HEADER HYDROLASE/HYDROLASE INHIBITOR 20-JUL-16 5KXA TITLE SELECTIVE INHIBITION OF AUTOTAXIN IS EFFECTIVE IN MOUSE MODELS OF TITLE 2 LIVER FIBROSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 6 EC: 3.1.4.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENPP2, ATX, PDNP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ENPP2, AUTOTAXIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.STEIN,G.BAIN,J.H.HUTCHINSON,J.F.EVANS REVDAT 4 04-OCT-23 5KXA 1 HETSYN REVDAT 3 29-JUL-20 5KXA 1 COMPND REMARK HETNAM SITE REVDAT 2 21-DEC-16 5KXA 1 JRNL REVDAT 1 09-NOV-16 5KXA 0 JRNL AUTH G.BAIN,K.E.SHANNON,F.HUANG,J.DARLINGTON,L.GOULET, JRNL AUTH 2 P.PRODANOVICH,G.L.MA,A.M.SANTINI,A.J.STEIN,D.LONERGAN, JRNL AUTH 3 C.D.KING,I.CALDERON,A.LAI,J.H.HUTCHINSON,J.F.EVANS JRNL TITL SELECTIVE INHIBITION OF AUTOTAXIN IS EFFICACIOUS IN MOUSE JRNL TITL 2 MODELS OF LIVER FIBROSIS. JRNL REF J. PHARMACOL. EXP. THER. V. 360 1 2017 JRNL REFN ESSN 1521-0103 JRNL PMID 27754931 JRNL DOI 10.1124/JPET.116.237156 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 19537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1360 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : -1.10000 REMARK 3 B13 (A**2) : 1.25000 REMARK 3 B23 (A**2) : 0.25000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6153 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5487 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8394 ; 1.678 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12626 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 7.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;36.226 ;23.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;17.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 896 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6976 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1473 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3007 ; 3.378 ; 5.491 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3006 ; 3.379 ; 5.490 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3753 ; 4.855 ; 8.231 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3753 ; 4.855 ; 8.232 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3146 ; 3.403 ; 5.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3143 ; 3.400 ; 5.591 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4629 ; 4.864 ; 8.321 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6832 ; 6.423 ;43.842 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6833 ; 6.423 ;43.844 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 65.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 1.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZGA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M SODIUM ACETATE PH REMARK 280 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 CYS A 10 REMARK 465 GLN A 11 REMARK 465 ILE A 12 REMARK 465 ILE A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 THR A 17 REMARK 465 PHE A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 ILE A 24 REMARK 465 CYS A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 HIS A 31 REMARK 465 ARG A 32 REMARK 465 ILE A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 38 REMARK 465 TRP A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 GLY A 42 REMARK 465 PRO A 43 REMARK 465 PRO A 44 REMARK 465 THR A 45 REMARK 465 VAL A 46 REMARK 465 LEU A 47 REMARK 465 SER A 48 REMARK 465 ASP A 49 REMARK 465 SER A 50 REMARK 465 PRO A 51 REMARK 465 TRP A 52 REMARK 465 THR A 53 REMARK 465 ALA A 54 REMARK 465 ILE A 55 REMARK 465 SER A 56 REMARK 465 GLU A 68 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 ASP A 73 REMARK 465 LEU A 459 REMARK 465 ASP A 460 REMARK 465 VAL A 461 REMARK 465 TYR A 462 REMARK 465 LYS A 463 REMARK 465 LYS A 464 REMARK 465 PRO A 465 REMARK 465 SER A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 CYS A 469 REMARK 465 CYS A 567 REMARK 465 THR A 568 REMARK 465 CYS A 569 REMARK 465 ASP A 570 REMARK 465 ASP A 571 REMARK 465 LYS A 572 REMARK 465 VAL A 573 REMARK 465 GLU A 574 REMARK 465 PRO A 575 REMARK 465 LYS A 576 REMARK 465 ASN A 577 REMARK 465 LYS A 578 REMARK 465 LEU A 579 REMARK 465 ASP A 580 REMARK 465 GLU A 581 REMARK 465 LEU A 582 REMARK 465 ASN A 583 REMARK 465 LYS A 584 REMARK 465 ARG A 585 REMARK 465 LEU A 586 REMARK 465 HIS A 587 REMARK 465 THR A 588 REMARK 465 LYS A 589 REMARK 465 GLY A 590 REMARK 465 SER A 591 REMARK 465 GLU A 641 REMARK 465 VAL A 642 REMARK 465 SER A 643 REMARK 465 SER A 644 REMARK 465 VAL A 645 REMARK 465 PRO A 646 REMARK 465 ASP A 647 REMARK 465 HIS A 648 REMARK 465 LEU A 649 REMARK 465 THR A 650 REMARK 465 SER A 651 REMARK 465 SER A 861 REMARK 465 GLU A 862 REMARK 465 ILE A 863 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 HIS A 88 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ASP A 106 CG OD1 OD2 REMARK 470 VAL A 111 CG1 CG2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 VAL A 162 CG1 CG2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 278 CG1 CG2 REMARK 470 SER A 314 OG REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 321 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 ASN A 379 CG OD1 ND2 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 ASP A 418 CG OD1 OD2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 PHE A 470 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 520 CG CD CE NZ REMARK 470 ARG A 541 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 560 CG CD OE1 NE2 REMARK 470 GLU A 594 CG CD OE1 OE2 REMARK 470 ARG A 595 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 607 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 GLN A 639 CG CD OE1 NE2 REMARK 470 VAL A 657 CG1 CG2 REMARK 470 SER A 662 OG REMARK 470 LYS A 671 CG CD CE NZ REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 TYR A 685 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 694 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 722 CG CD CE NZ REMARK 470 LYS A 784 CG CD CE NZ REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 LYS A 841 CG CD CE NZ REMARK 470 TYR A 859 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 525 C1 NAG A 901 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 71.46 -102.87 REMARK 500 CYS A 76 23.20 -145.36 REMARK 500 SER A 85 10.99 -142.94 REMARK 500 LEU A 95 75.83 -105.77 REMARK 500 ALA A 155 99.98 -63.10 REMARK 500 PRO A 164 109.27 -50.99 REMARK 500 PRO A 204 -147.74 -79.32 REMARK 500 ASN A 231 -19.30 -49.22 REMARK 500 ASP A 239 62.14 38.29 REMARK 500 ASP A 297 -14.11 -47.33 REMARK 500 ARG A 369 63.26 -106.87 REMARK 500 SER A 374 -25.44 -39.83 REMARK 500 THR A 413 -73.55 -71.96 REMARK 500 ALA A 436 -38.29 -134.12 REMARK 500 ARG A 450 138.21 -39.45 REMARK 500 ARG A 451 1.37 82.26 REMARK 500 ASP A 478 128.63 -29.38 REMARK 500 LYS A 496 172.49 -57.98 REMARK 500 LYS A 498 49.04 33.92 REMARK 500 MET A 557 -33.45 -138.54 REMARK 500 GLN A 639 34.17 -98.09 REMARK 500 SER A 677 -152.99 -119.48 REMARK 500 TYR A 685 -13.72 -42.59 REMARK 500 GLU A 758 115.07 -39.61 REMARK 500 TRP A 815 -28.27 -166.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 901 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 THR A 210 OG1 129.5 REMARK 620 3 ASP A 359 OD2 111.8 100.8 REMARK 620 4 HIS A 360 NE2 119.0 100.5 85.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 312 OD1 REMARK 620 2 HIS A 316 NE2 80.2 REMARK 620 3 HIS A 475 NE2 74.5 99.4 REMARK 620 4 PO4 A 906 O2 163.3 116.4 102.7 REMARK 620 5 PO4 A 906 O3 94.5 151.3 106.4 70.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 740 OD1 REMARK 620 2 ASP A 742 OD1 69.9 REMARK 620 3 ASP A 744 OD1 66.1 68.8 REMARK 620 4 LEU A 746 O 84.4 143.7 77.6 REMARK 620 5 ASP A 748 OD1 104.0 87.8 156.5 124.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZG7 RELATED DB: PDB REMARK 900 NEW COMPOUND WITH AUTOTAXIN REMARK 900 RELATED ID: 4ZG6 RELATED DB: PDB REMARK 900 NEW COMPOUND WITH AUTOTAXIN REMARK 900 RELATED ID: 4ZG9 RELATED DB: PDB REMARK 900 NEW COMPOUND WITH AUTOTAXIN REMARK 900 RELATED ID: 4ZGA RELATED DB: PDB REMARK 900 NEW COMPOUND WITH AUTOTAXIN DBREF 5KXA A 1 863 UNP Q13822 ENPP2_HUMAN 1 863 SEQADV 5KXA ALA A 54 UNP Q13822 ASN 54 ENGINEERED MUTATION SEQADV 5KXA ALA A 411 UNP Q13822 ASN 411 ENGINEERED MUTATION SEQRES 1 A 863 MET ALA ARG ARG SER SER PHE GLN SER CYS GLN ILE ILE SEQRES 2 A 863 SER LEU PHE THR PHE ALA VAL GLY VAL ASN ILE CYS LEU SEQRES 3 A 863 GLY PHE THR ALA HIS ARG ILE LYS ARG ALA GLU GLY TRP SEQRES 4 A 863 GLU GLU GLY PRO PRO THR VAL LEU SER ASP SER PRO TRP SEQRES 5 A 863 THR ALA ILE SER GLY SER CYS LYS GLY ARG CYS PHE GLU SEQRES 6 A 863 LEU GLN GLU ALA GLY PRO PRO ASP CYS ARG CYS ASP ASN SEQRES 7 A 863 LEU CYS LYS SER TYR THR SER CYS CYS HIS ASP PHE ASP SEQRES 8 A 863 GLU LEU CYS LEU LYS THR ALA ARG GLY TRP GLU CYS THR SEQRES 9 A 863 LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU GLU ASN ALA SEQRES 10 A 863 CYS HIS CYS SER GLU ASP CYS LEU ALA ARG GLY ASP CYS SEQRES 11 A 863 CYS THR ASN TYR GLN VAL VAL CYS LYS GLY GLU SER HIS SEQRES 12 A 863 TRP VAL ASP ASP ASP CYS GLU GLU ILE LYS ALA ALA GLU SEQRES 13 A 863 CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU ILE ILE PHE SEQRES 14 A 863 SER VAL ASP GLY PHE ARG ALA SER TYR MET LYS LYS GLY SEQRES 15 A 863 SER LYS VAL MET PRO ASN ILE GLU LYS LEU ARG SER CYS SEQRES 16 A 863 GLY THR HIS SER PRO TYR MET ARG PRO VAL TYR PRO THR SEQRES 17 A 863 LYS THR PHE PRO ASN LEU TYR THR LEU ALA THR GLY LEU SEQRES 18 A 863 TYR PRO GLU SER HIS GLY ILE VAL GLY ASN SER MET TYR SEQRES 19 A 863 ASP PRO VAL PHE ASP ALA THR PHE HIS LEU ARG GLY ARG SEQRES 20 A 863 GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY GLN PRO LEU SEQRES 21 A 863 TRP ILE THR ALA THR LYS GLN GLY VAL LYS ALA GLY THR SEQRES 22 A 863 PHE PHE TRP SER VAL VAL ILE PRO HIS GLU ARG ARG ILE SEQRES 23 A 863 LEU THR ILE LEU GLN TRP LEU THR LEU PRO ASP HIS GLU SEQRES 24 A 863 ARG PRO SER VAL TYR ALA PHE TYR SER GLU GLN PRO ASP SEQRES 25 A 863 PHE SER GLY HIS LYS TYR GLY PRO PHE GLY PRO GLU MET SEQRES 26 A 863 THR ASN PRO LEU ARG GLU ILE ASP LYS ILE VAL GLY GLN SEQRES 27 A 863 LEU MET ASP GLY LEU LYS GLN LEU LYS LEU HIS ARG CYS SEQRES 28 A 863 VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY MET GLU ASP SEQRES 29 A 863 VAL THR CYS ASP ARG THR GLU PHE LEU SER ASN TYR LEU SEQRES 30 A 863 THR ASN VAL ASP ASP ILE THR LEU VAL PRO GLY THR LEU SEQRES 31 A 863 GLY ARG ILE ARG SER LYS PHE SER ASN ASN ALA LYS TYR SEQRES 32 A 863 ASP PRO LYS ALA ILE ILE ALA ALA LEU THR CYS LYS LYS SEQRES 33 A 863 PRO ASP GLN HIS PHE LYS PRO TYR LEU LYS GLN HIS LEU SEQRES 34 A 863 PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG ARG ILE GLU SEQRES 35 A 863 ASP ILE HIS LEU LEU VAL GLU ARG ARG TRP HIS VAL ALA SEQRES 36 A 863 ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO SER GLY LYS SEQRES 37 A 863 CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP ASN LYS VAL SEQRES 38 A 863 ASN SER MET GLN THR VAL PHE VAL GLY TYR GLY SER THR SEQRES 39 A 863 PHE LYS TYR LYS THR LYS VAL PRO PRO PHE GLU ASN ILE SEQRES 40 A 863 GLU LEU TYR ASN VAL MET CYS ASP LEU LEU GLY LEU LYS SEQRES 41 A 863 PRO ALA PRO ASN ASN GLY THR HIS GLY SER LEU ASN HIS SEQRES 42 A 863 LEU LEU ARG THR ASN THR PHE ARG PRO THR MET PRO GLU SEQRES 43 A 863 GLU VAL THR ARG PRO ASN TYR PRO GLY ILE MET TYR LEU SEQRES 44 A 863 GLN SER ASP PHE ASP LEU GLY CYS THR CYS ASP ASP LYS SEQRES 45 A 863 VAL GLU PRO LYS ASN LYS LEU ASP GLU LEU ASN LYS ARG SEQRES 46 A 863 LEU HIS THR LYS GLY SER THR GLU GLU ARG HIS LEU LEU SEQRES 47 A 863 TYR GLY ARG PRO ALA VAL LEU TYR ARG THR ARG TYR ASP SEQRES 48 A 863 ILE LEU TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU SEQRES 49 A 863 ILE PHE LEU MET PRO LEU TRP THR SER TYR THR VAL SER SEQRES 50 A 863 LYS GLN ALA GLU VAL SER SER VAL PRO ASP HIS LEU THR SEQRES 51 A 863 SER CYS VAL ARG PRO ASP VAL ARG VAL SER PRO SER PHE SEQRES 52 A 863 SER GLN ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SEQRES 53 A 863 SER TYR GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER SEQRES 54 A 863 PRO GLU ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET SEQRES 55 A 863 VAL PRO MET TYR PRO ALA PHE LYS ARG VAL TRP ASN TYR SEQRES 56 A 863 PHE GLN ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG SEQRES 57 A 863 ASN GLY VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR SEQRES 58 A 863 ASP TYR ASP GLY LEU HIS ASP THR GLU ASP LYS ILE LYS SEQRES 59 A 863 GLN TYR VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS SEQRES 60 A 863 TYR TYR SER ILE ILE THR SER CYS LEU ASP PHE THR GLN SEQRES 61 A 863 PRO ALA ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER SEQRES 62 A 863 PHE ILE LEU PRO HIS ARG PRO ASP ASN GLU GLU SER CYS SEQRES 63 A 863 ASN SER SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU SEQRES 64 A 863 MET LYS MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS SEQRES 65 A 863 LEU THR SER LEU ASP PHE PHE ARG LYS THR SER ARG SER SEQRES 66 A 863 TYR PRO GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR SEQRES 67 A 863 TYR GLU SER GLU ILE HET NAG A 901 14 HET ZN A 902 1 HET ZN A 903 1 HET CA A 904 1 HET 6Y7 A 905 32 HET PO4 A 906 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 6Y7 3-[6-CHLORANYL-2-CYCLOPROPYL-1-(1-ETHYLPYRAZOL-4-YL)-7- HETNAM 2 6Y7 FLUORANYL-INDOL-3-YL]SULFANYL-2-FLUORANYL-BENZOIC ACID HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CA CA 2+ FORMUL 6 6Y7 C23 H18 CL F2 N3 O2 S FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *5(H2 O) HELIX 1 AA1 ASP A 89 LEU A 95 1 7 HELIX 2 AA2 THR A 104 CYS A 108 5 5 HELIX 3 AA3 ASP A 123 GLY A 128 1 6 HELIX 4 AA4 ASN A 133 LYS A 139 1 7 HELIX 5 AA5 SER A 177 GLY A 182 1 6 HELIX 6 AA6 MET A 186 GLY A 196 1 11 HELIX 7 AA7 LYS A 209 GLY A 220 1 12 HELIX 8 AA8 TYR A 222 GLY A 227 1 6 HELIX 9 AA9 ARG A 247 TRP A 255 5 9 HELIX 10 AB1 PRO A 259 LYS A 266 1 8 HELIX 11 AB2 PRO A 281 LEU A 293 1 13 HELIX 12 AB3 ASP A 312 GLY A 319 1 8 HELIX 13 AB4 GLY A 322 GLU A 324 5 3 HELIX 14 AB5 MET A 325 GLN A 345 1 21 HELIX 15 AB6 SER A 374 TYR A 376 5 3 HELIX 16 AB7 ASN A 379 ASP A 381 5 3 HELIX 17 AB8 ASP A 404 LEU A 412 1 9 HELIX 18 AB9 GLN A 427 LEU A 429 5 3 HELIX 19 AC1 PRO A 430 HIS A 434 5 5 HELIX 20 AC2 VAL A 481 GLN A 485 5 5 HELIX 21 AC3 GLU A 508 LEU A 516 1 9 HELIX 22 AC4 LEU A 531 LEU A 535 5 5 HELIX 23 AC5 ASN A 666 ASP A 673 1 8 HELIX 24 AC6 PRO A 683 SER A 687 5 5 HELIX 25 AC7 SER A 689 TYR A 694 1 6 HELIX 26 AC8 ASP A 695 LEU A 698 5 4 HELIX 27 AC9 TYR A 706 VAL A 719 1 14 HELIX 28 AD1 VAL A 719 ARG A 728 1 10 HELIX 29 AD2 THR A 749 ILE A 753 5 5 HELIX 30 AD3 ASP A 811 LYS A 814 5 4 HELIX 31 AD4 TRP A 815 HIS A 823 1 9 HELIX 32 AD5 ARG A 826 SER A 835 1 10 HELIX 33 AD6 SER A 845 THR A 854 1 10 SHEET 1 AA1 6 VAL A 303 PRO A 311 0 SHEET 2 AA1 6 LEU A 166 ASP A 172 1 N ILE A 168 O PHE A 306 SHEET 3 AA1 6 ASN A 353 GLY A 358 1 O ILE A 355 N PHE A 169 SHEET 4 AA1 6 PHE A 488 TYR A 491 -1 O TYR A 491 N VAL A 354 SHEET 5 AA1 6 THR A 197 HIS A 198 -1 N THR A 197 O GLY A 490 SHEET 6 AA1 6 THR A 499 LYS A 500 1 O THR A 499 N HIS A 198 SHEET 1 AA2 2 MET A 202 ARG A 203 0 SHEET 2 AA2 2 PHE A 504 GLU A 505 1 O PHE A 504 N ARG A 203 SHEET 1 AA3 2 SER A 232 ASP A 235 0 SHEET 2 AA3 2 ALA A 240 HIS A 243 -1 O PHE A 242 N MET A 233 SHEET 1 AA4 2 GLU A 363 ASP A 364 0 SHEET 2 AA4 2 GLY A 473 ASP A 474 -1 O ASP A 474 N GLU A 363 SHEET 1 AA5 2 THR A 370 PHE A 372 0 SHEET 2 AA5 2 HIS A 453 ALA A 455 1 O ALA A 455 N GLU A 371 SHEET 1 AA6 4 ILE A 383 VAL A 386 0 SHEET 2 AA6 4 LEU A 390 SER A 395 -1 O ARG A 394 N THR A 384 SHEET 3 AA6 4 ILE A 444 VAL A 448 -1 O LEU A 446 N GLY A 391 SHEET 4 AA6 4 PHE A 421 LEU A 425 -1 N TYR A 424 O HIS A 445 SHEET 1 AA7 2 ALA A 603 VAL A 604 0 SHEET 2 AA7 2 LEU A 836 ASP A 837 -1 O ASP A 837 N ALA A 603 SHEET 1 AA8 6 TYR A 610 TYR A 614 0 SHEET 2 AA8 6 PHE A 618 SER A 623 -1 O SER A 620 N LEU A 613 SHEET 3 AA8 6 PRO A 629 VAL A 636 -1 O SER A 633 N GLU A 619 SHEET 4 AA8 6 VAL A 731 ILE A 738 -1 O VAL A 733 N TYR A 634 SHEET 5 AA8 6 HIS A 767 CYS A 775 -1 O TYR A 769 N GLY A 736 SHEET 6 AA8 6 LEU A 789 PRO A 797 -1 O SER A 790 N SER A 774 SHEET 1 AA9 2 SER A 677 PHE A 680 0 SHEET 2 AA9 2 MET A 702 MET A 705 -1 O VAL A 703 N GLY A 679 SSBOND 1 CYS A 59 CYS A 76 1555 1555 2.05 SSBOND 2 CYS A 63 CYS A 94 1555 1555 2.06 SSBOND 3 CYS A 74 CYS A 87 1555 1555 1.93 SSBOND 4 CYS A 80 CYS A 86 1555 1555 2.07 SSBOND 5 CYS A 103 CYS A 120 1555 1555 2.04 SSBOND 6 CYS A 108 CYS A 138 1555 1555 2.00 SSBOND 7 CYS A 118 CYS A 131 1555 1555 2.02 SSBOND 8 CYS A 124 CYS A 130 1555 1555 2.01 SSBOND 9 CYS A 149 CYS A 195 1555 1555 2.03 SSBOND 10 CYS A 157 CYS A 351 1555 1555 2.06 SSBOND 11 CYS A 414 CYS A 806 1555 1555 2.06 SSBOND 12 CYS A 775 CYS A 785 1555 1555 2.05 LINK OD1 ASP A 172 ZN ZN A 903 1555 1555 1.81 LINK OG1 THR A 210 ZN ZN A 903 1555 1555 1.75 LINK OD1 ASP A 312 ZN ZN A 902 1555 1555 2.29 LINK NE2 HIS A 316 ZN ZN A 902 1555 1555 2.18 LINK OD2 ASP A 359 ZN ZN A 903 1555 1555 2.17 LINK NE2 HIS A 360 ZN ZN A 903 1555 1555 2.13 LINK NE2 HIS A 475 ZN ZN A 902 1555 1555 2.33 LINK OD1 ASP A 740 CA CA A 904 1555 1555 2.44 LINK OD1 ASP A 742 CA CA A 904 1555 1555 2.61 LINK OD1 ASP A 744 CA CA A 904 1555 1555 2.66 LINK O LEU A 746 CA CA A 904 1555 1555 2.01 LINK OD1 ASP A 748 CA CA A 904 1555 1555 2.12 LINK ZN ZN A 902 O2 PO4 A 906 1555 1555 2.29 LINK ZN ZN A 902 O3 PO4 A 906 1555 1555 2.05 CISPEP 1 TYR A 206 PRO A 207 0 -2.49 CISPEP 2 GLN A 310 PRO A 311 0 2.52 CRYST1 55.100 55.506 70.075 71.56 79.75 81.09 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018149 -0.002847 -0.002553 0.00000 SCALE2 0.000000 0.018236 -0.005672 0.00000 SCALE3 0.000000 0.000000 0.015187 0.00000