HEADER TRANSFERASE 21-JUL-16 5KY3 TITLE MOUSE POFUT1 IN COMPLEX WITH MOUSE FACTOR VII EGF1 MUTANT (T101A) AND TITLE 2 GDP-FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR VII; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR; COMPND 11 EC: 3.4.21.21; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: F7, CF7; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 29-JUL-20 5KY3 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-JUN-17 5KY3 1 JRNL REVDAT 2 31-MAY-17 5KY3 1 JRNL REVDAT 1 17-MAY-17 5KY3 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 58040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1497 - 4.2202 0.99 2866 135 0.1466 0.1402 REMARK 3 2 4.2202 - 3.3500 1.00 2729 166 0.1322 0.1423 REMARK 3 3 3.3500 - 2.9266 1.00 2696 142 0.1461 0.1590 REMARK 3 4 2.9266 - 2.6590 1.00 2673 153 0.1460 0.1652 REMARK 3 5 2.6590 - 2.4685 1.00 2669 157 0.1381 0.1775 REMARK 3 6 2.4685 - 2.3229 1.00 2673 152 0.1361 0.1398 REMARK 3 7 2.3229 - 2.2066 1.00 2639 144 0.1405 0.1469 REMARK 3 8 2.2066 - 2.1105 1.00 2679 113 0.1397 0.1750 REMARK 3 9 2.1105 - 2.0293 1.00 2648 146 0.1435 0.1734 REMARK 3 10 2.0293 - 1.9593 1.00 2671 124 0.1475 0.1735 REMARK 3 11 1.9593 - 1.8980 1.00 2656 132 0.1527 0.2037 REMARK 3 12 1.8980 - 1.8437 1.00 2595 152 0.1549 0.1719 REMARK 3 13 1.8437 - 1.7952 1.00 2656 134 0.1540 0.1937 REMARK 3 14 1.7952 - 1.7514 1.00 2656 124 0.1552 0.1731 REMARK 3 15 1.7514 - 1.7116 1.00 2633 144 0.1648 0.1844 REMARK 3 16 1.7116 - 1.6752 1.00 2579 152 0.1672 0.2105 REMARK 3 17 1.6752 - 1.6417 1.00 2662 133 0.1842 0.2080 REMARK 3 18 1.6417 - 1.6107 0.99 2618 131 0.1938 0.2108 REMARK 3 19 1.6107 - 1.5819 0.97 2514 144 0.2021 0.2200 REMARK 3 20 1.5819 - 1.5551 0.92 2460 112 0.2185 0.2578 REMARK 3 21 1.5551 - 1.5300 0.83 2154 124 0.2494 0.2966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3313 REMARK 3 ANGLE : 1.117 4545 REMARK 3 CHIRALITY : 0.058 486 REMARK 3 PLANARITY : 0.007 580 REMARK 3 DIHEDRAL : 12.659 1976 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2855 38.4833 24.0996 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1383 REMARK 3 T33: 0.1448 T12: -0.0033 REMARK 3 T13: 0.0023 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.1564 L22: 1.4463 REMARK 3 L33: 1.1323 L12: 0.1395 REMARK 3 L13: 0.2084 L23: 0.7639 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.0399 S13: 0.0614 REMARK 3 S21: 0.0125 S22: -0.1491 S23: 0.1738 REMARK 3 S31: 0.0239 S32: -0.1270 S33: 0.1360 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9781 53.7329 19.1533 REMARK 3 T TENSOR REMARK 3 T11: 0.3052 T22: 0.1582 REMARK 3 T33: 0.2360 T12: 0.0201 REMARK 3 T13: -0.0606 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.7193 L22: 1.8759 REMARK 3 L33: 1.0602 L12: 0.4521 REMARK 3 L13: 0.5171 L23: 0.7939 REMARK 3 S TENSOR REMARK 3 S11: -0.1634 S12: 0.1104 S13: 0.5325 REMARK 3 S21: -0.3537 S22: -0.0781 S23: 0.2305 REMARK 3 S31: -0.4362 S32: -0.0430 S33: 0.1555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8704 29.9793 15.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.1393 REMARK 3 T33: 0.1191 T12: 0.0056 REMARK 3 T13: -0.0010 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.7668 L22: 1.8846 REMARK 3 L33: 1.4605 L12: -0.1920 REMARK 3 L13: -0.1732 L23: 1.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.0802 S13: -0.0378 REMARK 3 S21: -0.0493 S22: -0.0607 S23: 0.0216 REMARK 3 S31: -0.0248 S32: -0.0629 S33: 0.0695 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8034 19.9927 4.5101 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1703 REMARK 3 T33: 0.1339 T12: -0.0016 REMARK 3 T13: 0.0058 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.3269 L22: 1.5158 REMARK 3 L33: 2.4847 L12: -0.7204 REMARK 3 L13: -0.2311 L23: 0.9745 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.3754 S13: -0.1404 REMARK 3 S21: -0.1191 S22: -0.0962 S23: 0.0052 REMARK 3 S31: -0.0790 S32: 0.0408 S33: 0.0602 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2655 45.3570 3.3756 REMARK 3 T TENSOR REMARK 3 T11: 0.5876 T22: 0.4181 REMARK 3 T33: 0.5423 T12: -0.0435 REMARK 3 T13: 0.0457 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0775 L22: 5.5761 REMARK 3 L33: 5.9908 L12: 0.4907 REMARK 3 L13: -2.8448 L23: -2.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.6212 S13: 0.6911 REMARK 3 S21: -0.7594 S22: 0.0455 S23: -0.6565 REMARK 3 S31: -0.6678 S32: 0.4401 S33: 0.0423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4943 42.0135 -0.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.8178 T22: 0.4332 REMARK 3 T33: 0.4699 T12: -0.0600 REMARK 3 T13: -0.1589 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.7356 L22: 6.0281 REMARK 3 L33: 6.2389 L12: 4.8878 REMARK 3 L13: 1.1290 L23: 2.7470 REMARK 3 S TENSOR REMARK 3 S11: -1.0510 S12: 1.1212 S13: 0.5929 REMARK 3 S21: -1.7322 S22: 0.5504 S23: 0.8174 REMARK 3 S31: -0.1442 S32: -0.1367 S33: 0.3641 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.526 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.03050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.03050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.43450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ASP B 87 REMARK 465 GLY B 88 REMARK 465 ASP B 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 31 N CA CB REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 166 CE NZ REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 MET A 256 CG SD CE REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 THR A 261 OG1 CG2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 SER A 278 OG REMARK 470 THR A 279 OG1 CG2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 90 CG CD OE1 NE2 REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 817 O HOH A 826 2.03 REMARK 500 O HOH A 713 O HOH A 818 2.09 REMARK 500 O HOH A 831 O HOH A 836 2.09 REMARK 500 O HOH A 513 O HOH A 575 2.10 REMARK 500 O HOH A 802 O HOH A 804 2.16 REMARK 500 O HOH A 654 O HOH A 849 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 267 -128.78 58.10 REMARK 500 SER A 317 -108.50 -159.90 REMARK 500 ASP A 330 -9.51 94.50 REMARK 500 MET A 383 86.65 -152.47 REMARK 500 LEU B 106 -137.38 59.34 REMARK 500 SER B 108 -142.12 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 890 DISTANCE = 5.97 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KHX RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY3 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY3 B 87 126 UNP P70375 FA7_MOUSE 87 126 SEQADV 5KY3 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY3 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY3 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY3 ALA B 101 UNP P70375 THR 101 ENGINEERED MUTATION SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP GLY ASP GLN CYS ALA SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY ALA CYS GLN ASP HIS LEU LYS SER TYR VAL CYS PHE SEQRES 3 B 40 CYS LEU LEU ASP PHE GLU GLY ARG ASN CYS GLU LYS SER SEQRES 4 B 40 LYS HET NAG A 401 14 HET NAG A 402 14 HET GOL A 403 6 HET GFB A 404 66 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM GFB GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 GOL C3 H8 O3 FORMUL 6 GFB C16 H25 N5 O15 P2 FORMUL 7 HOH *407(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 GLN A 137 1 5 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 GLY A 260 1 14 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 GLN B 90 ASN B 94 5 5 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 ALA B 101 GLN B 103 0 SHEET 2 AA5 2 VAL B 110 PHE B 112 -1 O PHE B 112 N ALA B 101 SHEET 1 AA6 2 PHE B 117 GLU B 118 0 SHEET 2 AA6 2 LYS B 124 SER B 125 -1 O LYS B 124 N GLU B 118 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.00 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.06 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.05 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.04 SSBOND 5 CYS B 91 CYS B 102 1555 1555 2.04 SSBOND 6 CYS B 96 CYS B 111 1555 1555 2.04 SSBOND 7 CYS B 113 CYS B 122 1555 1555 2.05 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG A 402 1555 1555 1.43 CISPEP 1 PRO A 83 PRO A 84 0 5.34 CISPEP 2 ASN A 151 PRO A 152 0 13.19 CISPEP 3 PHE A 204 PRO A 205 0 -2.73 CISPEP 4 ARG A 237 PRO A 238 0 -4.25 CRYST1 52.150 66.869 110.061 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009086 0.00000