HEADER TRANSFERASE 21-JUL-16 5KY9 TITLE MOUSE POFUT1 IN COMPLEX WITH MOUSE NOTCH1 EGF12 MUTANT (D464G/A465G) TITLE 2 AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NOTCH 1,MOTCH A,MT14,P300; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: NOTCH1, MOTCH; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 5 06-NOV-24 5KY9 1 HETSYN REVDAT 4 29-JUL-20 5KY9 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-JUN-17 5KY9 1 JRNL REVDAT 2 31-MAY-17 5KY9 1 JRNL REVDAT 1 17-MAY-17 5KY9 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0980 - 4.1888 1.00 2928 138 0.1682 0.1966 REMARK 3 2 4.1888 - 3.3250 1.00 2747 166 0.1671 0.1810 REMARK 3 3 3.3250 - 2.9048 1.00 2739 147 0.1883 0.2083 REMARK 3 4 2.9048 - 2.6392 1.00 2728 155 0.2054 0.2169 REMARK 3 5 2.6392 - 2.4501 1.00 2710 159 0.2077 0.2593 REMARK 3 6 2.4501 - 2.3056 1.00 2693 154 0.2040 0.2369 REMARK 3 7 2.3056 - 2.1901 1.00 2719 139 0.2141 0.2458 REMARK 3 8 2.1901 - 2.0948 1.00 2699 121 0.2181 0.2256 REMARK 3 9 2.0948 - 2.0142 1.00 2669 141 0.2346 0.2251 REMARK 3 10 2.0142 - 1.9447 1.00 2717 135 0.2437 0.2537 REMARK 3 11 1.9447 - 1.8839 1.00 2693 128 0.2743 0.3313 REMARK 3 12 1.8839 - 1.8300 1.00 2687 153 0.3156 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3110 REMARK 3 ANGLE : 0.959 4253 REMARK 3 CHIRALITY : 0.053 458 REMARK 3 PLANARITY : 0.008 544 REMARK 3 DIHEDRAL : 12.958 1823 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9661 41.7595 21.6610 REMARK 3 T TENSOR REMARK 3 T11: 0.4363 T22: 0.3949 REMARK 3 T33: 0.4698 T12: 0.0335 REMARK 3 T13: -0.0394 T23: -0.1415 REMARK 3 L TENSOR REMARK 3 L11: 0.8509 L22: 2.7255 REMARK 3 L33: 2.1651 L12: 0.1608 REMARK 3 L13: 0.3535 L23: 1.6357 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.2503 S13: 0.2950 REMARK 3 S21: -0.0735 S22: -0.3275 S23: 0.3572 REMARK 3 S31: -0.3268 S32: -0.2678 S33: 0.2977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6111 23.2357 1.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: 0.3662 REMARK 3 T33: 0.2934 T12: 0.0440 REMARK 3 T13: -0.0688 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.7639 L22: 1.2207 REMARK 3 L33: 4.4745 L12: 0.4522 REMARK 3 L13: -1.7215 L23: 0.9773 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 0.6367 S13: -0.1475 REMARK 3 S21: -0.0378 S22: -0.0653 S23: 0.4527 REMARK 3 S31: -0.3475 S32: -0.7446 S33: -0.0203 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7950 31.7377 -1.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.4998 T22: 0.5129 REMARK 3 T33: 0.3734 T12: -0.0294 REMARK 3 T13: 0.0099 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.9436 L22: 2.6977 REMARK 3 L33: 2.3096 L12: -0.3966 REMARK 3 L13: 0.0610 L23: -2.0897 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.6078 S13: 0.7099 REMARK 3 S21: -0.5113 S22: -0.1402 S23: 0.0354 REMARK 3 S31: -0.8384 S32: 0.3274 S33: -0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9764 16.2988 6.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.3016 REMARK 3 T33: 0.2943 T12: -0.0060 REMARK 3 T13: 0.0427 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 3.7342 L22: 3.1522 REMARK 3 L33: 4.7127 L12: 0.5264 REMARK 3 L13: -0.7506 L23: 1.9501 REMARK 3 S TENSOR REMARK 3 S11: -0.1609 S12: 0.3587 S13: -0.4421 REMARK 3 S21: 0.1608 S22: -0.1707 S23: 0.1453 REMARK 3 S31: 0.3214 S32: -0.1845 S33: 0.2977 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 455 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0853 44.6656 4.2834 REMARK 3 T TENSOR REMARK 3 T11: 0.9502 T22: 0.4038 REMARK 3 T33: 0.7800 T12: 0.1094 REMARK 3 T13: -0.0401 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.9850 L22: 3.8024 REMARK 3 L33: 5.3337 L12: 1.5262 REMARK 3 L13: -3.0009 L23: -2.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.6639 S12: 0.2378 S13: 1.8071 REMARK 3 S21: -0.5838 S22: -0.5908 S23: 0.1949 REMARK 3 S31: -1.6860 S32: -0.1898 S33: -0.3016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1757 41.7577 0.4496 REMARK 3 T TENSOR REMARK 3 T11: 0.9464 T22: 0.9515 REMARK 3 T33: 0.7489 T12: 0.2566 REMARK 3 T13: -0.3983 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 2.9249 L22: 3.2560 REMARK 3 L33: 4.4743 L12: 1.0698 REMARK 3 L13: -3.6042 L23: -1.6219 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 1.8713 S13: 0.7157 REMARK 3 S21: -0.4718 S22: -0.4677 S23: 0.8028 REMARK 3 S31: -0.6382 S32: -0.6057 S33: 0.0558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 ARG A 277 REMARK 465 SER A 278 REMARK 465 THR A 279 REMARK 465 ASP B 452 REMARK 465 VAL B 453 REMARK 465 ASN B 454 REMARK 465 ILE B 471 REMARK 465 GLY B 472 REMARK 465 GLU B 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 32 CG CD REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 ASN A 252 CG OD1 ND2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 455 CG CD OE1 OE2 REMARK 470 ASN B 459 CG OD1 ND2 REMARK 470 ASP B 469 CG OD1 OD2 REMARK 470 GLN B 470 CG CD OE1 NE2 REMARK 470 GLN B 475 CG CD OE1 NE2 REMARK 470 GLU B 483 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 112 HD22 ASN A 116 1.58 REMARK 500 O HOH A 579 O HOH A 642 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 142 10.13 52.31 REMARK 500 ILE A 246 13.24 -140.63 REMARK 500 PHE A 266 102.16 -161.75 REMARK 500 MET A 267 -126.39 61.23 REMARK 500 SER A 317 -107.41 -156.51 REMARK 500 LYS A 329 -125.04 63.57 REMARK 500 MET A 383 82.81 -154.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXH RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY8 RELATED DB: PDB DBREF 5KY9 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY9 B 452 491 UNP Q01705 NOTC1_MOUSE 452 491 SEQADV 5KY9 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY9 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY9 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY9 GLY B 464 UNP Q01705 ASP 464 ENGINEERED MUTATION SEQADV 5KY9 GLY B 465 UNP Q01705 ALA 465 ENGINEERED MUTATION SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP VAL ASN GLU CYS ILE SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 GLY THR CYS LEU ASP GLN ILE GLY GLU PHE GLN CYS ILE SEQRES 3 B 40 CYS MET PRO GLY TYR GLU GLY VAL TYR CYS GLU ILE ASN SEQRES 4 B 40 THR HET NAG A 401 28 HET GDP A 402 38 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 HOH *152(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 GLN A 137 1 5 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 GLY A 260 1 14 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 GLU B 455 ASN B 459 5 5 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N VAL A 72 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O THR A 69 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 VAL A 335 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 466 LEU B 468 0 SHEET 2 AA5 2 GLN B 475 ILE B 477 -1 O ILE B 477 N THR B 466 SHEET 1 AA6 2 TYR B 482 GLU B 483 0 SHEET 2 AA6 2 ILE B 489 ASN B 490 -1 O ILE B 489 N GLU B 483 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.02 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.02 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.05 SSBOND 5 CYS B 456 CYS B 467 1555 1555 2.03 SSBOND 6 CYS B 461 CYS B 476 1555 1555 2.04 SSBOND 7 CYS B 478 CYS B 487 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.45 CISPEP 1 PRO A 83 PRO A 84 0 6.03 CISPEP 2 ASN A 151 PRO A 152 0 12.96 CISPEP 3 PHE A 204 PRO A 205 0 -3.97 CISPEP 4 ARG A 237 PRO A 238 0 -2.79 CRYST1 52.100 66.520 109.960 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009094 0.00000