILE A 121 O ASP A 148 SHEET 3 AA1 7 LYS A 96 ILE A 100 1 N THR A 97 O THR A 120 SHEET 4 AA1 7 PHE A 171 VAL A 176 1 O ASP A 172 N LYS A 96 SHEET 5 AA1 7 VAL A 194 ASP A 203 1 O GLY A 201 N VAL A 176 SHEET 6 AA1 7 VAL A 254 ARG A 259 -1 O CYS A 257 N ILE A 200 SHEET 7 AA1 7 VAL A 243 LEU A 248 -1 N LEU A 248 O VAL A 254 SHEET 1 AA2 7 ILE B 147 GLU B 151 0 SHEET 2 AA2 7 THR B 120 ASP B 125 1 N ILE B 121 O ASP B 148 SHEET 3 AA2 7 LYS B 96 ILE B 100 1 N THR B 97 O THR B 120 SHEET 4 AA2 7 PHE B 171 VAL B 176 1 O ASP B 172 N LYS B 96 SHEET 5 AA2 7 VAL B 194 ASP B 203 1 O ASP B 203 N VAL B 176 SHEET 6 AA2 7 VAL B 254 ARG B 259 -1 O CYS B 257 N ILE B 200 SHEET 7 AA2 7 VAL B 243 LEU B 248 -1 N LEU B 248 O VAL B 254 LINK OD1 ASP A 177 CA CA A 302 1555 1555 2.35 LINK OD2 ASP A 177 CA CA A 302 1555 1555 2.56 LINK OD2 ASP A 203 CA CA A 302 1555 1555 2.33 LINK OD1 ASN A 204 CA CA A 302 1555 1555 2.44 LINK CA CA A 302 O HOH A 559 1555 1555 2.43 LINK CA CA A 302 O HOH A 598 1555 1555 2.52 LINK CA CA A 302 O HOH A 600 1555 1555 2.35 LINK OD1 ASP B 177 CA CA B 302 1555 1555 2.37 LINK OD2 ASP B 177 CA CA B 302 1555 1555 2.60 LINK OD2 ASP B 203 CA CA B 302 1555 1555 2.29 LINK OD1 ASN B 204 CA CA B 302 1555 1555 2.38 LINK CA CA B 302 O HOH B 550 1555 1555 2.42 LINK CA CA B 302 O HOH B 587 1555 1555 2.37 LINK CA CA B 302 O HOH B 608 1555 1555 2.39 SITE 1 AC1 20 MET A 75 THR A 76 THR A 77 GLY A 101 SITE 2 AC1 20 VAL A 102 TYR A 103 SER A 107 ASP A 125 SITE 3 AC1 20 ILE A 126 PRO A 153 ALA A 154 ASP A 177 SITE 4 AC1 20 ALA A 178 ASP A 179 TYR A 186 HOH A 437 SITE 5 AC1 20 HOH A 452 HOH A 499 HOH A 503 HOH A 533 SITE 1 AC2 6 ASP A 177 ASP A 203 ASN A 204 HOH A 559 SITE 2 AC2 6 HOH A 598 HOH A 600 SITE 1 AC3 21 MET B 75 THR B 76 THR B 77 GLY B 101 SITE 2 AC3 21 VAL B 102 TYR B 103 SER B 107 ASP B 125 SITE 3 AC3 21 ILE B 126 GLY B 152 PRO B 153 ALA B 154 SITE 4 AC3 21 ASP B 177 ALA B 178 ASP B 179 TYR B 186 SITE 5 AC3 21 HOH B 412 HOH B 439 HOH B 495 HOH B 506 SITE 6 AC3 21 HOH B 528 SITE 1 AC4 6 ASP B 177 ASP B 203 ASN B 204 HOH B 550 SITE 2 AC4 6 HOH B 587 HOH B 608 CRYST1 55.531 91.562 55.783 90.00 90.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018008 0.000000 0.000218 0.00000 SCALE2 0.000000 0.010922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017928 0.00000