HEADER TRANSFERASE 20-JUL-16 5KY0 TITLE MOUSE POFUT1 IN COMPLEX WITH MOUSE NOTCH1 EGF12(D464G) AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NOTCH 1,MOTCH A,MT14,P300; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: NOTCH1, MOTCH; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 7 23-OCT-24 5KY0 1 HETSYN REVDAT 6 29-JUL-20 5KY0 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 08-JAN-20 5KY0 1 REMARK REVDAT 4 20-SEP-17 5KY0 1 REMARK REVDAT 3 28-JUN-17 5KY0 1 JRNL REVDAT 2 31-MAY-17 5KY0 1 JRNL REVDAT 1 17-MAY-17 5KY0 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1405 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1303 - 4.2203 1.00 2852 133 0.1475 0.1557 REMARK 3 2 4.2203 - 3.3501 1.00 2723 166 0.1283 0.1295 REMARK 3 3 3.3501 - 2.9267 1.00 2684 140 0.1432 0.1816 REMARK 3 4 2.9267 - 2.6591 1.00 2654 157 0.1396 0.1734 REMARK 3 5 2.6591 - 2.4685 1.00 2658 148 0.1372 0.1712 REMARK 3 6 2.4685 - 2.3230 1.00 2659 157 0.1335 0.1507 REMARK 3 7 2.3230 - 2.2067 1.00 2622 144 0.1321 0.1565 REMARK 3 8 2.2067 - 2.1106 1.00 2665 115 0.1360 0.1546 REMARK 3 9 2.1106 - 2.0293 1.00 2657 141 0.1367 0.1538 REMARK 3 10 2.0293 - 1.9593 1.00 2623 126 0.1404 0.1542 REMARK 3 11 1.9593 - 1.8981 1.00 2636 126 0.1450 0.1668 REMARK 3 12 1.8981 - 1.8438 1.00 2619 150 0.1456 0.1633 REMARK 3 13 1.8438 - 1.7953 1.00 2627 138 0.1488 0.1975 REMARK 3 14 1.7953 - 1.7515 1.00 2643 126 0.1519 0.1794 REMARK 3 15 1.7515 - 1.7116 1.00 2625 145 0.1615 0.1919 REMARK 3 16 1.7116 - 1.6752 1.00 2597 148 0.1643 0.2090 REMARK 3 17 1.6752 - 1.6417 1.00 2615 137 0.1690 0.2162 REMARK 3 18 1.6417 - 1.6107 1.00 2630 128 0.1830 0.2256 REMARK 3 19 1.6107 - 1.5819 1.00 2577 142 0.1806 0.1975 REMARK 3 20 1.5819 - 1.5551 1.00 2649 127 0.1993 0.2165 REMARK 3 21 1.5551 - 1.5300 0.97 2507 137 0.2313 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3447 REMARK 3 ANGLE : 1.392 4709 REMARK 3 CHIRALITY : 0.078 500 REMARK 3 PLANARITY : 0.008 607 REMARK 3 DIHEDRAL : 15.782 1303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1177 40.1860 20.1299 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1388 REMARK 3 T33: 0.1545 T12: 0.0088 REMARK 3 T13: -0.0210 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.7073 L22: 1.4350 REMARK 3 L33: 1.5321 L12: 0.0545 REMARK 3 L13: 0.1228 L23: 1.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0104 S13: 0.1220 REMARK 3 S21: -0.1101 S22: -0.1315 S23: 0.1793 REMARK 3 S31: -0.1923 S32: -0.0952 S33: 0.1466 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5640 34.4646 -2.1690 REMARK 3 T TENSOR REMARK 3 T11: 0.7343 T22: 0.6167 REMARK 3 T33: 0.6077 T12: -0.0719 REMARK 3 T13: -0.0273 T23: 0.1675 REMARK 3 L TENSOR REMARK 3 L11: 3.4249 L22: 1.1756 REMARK 3 L33: 1.4333 L12: -0.9857 REMARK 3 L13: 2.1121 L23: -0.2737 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: 1.0776 S13: 0.8428 REMARK 3 S21: -0.8592 S22: 0.0108 S23: -0.0182 REMARK 3 S31: -0.6625 S32: 0.4620 S33: 0.1215 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2916 17.6628 4.6155 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1815 REMARK 3 T33: 0.1447 T12: 0.0090 REMARK 3 T13: 0.0144 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.8031 L22: 1.3963 REMARK 3 L33: 2.4568 L12: -0.5719 REMARK 3 L13: -0.2388 L23: 0.7584 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.2862 S13: -0.1536 REMARK 3 S21: -0.0715 S22: -0.0855 S23: 0.0448 REMARK 3 S31: 0.0770 S32: 0.0534 S33: 0.1138 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 454 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5178 49.2083 7.4716 REMARK 3 T TENSOR REMARK 3 T11: 0.6210 T22: 0.5476 REMARK 3 T33: 0.6095 T12: -0.1292 REMARK 3 T13: -0.0126 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.0379 L22: 3.3113 REMARK 3 L33: 3.2880 L12: 0.1085 REMARK 3 L13: 2.5651 L23: -0.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.5683 S13: 0.6874 REMARK 3 S21: -0.4722 S22: -0.0307 S23: -0.8543 REMARK 3 S31: -0.4978 S32: 0.8742 S33: -0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 459 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8484 44.5082 3.0779 REMARK 3 T TENSOR REMARK 3 T11: 0.5009 T22: 0.3468 REMARK 3 T33: 0.3953 T12: -0.0118 REMARK 3 T13: -0.0292 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 3.4675 L22: 3.2753 REMARK 3 L33: 2.4997 L12: -1.9052 REMARK 3 L13: 0.8157 L23: 1.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.2367 S13: 0.6492 REMARK 3 S21: -0.5916 S22: 0.0620 S23: -0.4374 REMARK 3 S31: -0.7990 S32: 0.3188 S33: -0.0175 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1825 42.3022 0.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.6945 T22: 0.4553 REMARK 3 T33: 0.4485 T12: 0.1563 REMARK 3 T13: -0.2715 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 0.9309 L22: 4.5600 REMARK 3 L33: 1.4498 L12: -0.1517 REMARK 3 L13: -1.0589 L23: -0.6458 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.4978 S13: 0.2935 REMARK 3 S21: -0.3995 S22: -0.1935 S23: 0.3627 REMARK 3 S31: -0.3947 S32: -0.4752 S33: 0.2099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 2000 MME 50MM TRIS PH8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.13850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.13850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 LYS A 258 REMARK 465 ASP A 259 REMARK 465 GLY A 260 REMARK 465 THR A 261 REMARK 465 ALA A 262 REMARK 465 ASP B 452 REMARK 465 VAL B 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 ILE B 471 CG1 CG2 CD1 REMARK 470 GLU B 473 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 138 OG SER B 458 1.15 REMARK 500 HE22 GLN B 470 OE1 GLN B 475 1.46 REMARK 500 HG SER A 336 O HOH A 506 1.51 REMARK 500 NE2 GLN B 470 OE1 GLN B 475 1.88 REMARK 500 O HOH A 537 O HOH A 545 1.97 REMARK 500 NH1 ARG A 138 OG SER B 458 1.98 REMARK 500 O HOH A 511 O HOH A 699 2.12 REMARK 500 O HOH A 661 O HOH A 795 2.15 REMARK 500 OH TYR A 275 O HOH A 501 2.17 REMARK 500 O HOH A 779 O HOH A 862 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 246 12.58 -140.79 REMARK 500 PHE A 266 102.59 -162.76 REMARK 500 MET A 267 -126.90 62.68 REMARK 500 SER A 317 -106.82 -156.99 REMARK 500 LYS A 329 -125.04 63.95 REMARK 500 MET A 383 82.65 -154.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 953 DISTANCE = 6.11 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KHX RELATED DB: PDB REMARK 900 RELATED ID: 5KHQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY0 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY0 B 452 491 UNP Q01705 NOTC1_MOUSE 452 491 SEQADV 5KY0 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY0 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY0 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY0 GLY B 464 UNP Q01705 ASP 464 ENGINEERED MUTATION SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP VAL ASN GLU CYS ILE SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 ALA THR CYS LEU ASP GLN ILE GLY GLU PHE GLN CYS ILE SEQRES 3 B 40 CYS MET PRO GLY TYR GLU GLY VAL TYR CYS GLU ILE ASN SEQRES 4 B 40 THR HET NAG A 401 28 HET NAG A 402 28 HET GDP A 403 38 HET GOL A 404 14 HET GOL A 405 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *479(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 GLN A 137 1 5 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ALA A 255 1 9 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 GLU B 455 ASN B 459 5 5 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N ILE A 313 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N GLY A 357 SHEET 1 AA5 2 THR B 466 ASP B 469 0 SHEET 2 AA5 2 PHE B 474 ILE B 477 -1 O ILE B 477 N THR B 466 SHEET 1 AA6 2 TYR B 482 GLU B 483 0 SHEET 2 AA6 2 ILE B 489 ASN B 490 -1 O ILE B 489 N GLU B 483 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.02 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.05 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.05 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.05 SSBOND 5 CYS B 456 CYS B 467 1555 1555 2.04 SSBOND 6 CYS B 461 CYS B 476 1555 1555 2.04 SSBOND 7 CYS B 478 CYS B 487 1555 1555 2.05 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.44 CISPEP 1 PRO A 83 PRO A 84 0 6.13 CISPEP 2 ASN A 151 PRO A 152 0 13.30 CISPEP 3 PHE A 204 PRO A 205 0 -4.30 CISPEP 4 ARG A 237 PRO A 238 0 -2.37 CRYST1 52.101 66.476 110.277 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009068 0.00000