data_5KX9
#
_entry.id 5KX9
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5KX9 pdb_00005kx9 10.2210/pdb5kx9/pdb
WWPDB D_1000222854 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5KX9
_pdbx_database_status.recvd_initial_deposition_date 2016-07-20
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_audit_author.name 'Fischmann, T.O.'
_audit_author.pdbx_ordinal 1
#
loop_
_citation.abstract
_citation.abstract_id_CAS
_citation.book_id_ISBN
_citation.book_publisher
_citation.book_publisher_city
_citation.book_title
_citation.coordinate_linkage
_citation.country
_citation.database_id_Medline
_citation.details
_citation.id
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_full
_citation.journal_issue
_citation.journal_volume
_citation.language
_citation.page_first
_citation.page_last
_citation.title
_citation.year
_citation.database_id_CSD
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.unpublished_flag
? ? ? ? ? ? ? US ? ? primary 'Rna Biol.' ? ? 1555-8584 ? ? 13 ? 946 954
'Atomic resolution mechanistic studies of ribocil: A highly selective unnatural ligand mimic of the E. coli FMN riboswitch.' 2016
? 10.1080/15476286.2016.1216304 27485612 ?
? ? ? ? ? ? ? UK ? ? 1 Nature NATUAS 0006 1476-4687 ? ? 526 ? 672 677
'Selective small-molecule inhibition of an RNA structural element.' 2015
? 10.1038/nature15542 26416753 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Howe, J.A.' 1 ?
primary 'Xiao, L.' 2 ?
primary 'Fischmann, T.O.' 3 ?
primary 'Wang, H.' 4 ?
primary 'Tang, H.' 5 ?
primary 'Villafania, A.' 6 ?
primary 'Zhang, R.' 7 ?
primary 'Barbieri, C.M.' 8 ?
primary 'Roemer, T.' 9 ?
1 'Howe, J.A.' 10 ?
1 'Wang, H.' 11 ?
1 'Fischmann, T.O.' 12 ?
1 'Balibar, C.J.' 13 ?
1 'Xiao, L.' 14 ?
1 'Galgoci, A.M.' 15 ?
1 'Malinverni, J.C.' 16 ?
1 'Mayhood, T.' 17 ?
1 'Villafania, A.' 18 ?
1 'Nahvi, A.' 19 ?
1 'Murgolo, N.' 20 ?
1 'Barbieri, C.M.' 21 ?
1 'Mann, P.A.' 22 ?
1 'Carr, D.' 23 ?
1 'Xia, E.' 24 ?
1 'Zuck, P.' 25 ?
1 'Riley, D.' 26 ?
1 'Painter, R.E.' 27 ?
1 'Walker, S.S.' 28 ?
1 'Sherborne, B.' 29 ?
1 'de Jesus, R.' 30 ?
1 'Pan, W.' 31 ?
1 'Plotkin, M.A.' 32 ?
1 'Wu, J.' 33 ?
1 'Rindgen, D.' 34 ?
1 'Cummings, J.' 35 ?
1 'Garlisi, C.G.' 36 ?
1 'Zhang, R.' 37 ?
1 'Sheth, P.R.' 38 ?
1 'Gill, C.J.' 39 ?
1 'Tang, H.' 40 ?
1 'Roemer, T.' 41 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 5KX9
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 71.280
_cell.length_a_esd ?
_cell.length_b 71.280
_cell.length_b_esd ?
_cell.length_c 138.930
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5KX9
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'FMN Riboswitch' 17455.389 1 ?
? ? ?
2 polymer syn 'FMN Riboswitch' 18092.771 1 ?
? ? ?
3 non-polymer syn 'POTASSIUM ION' 39.098 7 ?
? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ?
? ? ?
5 non-polymer syn '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' 383.467 1 ?
? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU
GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ?
2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC
GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 G n
1 3 A n
1 4 U n
1 5 C n
1 6 U n
1 7 U n
1 8 C n
1 9 G n
1 10 G n
1 11 G n
1 12 G n
1 13 C n
1 14 A n
1 15 G n
1 16 G n
1 17 G n
1 18 U n
1 19 G n
1 20 A n
1 21 A n
1 22 A n
1 23 U n
1 24 U n
1 25 C n
1 26 C n
1 27 C n
1 28 G n
1 29 A n
1 30 C n
1 31 C n
1 32 G n
1 33 G n
1 34 U n
1 35 G n
1 36 G n
1 37 U n
1 38 A n
1 39 U n
1 40 A n
1 41 G n
1 42 U n
1 43 C n
1 44 C n
1 45 A n
1 46 C n
1 47 G n
1 48 A n
1 49 A n
1 50 A n
1 51 G n
1 52 C n
1 53 U n
1 54 U n
2 1 G n
2 2 C n
2 3 U n
2 4 U n
2 5 U n
2 6 G n
2 7 A n
2 8 U n
2 9 U n
2 10 U n
2 11 G n
2 12 G n
2 13 U n
2 14 G n
2 15 A n
2 16 A n
2 17 A n
2 18 U n
2 19 U n
2 20 C n
2 21 C n
2 22 A n
2 23 A n
2 24 A n
2 25 A n
2 26 C n
2 27 C n
2 28 G n
2 29 A n
2 30 C n
2 31 A n
2 32 G n
2 33 U n
2 34 A n
2 35 G n
2 36 A n
2 37 G n
2 38 U n
2 39 C n
2 40 U n
2 41 G n
2 42 G n
2 43 A n
2 44 U n
2 45 G n
2 46 A n
2 47 G n
2 48 A n
2 49 G n
2 50 A n
2 51 A n
2 52 G n
2 53 A n
2 54 U n
2 55 U n
2 56 C n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ?
2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 GB LN831027.1 777193512 ? 1 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU 2158096
2 GB LN831027.1 777193512 ? 2 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA 2158150
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5KX9 X 3 ? 54 ? 777193512 2158096 ? 2158147 ? 3 54
2 2 5KX9 Y 1 ? 53 ? 777193512 2158150 ? 2158202 ? 57 109
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 5KX9 G X 1 ? GB 777193512 ? ? insertion 1 1
1 5KX9 G X 2 ? GB 777193512 ? ? insertion 2 2
2 5KX9 U Y 54 ? GB 777193512 ? ? insertion 110 3
2 5KX9 U Y 55 ? GB 777193512 ? ? insertion 111 4
2 5KX9 C Y 56 ? GB 777193512 ? ? insertion 112 5
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
6YG non-polymer . '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' ?
'C19 H21 N5 O2 S' 383.467
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O8 P' 363.221
K non-polymer . 'POTASSIUM ION' ? 'K 1'
39.098
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2'
24.305
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ?
'C9 H13 N2 O9 P' 324.181
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5KX9
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.87
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 57.08
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6.8
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.1 M NA ACETATE, PH 5.0, 0.2 M MGCL2, 7 TO 11% V/V PEG 4K'
_exptl_crystal_grow.pdbx_pH_range 4.5-6.8
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS3 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-09-03
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'SLS BEAMLINE X06DA'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.0
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline X06DA
_diffrn_source.pdbx_synchrotron_site SLS
#
_reflns.B_iso_Wilson_estimate 101.72
_reflns.entry_id 5KX9
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.9
_reflns.d_resolution_low 46.03
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 9428
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 98.8
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 9.3
_reflns.pdbx_Rmerge_I_obs 0.064
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 22.3
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.998
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 2.9
_reflns_shell.d_res_low 2.95
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 2.3
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 100.0
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.86
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 9.8
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half 0.799
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 3.5062
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] 3.5062
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -7.0124
_refine.B_iso_max ?
_refine.B_iso_mean 98.93
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.9366
_refine.correlation_coeff_Fo_to_Fc_free 0.9069
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5KX9
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.9
_refine.ls_d_res_low 37.04
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 9425
_refine.ls_number_reflns_R_free 458
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 98.89
_refine.ls_percent_reflns_R_free 4.86
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2177
_refine.ls_R_factor_R_free 0.2511
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2160
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_starting_model 5C45
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.378
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_analyze.entry_id 5KX9
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_coordinate_error_obs 0.477
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_sigma_a_free_details ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_sigma_a_obs_details ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.RG_d_res_high ?
_refine_analyze.RG_d_res_low ?
_refine_analyze.RG_free ?
_refine_analyze.RG_work ?
_refine_analyze.RG_free_work_ratio ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 2321
_refine_hist.pdbx_number_atoms_ligand 38
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 2359
_refine_hist.d_res_high 2.9
_refine_hist.d_res_low 37.04
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.010 ? 2628 ? t_bond_d 2.00 HARMONIC
'X-RAY DIFFRACTION' ? 0.76 ? 4090 ? t_angle_deg 2.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 546 ? t_dihedral_angle_d 2.00 SINUSOIDAL
'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ?
'X-RAY DIFFRACTION' ? ? ? 110 ? t_gen_planes 5.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 2628 ? t_it 20.00 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 1 ? t_nbd 5.00 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ?
'X-RAY DIFFRACTION' ? 24.20 ? ? ? t_other_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 432 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 2622 ? t_ideal_dist_contact 4.00 SEMIHARMONIC
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.90
_refine_ls_shell.d_res_low 3.24
_refine_ls_shell.number_reflns_all 2660
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 134
_refine_ls_shell.number_reflns_R_work 2526
_refine_ls_shell.percent_reflns_obs 98.89
_refine_ls_shell.percent_reflns_R_free 5.04
_refine_ls_shell.R_factor_all 0.2629
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.3088
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.2607
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5KX9
_struct.title 'Selective Small Molecule Inhibition of the FMN Riboswitch'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5KX9
_struct_keywords.text 'RNA, TRANSLATION, RNA-inhibitor complex'
_struct_keywords.pdbx_keywords RNA/inhibitor
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 3 ?
F N N 3 ?
G N N 3 ?
H N N 3 ?
I N N 4 ?
J N N 5 ?
K N N 4 ?
L N N 4 ?
M N N 3 ?
N N N 4 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 D K . K ? ? X A 14 X K 102 1_555 ? ? ? ? ? ? ? 2.328 ? ?
metalc2 metalc ? ? A G 16 OP2 ? ? ? 1_555 E K . K ? ? X G 16 X K 103 1_555 ? ? ? ? ? ? ? 3.458 ? ?
metalc3 metalc ? ? A A 22 OP1 ? ? ? 1_555 I MG . MG ? ? X A 22 X MG 107 1_555 ? ? ? ? ? ? ? 2.517 ? ?
metalc4 metalc ? ? A U 23 OP2 ? ? ? 1_555 I MG . MG ? ? X U 23 X MG 107 1_555 ? ? ? ? ? ? ? 2.248 ? ?
metalc5 metalc ? ? A G 28 O6 ? ? ? 1_555 H K . K ? ? X G 28 X K 106 1_555 ? ? ? ? ? ? ? 2.421 ? ?
metalc6 metalc ? ? A A 40 "O2'" ? ? ? 1_555 C K . K ? ? X A 40 X K 101 1_555 ? ? ? ? ? ? ? 3.416 ? ?
metalc7 metalc ? ? B U 33 O4 ? ? ? 1_555 K MG . MG ? ? Y U 89 Y MG 201 1_555 ? ? ? ? ? ? ? 2.103 ? ?
metalc8 metalc ? ? B A 36 OP2 ? ? ? 1_555 K MG . MG ? ? Y A 92 Y MG 201 1_555 ? ? ? ? ? ? ? 2.123 ? ?
metalc9 metalc ? ? B C 39 OP1 ? ? ? 1_555 N MG . MG ? ? Y C 95 Y MG 204 1_555 ? ? ? ? ? ? ? 2.280 ? ?
metalc10 metalc ? ? B G 41 O6 ? ? ? 1_555 M K . K ? ? Y G 97 Y K 203 1_555 ? ? ? ? ? ? ? 3.453 ? ?
hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog21 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ?
hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ?
hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog25 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog26 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ?
hydrog27 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog28 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog39 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog41 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog42 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog43 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog44 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog45 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog46 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog47 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog48 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog49 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog50 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog51 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog52 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog53 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog54 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog55 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog56 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
hydrog57 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog58 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog59 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog60 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog61 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog62 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog63 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog64 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog65 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog66 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog67 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog68 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog69 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ?
hydrog70 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog71 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog72 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog73 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog74 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog75 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog76 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog77 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog78 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog79 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog80 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog81 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog82 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog83 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog84 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog85 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ?
hydrog86 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog87 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog88 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog89 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog90 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog91 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog92 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog93 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog94 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog95 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog96 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog97 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog98 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog99 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog100 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog101 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ?
hydrog102 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog103 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog104 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog105 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog106 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog107 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog108 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog109 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog110 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
hydrog111 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software X K 101 ? 1 'binding site for residue K X 101'
AC2 Software X K 102 ? 1 'binding site for residue K X 102'
AC3 Software X K 103 ? 1 'binding site for residue K X 103'
AC4 Software X K 106 ? 1 'binding site for residue K X 106'
AC5 Software X MG 107 ? 2 'binding site for residue MG X 107'
AC6 Software X 6YG 108 ? 8 'binding site for residue 6YG X 108'
AC7 Software Y MG 201 ? 2 'binding site for residue MG Y 201'
AC8 Software Y MG 202 ? 1 'binding site for residue MG Y 202'
AC9 Software Y K 203 ? 1 'binding site for residue K Y 203'
AD1 Software Y MG 204 ? 1 'binding site for residue MG Y 204'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 1 A A 40 ? A X 40 . ? 1_555 ?
2 AC2 1 A A 14 ? A X 14 . ? 1_555 ?
3 AC3 1 G A 16 ? G X 16 . ? 1_555 ?
4 AC4 1 G A 28 ? G X 28 . ? 1_555 ?
5 AC5 2 A A 22 ? A X 22 . ? 1_555 ?
6 AC5 2 U A 23 ? U X 23 . ? 1_555 ?
7 AC6 8 G A 11 ? G X 11 . ? 1_555 ?
8 AC6 8 A A 48 ? A X 48 . ? 1_555 ?
9 AC6 8 A A 49 ? A X 49 . ? 1_555 ?
10 AC6 8 U B 5 ? U Y 61 . ? 1_555 ?
11 AC6 8 G B 6 ? G Y 62 . ? 1_555 ?
12 AC6 8 G B 28 ? G Y 84 . ? 1_555 ?
13 AC6 8 A B 29 ? A Y 85 . ? 1_555 ?
14 AC6 8 A B 43 ? A Y 99 . ? 1_555 ?
15 AC7 2 U B 33 ? U Y 89 . ? 1_555 ?
16 AC7 2 A B 36 ? A Y 92 . ? 1_555 ?
17 AC8 1 G B 12 ? G Y 68 . ? 1_555 ?
18 AC9 1 G B 41 ? G Y 97 . ? 1_555 ?
19 AD1 1 C B 39 ? C Y 95 . ? 1_555 ?
#
_atom_sites.entry_id 5KX9
_atom_sites.fract_transf_matrix[1][1] 0.014029
_atom_sites.fract_transf_matrix[1][2] 0.008100
_atom_sites.fract_transf_matrix[1][3] -0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016200
_atom_sites.fract_transf_matrix[2][3] -0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.007198
_atom_sites.fract_transf_vector[1] -0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] -0.00000
#
loop_
_atom_type.symbol
C
K
MG
N
O
P
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 1 G G X . n
A 1 2 G 2 2 2 G G X . n
A 1 3 A 3 3 3 A A X . n
A 1 4 U 4 4 4 U U X . n
A 1 5 C 5 5 5 C C X . n
A 1 6 U 6 6 6 U U X . n
A 1 7 U 7 7 7 U U X . n
A 1 8 C 8 8 8 C C X . n
A 1 9 G 9 9 9 G G X . n
A 1 10 G 10 10 10 G G X . n
A 1 11 G 11 11 11 G G X . n
A 1 12 G 12 12 12 G G X . n
A 1 13 C 13 13 13 C C X . n
A 1 14 A 14 14 14 A A X . n
A 1 15 G 15 15 15 G G X . n
A 1 16 G 16 16 16 G G X . n
A 1 17 G 17 17 17 G G X . n
A 1 18 U 18 18 18 U U X . n
A 1 19 G 19 19 19 G G X . n
A 1 20 A 20 20 20 A A X . n
A 1 21 A 21 21 21 A A X . n
A 1 22 A 22 22 22 A A X . n
A 1 23 U 23 23 23 U U X . n
A 1 24 U 24 24 24 U U X . n
A 1 25 C 25 25 25 C C X . n
A 1 26 C 26 26 26 C C X . n
A 1 27 C 27 27 27 C C X . n
A 1 28 G 28 28 28 G G X . n
A 1 29 A 29 29 29 A A X . n
A 1 30 C 30 30 30 C C X . n
A 1 31 C 31 31 31 C C X . n
A 1 32 G 32 32 32 G G X . n
A 1 33 G 33 33 33 G G X . n
A 1 34 U 34 34 34 U U X . n
A 1 35 G 35 35 35 G G X . n
A 1 36 G 36 36 36 G G X . n
A 1 37 U 37 37 37 U U X . n
A 1 38 A 38 38 38 A A X . n
A 1 39 U 39 39 39 U U X . n
A 1 40 A 40 40 40 A A X . n
A 1 41 G 41 41 41 G G X . n
A 1 42 U 42 42 42 U U X . n
A 1 43 C 43 43 43 C C X . n
A 1 44 C 44 44 44 C C X . n
A 1 45 A 45 45 45 A A X . n
A 1 46 C 46 46 46 C C X . n
A 1 47 G 47 47 47 G G X . n
A 1 48 A 48 48 48 A A X . n
A 1 49 A 49 49 49 A A X . n
A 1 50 A 50 50 50 A A X . n
A 1 51 G 51 51 51 G G X . n
A 1 52 C 52 52 52 C C X . n
A 1 53 U 53 53 53 U U X . n
A 1 54 U 54 54 ? ? ? X . n
B 2 1 G 1 57 57 G G Y . n
B 2 2 C 2 58 58 C C Y . n
B 2 3 U 3 59 59 U U Y . n
B 2 4 U 4 60 60 U U Y . n
B 2 5 U 5 61 61 U U Y . n
B 2 6 G 6 62 62 G G Y . n
B 2 7 A 7 63 63 A A Y . n
B 2 8 U 8 64 64 U U Y . n
B 2 9 U 9 65 65 U U Y . n
B 2 10 U 10 66 66 U U Y . n
B 2 11 G 11 67 67 G G Y . n
B 2 12 G 12 68 68 G G Y . n
B 2 13 U 13 69 69 U U Y . n
B 2 14 G 14 70 70 G G Y . n
B 2 15 A 15 71 71 A A Y . n
B 2 16 A 16 72 72 A A Y . n
B 2 17 A 17 73 73 A A Y . n
B 2 18 U 18 74 74 U U Y . n
B 2 19 U 19 75 75 U U Y . n
B 2 20 C 20 76 76 C C Y . n
B 2 21 C 21 77 77 C C Y . n
B 2 22 A 22 78 78 A A Y . n
B 2 23 A 23 79 79 A A Y . n
B 2 24 A 24 80 80 A A Y . n
B 2 25 A 25 81 81 A A Y . n
B 2 26 C 26 82 82 C C Y . n
B 2 27 C 27 83 83 C C Y . n
B 2 28 G 28 84 84 G G Y . n
B 2 29 A 29 85 85 A A Y . n
B 2 30 C 30 86 86 C C Y . n
B 2 31 A 31 87 87 A A Y . n
B 2 32 G 32 88 88 G G Y . n
B 2 33 U 33 89 89 U U Y . n
B 2 34 A 34 90 90 A A Y . n
B 2 35 G 35 91 91 G G Y . n
B 2 36 A 36 92 92 A A Y . n
B 2 37 G 37 93 93 G G Y . n
B 2 38 U 38 94 94 U U Y . n
B 2 39 C 39 95 95 C C Y . n
B 2 40 U 40 96 96 U U Y . n
B 2 41 G 41 97 97 G G Y . n
B 2 42 G 42 98 98 G G Y . n
B 2 43 A 43 99 99 A A Y . n
B 2 44 U 44 100 100 U U Y . n
B 2 45 G 45 101 101 G G Y . n
B 2 46 A 46 102 102 A A Y . n
B 2 47 G 47 103 103 G G Y . n
B 2 48 A 48 104 104 A A Y . n
B 2 49 G 49 105 105 G G Y . n
B 2 50 A 50 106 106 A A Y . n
B 2 51 A 51 107 107 A A Y . n
B 2 52 G 52 108 108 G G Y . n
B 2 53 A 53 109 109 A A Y . n
B 2 54 U 54 110 110 U U Y . n
B 2 55 U 55 111 111 U U Y . n
B 2 56 C 56 112 112 C C Y . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K 1 101 300 K K X .
D 3 K 1 102 306 K K X .
E 3 K 1 103 307 K K X .
F 3 K 1 104 311 K K X .
G 3 K 1 105 312 K K X .
H 3 K 1 106 320 K K X .
I 4 MG 1 107 321 MG MG X .
J 5 6YG 1 108 1 6YG SCH X .
K 4 MG 1 201 305 MG MG Y .
L 4 MG 1 202 309 MG MG Y .
M 3 K 1 203 310 K K Y .
N 4 MG 1 204 311 MG MG Y .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 7800 ?
1 MORE -56 ?
1 'SSA (A^2)' 15830 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OP1 ? A A 22 ? X A 22 ? 1_555 MG ? I MG . ? X MG 107 ? 1_555 OP2 ? A U 23 ? X U 23 ? 1_555 84.0 ?
2 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? K MG . ? Y MG 201 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 97.7 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2016-08-24
2 'Structure model' 1 1 2016-09-14
3 'Structure model' 1 2 2016-10-19
4 'Structure model' 1 3 2023-02-22
5 'Structure model' 1 4 2023-10-25
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Database references'
4 4 'Structure model' 'Derived calculations'
5 4 'Structure model' 'Structure summary'
6 5 'Structure model' 'Data collection'
7 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' database_2
3 4 'Structure model' entity
4 4 'Structure model' ndb_struct_na_base_pair
5 4 'Structure model' ndb_struct_na_base_pair_step
6 4 'Structure model' pdbx_entity_nonpoly
7 4 'Structure model' pdbx_struct_oper_list
8 4 'Structure model' struct_conn
9 5 'Structure model' chem_comp_atom
10 5 'Structure model' chem_comp_bond
11 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.name'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_entity.pdbx_description'
5 4 'Structure model' '_pdbx_entity_nonpoly.name'
6 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.11.5 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? 0.1.27 3
? phasing ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 4
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 X U 53 ? "C4'" ? A U 53 "C4'"
2 1 Y 1 X U 53 ? "O4'" ? A U 53 "O4'"
3 1 Y 1 X U 53 ? "C3'" ? A U 53 "C3'"
4 1 Y 1 X U 53 ? "O3'" ? A U 53 "O3'"
5 1 Y 1 X U 53 ? "C2'" ? A U 53 "C2'"
6 1 Y 1 X U 53 ? "O2'" ? A U 53 "O2'"
7 1 Y 1 X U 53 ? "C1'" ? A U 53 "C1'"
8 1 Y 1 X U 53 ? N1 ? A U 53 N1
9 1 Y 1 X U 53 ? C2 ? A U 53 C2
10 1 Y 1 X U 53 ? O2 ? A U 53 O2
11 1 Y 1 X U 53 ? N3 ? A U 53 N3
12 1 Y 1 X U 53 ? C4 ? A U 53 C4
13 1 Y 1 X U 53 ? O4 ? A U 53 O4
14 1 Y 1 X U 53 ? C5 ? A U 53 C5
15 1 Y 1 X U 53 ? C6 ? A U 53 C6
#
_pdbx_unobs_or_zero_occ_residues.id 1
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 1
_pdbx_unobs_or_zero_occ_residues.polymer_flag Y
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 1
_pdbx_unobs_or_zero_occ_residues.auth_asym_id X
_pdbx_unobs_or_zero_occ_residues.auth_comp_id U
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 54
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_residues.label_asym_id A
_pdbx_unobs_or_zero_occ_residues.label_comp_id U
_pdbx_unobs_or_zero_occ_residues.label_seq_id 54
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
6YG N01 N Y N 1
6YG C02 C Y N 2
6YG N03 N Y N 3
6YG C04 C Y N 4
6YG C05 C Y N 5
6YG C06 C Y N 6
6YG O07 O N N 7
6YG C08 C N S 8
6YG C09 C N N 9
6YG N10 N N N 10
6YG C11 C N N 11
6YG C12 C N N 12
6YG C13 C N N 13
6YG C14 C Y N 14
6YG S15 S Y N 15
6YG C16 C Y N 16
6YG C17 C Y N 17
6YG C18 C Y N 18
6YG C19 C N N 19
6YG C20 C Y N 20
6YG C21 C Y N 21
6YG N22 N Y N 22
6YG C23 C Y N 23
6YG N24 N Y N 24
6YG C25 C Y N 25
6YG O26 O N N 26
6YG C27 C N N 27
6YG H1 H N N 28
6YG H3 H N N 29
6YG H4 H N N 30
6YG H5 H N N 31
6YG H7 H N N 32
6YG H8 H N N 33
6YG H9 H N N 34
6YG H10 H N N 35
6YG H11 H N N 36
6YG H12 H N N 37
6YG H13 H N N 38
6YG H14 H N N 39
6YG H15 H N N 40
6YG H16 H N N 41
6YG H17 H N N 42
6YG H18 H N N 43
6YG H19 H N N 44
6YG H20 H N N 45
6YG H21 H N N 46
6YG H22 H N N 47
6YG H2 H N N 48
A OP3 O N N 49
A P P N N 50
A OP1 O N N 51
A OP2 O N N 52
A "O5'" O N N 53
A "C5'" C N N 54
A "C4'" C N R 55
A "O4'" O N N 56
A "C3'" C N S 57
A "O3'" O N N 58
A "C2'" C N R 59
A "O2'" O N N 60
A "C1'" C N R 61
A N9 N Y N 62
A C8 C Y N 63
A N7 N Y N 64
A C5 C Y N 65
A C6 C Y N 66
A N6 N N N 67
A N1 N Y N 68
A C2 C Y N 69
A N3 N Y N 70
A C4 C Y N 71
A HOP3 H N N 72
A HOP2 H N N 73
A "H5'" H N N 74
A "H5''" H N N 75
A "H4'" H N N 76
A "H3'" H N N 77
A "HO3'" H N N 78
A "H2'" H N N 79
A "HO2'" H N N 80
A "H1'" H N N 81
A H8 H N N 82
A H61 H N N 83
A H62 H N N 84
A H2 H N N 85
C OP3 O N N 86
C P P N N 87
C OP1 O N N 88
C OP2 O N N 89
C "O5'" O N N 90
C "C5'" C N N 91
C "C4'" C N R 92
C "O4'" O N N 93
C "C3'" C N S 94
C "O3'" O N N 95
C "C2'" C N R 96
C "O2'" O N N 97
C "C1'" C N R 98
C N1 N N N 99
C C2 C N N 100
C O2 O N N 101
C N3 N N N 102
C C4 C N N 103
C N4 N N N 104
C C5 C N N 105
C C6 C N N 106
C HOP3 H N N 107
C HOP2 H N N 108
C "H5'" H N N 109
C "H5''" H N N 110
C "H4'" H N N 111
C "H3'" H N N 112
C "HO3'" H N N 113
C "H2'" H N N 114
C "HO2'" H N N 115
C "H1'" H N N 116
C H41 H N N 117
C H42 H N N 118
C H5 H N N 119
C H6 H N N 120
G OP3 O N N 121
G P P N N 122
G OP1 O N N 123
G OP2 O N N 124
G "O5'" O N N 125
G "C5'" C N N 126
G "C4'" C N R 127
G "O4'" O N N 128
G "C3'" C N S 129
G "O3'" O N N 130
G "C2'" C N R 131
G "O2'" O N N 132
G "C1'" C N R 133
G N9 N Y N 134
G C8 C Y N 135
G N7 N Y N 136
G C5 C Y N 137
G C6 C N N 138
G O6 O N N 139
G N1 N N N 140
G C2 C N N 141
G N2 N N N 142
G N3 N N N 143
G C4 C Y N 144
G HOP3 H N N 145
G HOP2 H N N 146
G "H5'" H N N 147
G "H5''" H N N 148
G "H4'" H N N 149
G "H3'" H N N 150
G "HO3'" H N N 151
G "H2'" H N N 152
G "HO2'" H N N 153
G "H1'" H N N 154
G H8 H N N 155
G H1 H N N 156
G H21 H N N 157
G H22 H N N 158
K K K N N 159
MG MG MG N N 160
U OP3 O N N 161
U P P N N 162
U OP1 O N N 163
U OP2 O N N 164
U "O5'" O N N 165
U "C5'" C N N 166
U "C4'" C N R 167
U "O4'" O N N 168
U "C3'" C N S 169
U "O3'" O N N 170
U "C2'" C N R 171
U "O2'" O N N 172
U "C1'" C N R 173
U N1 N N N 174
U C2 C N N 175
U O2 O N N 176
U N3 N N N 177
U C4 C N N 178
U O4 O N N 179
U C5 C N N 180
U C6 C N N 181
U HOP3 H N N 182
U HOP2 H N N 183
U "H5'" H N N 184
U "H5''" H N N 185
U "H4'" H N N 186
U "H3'" H N N 187
U "HO3'" H N N 188
U "H2'" H N N 189
U "HO2'" H N N 190
U "H1'" H N N 191
U H3 H N N 192
U H5 H N N 193
U H6 H N N 194
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6YG C12 C11 sing N N 1
6YG C12 C13 sing N N 2
6YG C11 N10 sing N N 3
6YG C13 C08 sing N N 4
6YG N10 C19 sing N N 5
6YG N10 C09 sing N N 6
6YG C08 C09 sing N N 7
6YG C08 C02 sing N N 8
6YG C19 C20 sing N N 9
6YG N01 C02 doub Y N 10
6YG N01 C06 sing Y N 11
6YG C02 N03 sing Y N 12
6YG O07 C06 sing N N 13
6YG C06 C05 doub Y N 14
6YG C20 C25 doub Y N 15
6YG C20 C21 sing Y N 16
6YG N03 C04 doub Y N 17
6YG C25 N24 sing Y N 18
6YG C05 C04 sing Y N 19
6YG C21 N22 doub Y N 20
6YG C04 C14 sing N N 21
6YG N24 C23 doub Y N 22
6YG N22 C23 sing Y N 23
6YG C14 S15 sing Y N 24
6YG C14 C18 doub Y N 25
6YG C23 O26 sing N N 26
6YG S15 C16 sing Y N 27
6YG C18 C17 sing Y N 28
6YG O26 C27 sing N N 29
6YG C16 C17 doub Y N 30
6YG C05 H1 sing N N 31
6YG C08 H3 sing N N 32
6YG C09 H4 sing N N 33
6YG C09 H5 sing N N 34
6YG C11 H7 sing N N 35
6YG C11 H8 sing N N 36
6YG C12 H9 sing N N 37
6YG C12 H10 sing N N 38
6YG C13 H11 sing N N 39
6YG C13 H12 sing N N 40
6YG C16 H13 sing N N 41
6YG C17 H14 sing N N 42
6YG C18 H15 sing N N 43
6YG C19 H16 sing N N 44
6YG C19 H17 sing N N 45
6YG C21 H18 sing N N 46
6YG C25 H19 sing N N 47
6YG C27 H20 sing N N 48
6YG C27 H21 sing N N 49
6YG C27 H22 sing N N 50
6YG O07 H2 sing N N 51
A OP3 P sing N N 52
A OP3 HOP3 sing N N 53
A P OP1 doub N N 54
A P OP2 sing N N 55
A P "O5'" sing N N 56
A OP2 HOP2 sing N N 57
A "O5'" "C5'" sing N N 58
A "C5'" "C4'" sing N N 59
A "C5'" "H5'" sing N N 60
A "C5'" "H5''" sing N N 61
A "C4'" "O4'" sing N N 62
A "C4'" "C3'" sing N N 63
A "C4'" "H4'" sing N N 64
A "O4'" "C1'" sing N N 65
A "C3'" "O3'" sing N N 66
A "C3'" "C2'" sing N N 67
A "C3'" "H3'" sing N N 68
A "O3'" "HO3'" sing N N 69
A "C2'" "O2'" sing N N 70
A "C2'" "C1'" sing N N 71
A "C2'" "H2'" sing N N 72
A "O2'" "HO2'" sing N N 73
A "C1'" N9 sing N N 74
A "C1'" "H1'" sing N N 75
A N9 C8 sing Y N 76
A N9 C4 sing Y N 77
A C8 N7 doub Y N 78
A C8 H8 sing N N 79
A N7 C5 sing Y N 80
A C5 C6 sing Y N 81
A C5 C4 doub Y N 82
A C6 N6 sing N N 83
A C6 N1 doub Y N 84
A N6 H61 sing N N 85
A N6 H62 sing N N 86
A N1 C2 sing Y N 87
A C2 N3 doub Y N 88
A C2 H2 sing N N 89
A N3 C4 sing Y N 90
C OP3 P sing N N 91
C OP3 HOP3 sing N N 92
C P OP1 doub N N 93
C P OP2 sing N N 94
C P "O5'" sing N N 95
C OP2 HOP2 sing N N 96
C "O5'" "C5'" sing N N 97
C "C5'" "C4'" sing N N 98
C "C5'" "H5'" sing N N 99
C "C5'" "H5''" sing N N 100
C "C4'" "O4'" sing N N 101
C "C4'" "C3'" sing N N 102
C "C4'" "H4'" sing N N 103
C "O4'" "C1'" sing N N 104
C "C3'" "O3'" sing N N 105
C "C3'" "C2'" sing N N 106
C "C3'" "H3'" sing N N 107
C "O3'" "HO3'" sing N N 108
C "C2'" "O2'" sing N N 109
C "C2'" "C1'" sing N N 110
C "C2'" "H2'" sing N N 111
C "O2'" "HO2'" sing N N 112
C "C1'" N1 sing N N 113
C "C1'" "H1'" sing N N 114
C N1 C2 sing N N 115
C N1 C6 sing N N 116
C C2 O2 doub N N 117
C C2 N3 sing N N 118
C N3 C4 doub N N 119
C C4 N4 sing N N 120
C C4 C5 sing N N 121
C N4 H41 sing N N 122
C N4 H42 sing N N 123
C C5 C6 doub N N 124
C C5 H5 sing N N 125
C C6 H6 sing N N 126
G OP3 P sing N N 127
G OP3 HOP3 sing N N 128
G P OP1 doub N N 129
G P OP2 sing N N 130
G P "O5'" sing N N 131
G OP2 HOP2 sing N N 132
G "O5'" "C5'" sing N N 133
G "C5'" "C4'" sing N N 134
G "C5'" "H5'" sing N N 135
G "C5'" "H5''" sing N N 136
G "C4'" "O4'" sing N N 137
G "C4'" "C3'" sing N N 138
G "C4'" "H4'" sing N N 139
G "O4'" "C1'" sing N N 140
G "C3'" "O3'" sing N N 141
G "C3'" "C2'" sing N N 142
G "C3'" "H3'" sing N N 143
G "O3'" "HO3'" sing N N 144
G "C2'" "O2'" sing N N 145
G "C2'" "C1'" sing N N 146
G "C2'" "H2'" sing N N 147
G "O2'" "HO2'" sing N N 148
G "C1'" N9 sing N N 149
G "C1'" "H1'" sing N N 150
G N9 C8 sing Y N 151
G N9 C4 sing Y N 152
G C8 N7 doub Y N 153
G C8 H8 sing N N 154
G N7 C5 sing Y N 155
G C5 C6 sing N N 156
G C5 C4 doub Y N 157
G C6 O6 doub N N 158
G C6 N1 sing N N 159
G N1 C2 sing N N 160
G N1 H1 sing N N 161
G C2 N2 sing N N 162
G C2 N3 doub N N 163
G N2 H21 sing N N 164
G N2 H22 sing N N 165
G N3 C4 sing N N 166
U OP3 P sing N N 167
U OP3 HOP3 sing N N 168
U P OP1 doub N N 169
U P OP2 sing N N 170
U P "O5'" sing N N 171
U OP2 HOP2 sing N N 172
U "O5'" "C5'" sing N N 173
U "C5'" "C4'" sing N N 174
U "C5'" "H5'" sing N N 175
U "C5'" "H5''" sing N N 176
U "C4'" "O4'" sing N N 177
U "C4'" "C3'" sing N N 178
U "C4'" "H4'" sing N N 179
U "O4'" "C1'" sing N N 180
U "C3'" "O3'" sing N N 181
U "C3'" "C2'" sing N N 182
U "C3'" "H3'" sing N N 183
U "O3'" "HO3'" sing N N 184
U "C2'" "O2'" sing N N 185
U "C2'" "C1'" sing N N 186
U "C2'" "H2'" sing N N 187
U "O2'" "HO2'" sing N N 188
U "C1'" N1 sing N N 189
U "C1'" "H1'" sing N N 190
U N1 C2 sing N N 191
U N1 C6 sing N N 192
U C2 O2 doub N N 193
U C2 N3 sing N N 194
U N3 C4 sing N N 195
U N3 H3 sing N N 196
U C4 O4 doub N N 197
U C4 C5 sing N N 198
U C5 C6 doub N N 199
U C5 H5 sing N N 200
U C6 H6 sing N N 201
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
5KX9 'double helix'
5KX9 'a-form double helix'
5KX9 'hairpin loop'
5KX9 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A G 1 1_555 B C 56 1_555 -0.034 0.201 0.797 1.864 -27.234 6.741 1 X_G1:C112_Y X 1 ? Y 112 ? 19 1
1 A G 2 1_555 B U 55 1_555 -1.633 -0.289 -0.025 -6.154 -17.344 6.276 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1
1 A A 3 1_555 B U 54 1_555 -0.984 0.212 0.348 -2.148 -19.993 8.477 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1
1 A U 4 1_555 B A 53 1_555 -0.426 -0.038 0.110 -0.516 -17.166 4.505 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1
1 A C 5 1_555 B G 52 1_555 1.289 -0.391 0.200 -1.955 -9.842 2.418 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1
1 A U 6 1_555 B A 51 1_555 -0.114 -0.055 0.225 -0.502 -13.641 2.347 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1
1 A U 7 1_555 B A 50 1_555 -0.014 0.003 -0.092 7.697 -15.848 4.511 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1
1 A C 8 1_555 B G 49 1_555 0.378 -0.129 0.117 2.186 -17.195 3.935 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1
1 A G 9 1_555 B A 48 1_555 6.474 -4.162 0.637 -29.411 -46.116 -6.988 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10
1 A G 10 1_555 A G 47 1_555 -4.763 -1.754 0.008 28.013 -9.522 74.031 10 X_G10:G47_X X 10 ? X 47 ? ? ?
1 A G 33 1_555 A C 46 1_555 -0.642 -0.017 0.452 7.122 -18.887 4.788 11 X_G33:C46_X X 33 ? X 46 ? 19 1
1 A U 34 1_555 A A 45 1_555 0.012 -0.009 -0.150 7.737 -21.981 4.739 12 X_U34:A45_X X 34 ? X 45 ? 20 1
1 A G 35 1_555 A C 44 1_555 -0.818 -0.256 0.135 -7.622 -17.861 1.838 13 X_G35:C44_X X 35 ? X 44 ? 19 1
1 A G 36 1_555 A C 43 1_555 -0.606 -0.341 -0.021 -14.389 -16.309 -0.338 14 X_G36:C43_X X 36 ? X 43 ? 19 1
1 A U 37 1_555 A A 40 1_555 4.317 -2.378 -0.214 4.376 -1.424 -96.219 15 X_U37:A40_X X 37 ? X 40 ? 24 4
1 A A 38 1_555 B G 14 1_555 -6.603 -4.263 0.932 -12.740 17.304 -5.002 16 X_A38:G70_Y X 38 ? Y 70 ? 11 10
1 B A 17 1_555 B U 13 1_555 -4.267 -2.015 0.907 -1.701 7.836 -92.217 17 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4
1 B C 20 1_555 B G 12 1_555 -0.148 0.061 0.244 13.373 -9.374 1.695 18 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1
1 B C 21 1_555 B G 11 1_555 0.274 -0.121 0.020 6.827 -15.814 3.958 19 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1
1 B A 22 1_555 B U 10 1_555 -0.141 -0.087 0.274 -10.135 -8.682 6.293 20 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1
1 B A 23 1_555 B U 9 1_555 0.460 -0.063 -0.017 -6.824 -17.931 5.627 21 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1
1 B A 24 1_555 B U 8 1_555 0.002 0.047 0.466 1.181 -1.823 15.588 22 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1
1 B A 25 1_555 A U 42 1_555 -0.010 -0.129 -0.420 -4.368 -10.955 -3.910 23 Y_A81:U42_X Y 81 ? X 42 ? 20 1
1 B C 26 1_555 A G 41 1_555 0.427 -0.016 0.202 1.280 -21.964 5.326 24 Y_C82:G41_X Y 82 ? X 41 ? 19 1
1 B C 27 1_555 A G 32 1_555 0.577 -0.219 0.104 -3.923 -10.241 -2.001 25 Y_C83:G32_X Y 83 ? X 32 ? 19 1
1 B G 28 1_555 A C 31 1_555 -0.073 -0.047 0.165 10.712 -12.995 2.436 26 Y_G84:C31_X Y 84 ? X 31 ? 19 1
1 B G 37 1_555 A C 30 1_555 -0.545 -0.239 0.354 6.593 -19.895 2.306 27 Y_G93:C30_X Y 93 ? X 30 ? 19 1
1 B U 38 1_555 A A 29 1_555 -0.457 -0.120 -0.177 10.068 -15.788 -4.969 28 Y_U94:A29_X Y 94 ? X 29 ? 20 1
1 A C 13 1_555 A G 28 1_555 4.062 0.764 1.148 -14.786 -10.229 51.769 29 X_C13:G28_X X 13 ? X 28 ? ? 5
1 A G 15 1_555 A C 27 1_555 -0.528 -0.013 -0.017 3.117 -7.715 4.946 30 X_G15:C27_X X 15 ? X 27 ? 19 1
1 A G 16 1_555 A C 26 1_555 -0.324 -0.069 -0.090 -5.852 -18.749 2.038 31 X_G16:C26_X X 16 ? X 26 ? 19 1
1 A G 17 1_555 A C 25 1_555 0.186 -0.034 -0.047 -20.187 -8.633 -3.785 32 X_G17:C25_X X 17 ? X 25 ? 19 1
1 A U 18 1_555 A A 22 1_555 4.313 -2.120 0.752 2.940 12.499 -91.705 33 X_U18:A22_X X 18 ? X 22 ? 24 4
1 A G 19 1_555 B A 34 1_555 6.974 -4.900 0.431 18.748 19.014 3.650 34 X_G19:A90_Y X 19 ? Y 90 ? 11 10
1 A A 49 1_555 B U 4 1_555 -0.244 0.080 0.081 12.136 -10.916 -1.842 35 X_A49:U60_Y X 49 ? Y 60 ? 20 1
1 A A 50 1_555 B U 3 1_555 0.673 -0.081 -0.234 4.675 -20.443 0.325 36 X_A50:U59_Y X 50 ? Y 59 ? 20 1
1 A G 51 1_555 B C 2 1_555 0.574 -0.224 0.220 -4.904 -17.277 -2.648 37 X_G51:C58_Y X 51 ? Y 58 ? 19 1
1 A C 52 1_555 B G 1 1_555 0.555 -0.041 0.402 -10.201 -18.185 4.966 38 X_C52:G57_Y X 52 ? Y 57 ? 19 1
1 B A 29 1_555 B G 42 1_555 0.138 1.412 -0.451 10.738 -13.598 -12.603 39 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1
1 B C 30 1_555 B G 41 1_555 0.012 0.024 -0.057 17.344 -24.411 4.156 40 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1
1 B A 31 1_555 B U 40 1_555 -0.062 -0.168 0.480 -5.028 -28.719 4.443 41 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1
1 B G 32 1_555 B C 39 1_555 -0.352 -0.106 0.427 -17.041 -20.345 -1.135 42 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1
1 B U 33 1_555 B A 36 1_555 4.373 -2.456 0.021 9.799 3.503 -93.894 43 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 -0.171 -1.547 3.261 -1.869 7.700 32.341 -3.917 0.004 2.833 13.572
3.294 33.272 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ?
1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.108 -0.973 3.081 -4.854 5.715 34.739 -2.366 -0.476 2.879 9.436
8.014 35.514 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ?
1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 -0.416 -1.921 3.166 -0.075 5.838 33.912 -4.086 0.693 2.807 9.917
0.128 34.397 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ?
1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.406 -1.623 3.277 0.588 4.137 35.341 -3.243 -0.581 3.079 6.784
-0.965 35.580 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ?
1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -0.664 -2.332 3.052 -0.261 5.690 24.270 -6.859 1.472 2.456 13.300
0.610 24.920 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ?
1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 0.205 -0.977 3.032 0.823 1.555 31.766 -2.045 -0.236 2.986 2.839
-1.501 31.814 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ?
1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.436 -1.529 3.360 0.856 5.173 35.336 -3.239 -0.588 3.121 8.465
-1.401 35.711 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ?
1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.825 -0.618 4.304 5.724 25.117 49.988 -2.467 3.428 3.352 27.712
-6.315 55.854 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ?
1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 0.947 -4.133 -2.459 133.179 -89.453 36.212 -2.155 -0.571 2.159 -48.471
-72.165 161.410 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ?
1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.857 -2.056 3.192 -1.283 0.757 30.913 -3.995 1.365 3.175 1.418
2.405 30.948 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ?
1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.244 -1.428 3.457 -4.018 15.629 28.887 -5.059 -0.225 2.403 28.680
7.374 33.005 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ?
1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.459 -1.875 3.429 3.709 7.605 37.517 -3.798 -0.235 3.036 11.643
-5.679 38.426 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ?
1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.883 -1.314 2.842 5.939 4.386 84.472 -1.062 0.773 2.729 3.257
-4.410 84.733 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ?
1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -0.956 -0.682 2.991 -6.237 1.351 0.270 -13.235 -24.270 0.916 18.539
85.592 6.388 14 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ?
1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 3.240 -1.779 3.193 1.409 3.039 69.109 -1.675 -2.803 3.179 2.678
-1.242 69.180 15 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ?
1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.404 -1.543 3.217 -0.846 7.209 38.922 -3.078 0.503 2.904 10.706
1.256 39.567 16 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ?
1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.291 -1.524 3.251 -4.081 16.423 33.046 -4.384 -0.034 2.286 26.797
6.659 37.019 17 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ?
1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.122 -1.263 3.215 5.381 6.944 33.398 -3.151 0.586 2.886 11.829
-9.168 34.502 18 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ?
1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.545 -0.773 2.978 -2.617 -0.603 27.729 -1.475 -1.699 2.931 -1.255
5.445 27.856 19 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ?
1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.424 -3.163 3.368 8.188 6.376 23.826 -8.604 2.951 2.198 14.589
-18.736 25.958 20 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ?
1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.094 -1.602 3.037 -3.027 4.707 38.552 -2.910 -1.967 2.740 7.084
4.555 38.941 21 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ?
1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -0.731 -1.357 3.499 0.965 2.768 33.976 -2.776 1.408 3.360 4.726
-1.648 34.099 22 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ?
1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.232 0.137 2.975 -0.622 12.784 27.028 -2.183 -0.569 2.752 25.609
1.246 29.854 23 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ?
1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.094 -1.938 3.158 -1.385 10.857 23.827 -6.724 -2.727 2.029 24.696
3.151 26.188 24 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ?
1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -1.089 -1.409 3.048 -0.523 3.919 36.305 -2.742 1.673 2.900 6.266
0.836 36.513 25 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ?
1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.777 -1.230 3.890 -5.716 -0.546 55.078 -1.286 -2.303 3.714 -0.589
6.162 55.353 26 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ?
1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -6.195 0.106 2.713 5.058 1.946 34.062 -0.031 10.998 1.805 3.295
-8.567 34.478 27 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ?
1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.863 -2.387 3.425 3.228 10.090 25.286 -7.362 -1.081 2.402 21.864
-6.996 27.382 28 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ?
1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.358 -2.162 3.450 1.386 7.677 39.555 -4.000 0.676 2.983 11.211
-2.025 40.287 29 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ?
1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.510 -1.890 2.925 -0.317 -0.852 72.856 -1.567 2.104 2.954 -0.718
0.267 72.861 30 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ?
1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 2.004 -0.775 2.830 4.307 3.046 -0.313 -2.278 36.852 -1.019 -50.006
70.712 -5.285 31 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ?
1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.406 -1.128 3.399 0.376 5.049 37.693 -2.384 0.671 3.223 7.772
-0.578 38.019 32 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ?
1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.175 -1.719 3.349 -2.611 9.883 31.931 -4.532 -0.105 2.717 17.416
4.602 33.487 33 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ?
1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.655 -1.612 3.267 3.751 4.059 32.708 -3.494 -0.530 3.103 7.144
-6.601 33.159 34 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ?
1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.221 -1.180 2.956 -4.346 6.615 32.653 -2.960 -2.715 2.497 11.555
7.591 33.573 35 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ?
1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.157 -1.619 3.567 -4.463 16.837 33.506 -4.666 -0.329 2.501 27.054
7.171 37.647 36 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ?
1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.178 -1.611 3.248 3.221 10.606 37.115 -3.640 0.635 2.681 16.223
-4.928 38.679 37 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ?
1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.231 -1.072 2.791 6.015 -1.147 80.656 -0.802 1.080 2.722 -0.885
-4.641 80.849 38 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'POTASSIUM ION' K
4 'MAGNESIUM ION' MG
5 '(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol' 6YG
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 5C45
_pdbx_initial_refinement_model.details ?
#