HEADER TRANSFERASE 20-JUL-16 5KXH TITLE MOUSE POFUT1 IN COMPLEX WITH MOUSE FACTOR VII EGF1 AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR VII; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR; COMPND 11 EC: 3.4.21.21; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: F7, CF7; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE O-FUCOSYLATION GT-B INVERTING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 8 24-MAR-21 5KXH 1 SOURCE HETSYN REVDAT 7 29-JUL-20 5KXH 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 08-JAN-20 5KXH 1 REMARK REVDAT 5 27-SEP-17 5KXH 1 REMARK REVDAT 4 20-SEP-17 5KXH 1 REMARK REVDAT 3 28-JUN-17 5KXH 1 JRNL REVDAT 2 31-MAY-17 5KXH 1 JRNL REVDAT 1 17-MAY-17 5KXH 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 86104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0685 - 4.1317 1.00 3059 144 0.1522 0.1666 REMARK 3 2 4.1317 - 3.2797 1.00 2890 172 0.1387 0.1561 REMARK 3 3 3.2797 - 2.8652 1.00 2866 157 0.1420 0.1588 REMARK 3 4 2.8652 - 2.6033 1.00 2837 159 0.1414 0.1527 REMARK 3 5 2.6033 - 2.4167 1.00 2825 161 0.1325 0.1543 REMARK 3 6 2.4167 - 2.2742 1.00 2798 170 0.1328 0.1394 REMARK 3 7 2.2742 - 2.1603 1.00 2833 136 0.1368 0.1486 REMARK 3 8 2.1603 - 2.0663 1.00 2830 135 0.1327 0.1431 REMARK 3 9 2.0663 - 1.9867 1.00 2802 145 0.1382 0.1627 REMARK 3 10 1.9867 - 1.9182 1.00 2815 129 0.1439 0.1589 REMARK 3 11 1.9182 - 1.8582 0.99 2768 155 0.1437 0.1520 REMARK 3 12 1.8582 - 1.8051 0.99 2782 146 0.1516 0.1874 REMARK 3 13 1.8051 - 1.7576 0.99 2815 137 0.1537 0.1779 REMARK 3 14 1.7576 - 1.7147 0.99 2757 160 0.1561 0.1751 REMARK 3 15 1.7147 - 1.6757 0.99 2745 150 0.1498 0.1974 REMARK 3 16 1.6757 - 1.6400 0.99 2790 139 0.1529 0.1638 REMARK 3 17 1.6400 - 1.6072 0.99 2775 144 0.1520 0.1809 REMARK 3 18 1.6072 - 1.5769 0.99 2740 142 0.1531 0.1763 REMARK 3 19 1.5769 - 1.5487 0.99 2756 144 0.1535 0.1577 REMARK 3 20 1.5487 - 1.5225 0.99 2774 135 0.1571 0.2053 REMARK 3 21 1.5225 - 1.4979 0.99 2736 152 0.1679 0.1864 REMARK 3 22 1.4979 - 1.4749 0.99 2695 167 0.1768 0.1913 REMARK 3 23 1.4749 - 1.4532 0.98 2711 143 0.1901 0.2108 REMARK 3 24 1.4532 - 1.4327 0.98 2765 139 0.1916 0.2115 REMARK 3 25 1.4327 - 1.4133 0.98 2745 131 0.2054 0.2080 REMARK 3 26 1.4133 - 1.3950 0.98 2720 144 0.2140 0.2412 REMARK 3 27 1.3950 - 1.3775 0.96 2694 122 0.2326 0.2410 REMARK 3 28 1.3775 - 1.3609 0.91 2496 140 0.2521 0.2750 REMARK 3 29 1.3609 - 1.3451 0.81 2263 120 0.2869 0.3682 REMARK 3 30 1.3451 - 1.3300 0.62 1716 88 0.3347 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3304 REMARK 3 ANGLE : 0.901 4518 REMARK 3 CHIRALITY : 0.066 480 REMARK 3 PLANARITY : 0.006 580 REMARK 3 DIHEDRAL : 17.868 1226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2290 38.4244 23.9906 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0950 REMARK 3 T33: 0.1024 T12: 0.0009 REMARK 3 T13: -0.0016 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.7810 L22: 1.1841 REMARK 3 L33: 1.0268 L12: 0.3167 REMARK 3 L13: 0.2841 L23: 0.6840 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0766 S13: 0.0981 REMARK 3 S21: 0.0413 S22: -0.1317 S23: 0.1798 REMARK 3 S31: -0.0004 S32: -0.1284 S33: 0.1492 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8531 53.5274 19.4147 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.1427 REMARK 3 T33: 0.2462 T12: 0.0054 REMARK 3 T13: -0.0942 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.6816 L22: 1.0068 REMARK 3 L33: 0.8121 L12: 0.3894 REMARK 3 L13: 0.5061 L23: 0.7265 REMARK 3 S TENSOR REMARK 3 S11: -0.2509 S12: 0.0933 S13: 0.4543 REMARK 3 S21: -0.3065 S22: -0.0379 S23: 0.2378 REMARK 3 S31: -0.4587 S32: -0.0164 S33: 0.1300 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5336 33.1725 21.5293 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0869 REMARK 3 T33: 0.0590 T12: 0.0066 REMARK 3 T13: -0.0026 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.7726 L22: 1.9992 REMARK 3 L33: 1.1285 L12: 0.3149 REMARK 3 L13: 0.2043 L23: 0.9781 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.0277 S13: -0.0031 REMARK 3 S21: 0.0726 S22: -0.0157 S23: -0.0188 REMARK 3 S31: 0.0068 S32: 0.0013 S33: 0.0518 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2171 20.0920 4.2838 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.1081 REMARK 3 T33: 0.0608 T12: -0.0101 REMARK 3 T13: 0.0077 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.2235 L22: 1.4770 REMARK 3 L33: 2.0242 L12: -0.5953 REMARK 3 L13: 0.0443 L23: 0.7943 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: 0.2569 S13: -0.0323 REMARK 3 S21: -0.0994 S22: -0.0591 S23: 0.0131 REMARK 3 S31: -0.0600 S32: 0.0512 S33: 0.0530 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3250 46.2747 7.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.1228 REMARK 3 T33: 0.2014 T12: -0.0075 REMARK 3 T13: -0.0678 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 7.2873 L22: 6.8402 REMARK 3 L33: 4.1332 L12: -2.6724 REMARK 3 L13: 1.2899 L23: 4.0808 REMARK 3 S TENSOR REMARK 3 S11: -0.0427 S12: 0.2982 S13: 0.8493 REMARK 3 S21: -0.4040 S22: 0.0073 S23: -0.1463 REMARK 3 S31: -0.7333 S32: 0.1354 S33: 0.0233 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9342 43.2492 2.1464 REMARK 3 T TENSOR REMARK 3 T11: 0.3554 T22: 0.2672 REMARK 3 T33: 0.2785 T12: -0.0997 REMARK 3 T13: 0.0005 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 1.4407 L22: 1.1872 REMARK 3 L33: 3.7068 L12: -0.7427 REMARK 3 L13: 0.1555 L23: 1.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.2494 S12: -0.0882 S13: 0.7645 REMARK 3 S21: -0.0349 S22: -0.1367 S23: -0.5301 REMARK 3 S31: -1.3137 S32: 1.2177 S33: -0.1350 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7525 46.0800 -0.1974 REMARK 3 T TENSOR REMARK 3 T11: 0.5189 T22: 0.3201 REMARK 3 T33: 0.4118 T12: -0.1060 REMARK 3 T13: 0.0934 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 4.1991 L22: 1.7929 REMARK 3 L33: 4.8894 L12: -1.9494 REMARK 3 L13: 2.8025 L23: 0.0930 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: 0.9502 S13: 1.1458 REMARK 3 S21: -1.0677 S22: 0.0761 S23: -0.9346 REMARK 3 S31: -0.8834 S32: 0.9169 S33: 0.0085 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5227 41.7467 0.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.3708 T22: 0.1801 REMARK 3 T33: 0.2663 T12: 0.0420 REMARK 3 T13: -0.1397 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.6368 L22: 1.7221 REMARK 3 L33: 4.7107 L12: -1.7306 REMARK 3 L13: -0.6607 L23: -1.1977 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: 0.4786 S13: 0.4593 REMARK 3 S21: -0.6844 S22: -0.0956 S23: 0.5465 REMARK 3 S31: -0.4638 S32: -0.1624 S33: 0.1860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.328 REMARK 200 RESOLUTION RANGE LOW (A) : 47.039 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.02400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000 MME 50MM TRIS 8.5, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 259 REMARK 465 GLY A 260 REMARK 465 THR A 261 REMARK 465 ASP B 87 REMARK 465 GLY B 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLN A 203 CD OE1 NE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 GLN B 90 CG CD OE1 NE2 REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 955 O HOH B 235 1.97 REMARK 500 O HOH A 947 O HOH A 958 1.97 REMARK 500 O HOH A 822 O HOH A 838 1.98 REMARK 500 O HOH B 203 O HOH B 233 2.09 REMARK 500 O HOH A 776 O HOH A 847 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 940 O HOH A 947 3555 1.83 REMARK 500 O HOH A 856 O HOH A 861 3545 1.83 REMARK 500 O HOH A 522 O HOH A 822 3645 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 267 -126.40 50.73 REMARK 500 SER A 317 -105.21 -160.62 REMARK 500 MET A 383 88.14 -150.89 REMARK 500 LEU B 106 -111.41 49.38 REMARK 500 SER B 108 -142.63 -139.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 967 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 6.20 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KXH A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KXH B 87 126 UNP P70375 FA7_MOUSE 87 126 SEQADV 5KXH GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KXH ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KXH PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP GLY ASP GLN CYS ALA SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY THR CYS GLN ASP HIS LEU LYS SER TYR VAL CYS PHE SEQRES 3 B 40 CYS LEU LEU ASP PHE GLU GLY ARG ASN CYS GLU LYS SER SEQRES 4 B 40 LYS HET NAG A 401 28 HET NAG A 402 28 HET GDP A 403 38 HET GOL A 404 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *503(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 ARG A 138 1 6 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 249 5 3 HELIX 14 AB5 TRP A 250 MET A 256 1 7 HELIX 15 AB6 SER A 269 GLY A 274 1 6 HELIX 16 AB7 THR A 284 LEU A 289 1 6 HELIX 17 AB8 ASP A 291 ASN A 307 1 17 HELIX 18 AB9 TYR A 320 GLN A 326 1 7 HELIX 19 AC1 VAL A 341 GLN A 351 1 11 HELIX 20 AC2 SER A 361 HIS A 374 1 14 HELIX 21 AC3 GLN B 90 ASN B 94 5 5 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 SER A 336 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N ILE A 313 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 101 HIS B 105 0 SHEET 2 AA5 2 SER B 108 PHE B 112 -1 O SER B 108 N HIS B 105 SHEET 1 AA6 2 PHE B 117 GLU B 118 0 SHEET 2 AA6 2 LYS B 124 SER B 125 -1 O LYS B 124 N GLU B 118 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.04 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.03 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.03 SSBOND 5 CYS B 91 CYS B 102 1555 1555 2.03 SSBOND 6 CYS B 96 CYS B 111 1555 1555 2.03 SSBOND 7 CYS B 113 CYS B 122 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.43 CISPEP 1 PRO A 83 PRO A 84 0 6.23 CISPEP 2 ASN A 151 PRO A 152 0 9.53 CISPEP 3 PHE A 204 PRO A 205 0 -3.85 CISPEP 4 ARG A 237 PRO A 238 0 -2.39 CRYST1 51.970 66.540 110.640 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009038 0.00000