HEADER SIGNALING PROTEIN 25-JUL-16 5KZV TITLE CRYSTAL STRUCTURE OF THE XENOPUS SMOOTHENED CYSTEINE-RICH DOMAIN (CRD) TITLE 2 IN COMPLEX WITH 20(S)-HYDROXYCHOLESTEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMOOTHENED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-154; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: SMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEDGEHOG SIGNALING, GPCR, CYSTEINE-RICH DOMAIN, STEROL, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HUANG,Y.KIM,A.SALIC REVDAT 5 04-OCT-23 5KZV 1 REMARK REVDAT 4 25-DEC-19 5KZV 1 REMARK REVDAT 3 06-SEP-17 5KZV 1 REMARK REVDAT 2 07-SEP-16 5KZV 1 JRNL REVDAT 1 17-AUG-16 5KZV 0 JRNL AUTH P.HUANG,D.NEDELCU,M.WATANABE,C.JAO,Y.KIM,J.LIU,A.SALIC JRNL TITL CELLULAR CHOLESTEROL DIRECTLY ACTIVATES SMOOTHENED IN JRNL TITL 2 HEDGEHOG SIGNALING. JRNL REF CELL V. 166 1176 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27545348 JRNL DOI 10.1016/J.CELL.2016.08.003 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 13688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5113 - 2.7631 0.98 3106 147 0.1688 0.1880 REMARK 3 2 2.7631 - 2.1933 1.00 3052 156 0.1780 0.2187 REMARK 3 3 2.1933 - 1.9161 0.98 2982 164 0.1697 0.2175 REMARK 3 4 1.9161 - 1.7409 0.80 2399 133 0.1845 0.2292 REMARK 3 5 1.7409 - 1.6161 0.48 1470 79 0.2026 0.2260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 962 REMARK 3 ANGLE : 1.307 1310 REMARK 3 CHIRALITY : 0.053 151 REMARK 3 PLANARITY : 0.006 161 REMARK 3 DIHEDRAL : 13.577 372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7700 3.1887 50.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.2874 REMARK 3 T33: 0.1468 T12: 0.0278 REMARK 3 T13: -0.0019 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.5514 L22: 1.3452 REMARK 3 L33: 0.7606 L12: 0.4523 REMARK 3 L13: 0.6427 L23: 0.6283 REMARK 3 S TENSOR REMARK 3 S11: -0.2018 S12: -0.4993 S13: 0.0738 REMARK 3 S21: 0.0492 S22: -0.0647 S23: 0.1121 REMARK 3 S31: -0.0491 S32: -0.0649 S33: -0.0543 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7261 0.1520 36.7052 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0652 REMARK 3 T33: 0.0452 T12: -0.0028 REMARK 3 T13: 0.0055 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2697 L22: 0.6017 REMARK 3 L33: 0.5187 L12: 0.0887 REMARK 3 L13: 0.0630 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.0321 S13: -0.0140 REMARK 3 S21: -0.0241 S22: -0.0055 S23: 0.1752 REMARK 3 S31: 0.0068 S32: -0.0803 S33: -0.0135 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8825 -1.1823 38.9392 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0815 REMARK 3 T33: 0.0508 T12: -0.0010 REMARK 3 T13: -0.0114 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.9281 L22: 0.4136 REMARK 3 L33: 0.7679 L12: 0.1657 REMARK 3 L13: -0.8386 L23: -0.2021 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.0267 S13: -0.0353 REMARK 3 S21: 0.1081 S22: 0.0120 S23: -0.1248 REMARK 3 S31: 0.1615 S32: 0.1043 S33: -0.2675 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4490 -0.5519 50.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1582 REMARK 3 T33: 0.0546 T12: 0.0262 REMARK 3 T13: 0.0131 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.4210 L22: 0.5670 REMARK 3 L33: 2.0175 L12: -0.3884 REMARK 3 L13: -1.4614 L23: 0.6352 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: -0.0617 S13: -0.1343 REMARK 3 S21: -0.0035 S22: -0.0357 S23: 0.0873 REMARK 3 S31: 0.1551 S32: -0.3763 S33: -0.6945 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6555 6.0842 41.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1167 REMARK 3 T33: 0.1175 T12: 0.0045 REMARK 3 T13: -0.0275 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0607 L22: 0.2197 REMARK 3 L33: 0.1693 L12: -0.0097 REMARK 3 L13: -0.1008 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.0353 S13: 0.0581 REMARK 3 S21: 0.0009 S22: -0.0478 S23: -0.1878 REMARK 3 S31: 0.0249 S32: -0.0336 S33: -0.0142 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2556 11.8479 40.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.0978 REMARK 3 T33: 0.1261 T12: 0.0154 REMARK 3 T13: -0.0282 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.1428 L22: 0.0793 REMARK 3 L33: 0.0643 L12: -0.0076 REMARK 3 L13: 0.0834 L23: -0.0301 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: 0.0714 S13: 0.1549 REMARK 3 S21: -0.0705 S22: -0.1069 S23: 0.0840 REMARK 3 S31: 0.0203 S32: -0.0603 S33: -0.0140 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9575 7.5519 52.9425 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2339 REMARK 3 T33: 0.0197 T12: 0.0553 REMARK 3 T13: -0.0627 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.8888 L22: 0.7764 REMARK 3 L33: 0.0865 L12: 0.4733 REMARK 3 L13: -0.1808 L23: -0.1069 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.3023 S13: -0.0658 REMARK 3 S21: 0.1868 S22: -0.0856 S23: -0.0636 REMARK 3 S31: -0.0095 S32: 0.1120 S33: 0.2248 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M POTASSIUM BROMIDE AND 30% PEG REMARK 280 MME 2000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.62400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.62400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 28 REMARK 465 MET A 29 REMARK 465 ALA A 30 REMARK 465 ASP A 31 REMARK 465 ILE A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 ASN A 153 REMARK 465 GLU A 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 584 O HOH A 636 1.64 REMARK 500 O HOH A 599 O HOH A 638 1.75 REMARK 500 O HOH A 533 O HOH A 651 1.75 REMARK 500 O HOH A 544 O HOH A 627 1.75 REMARK 500 O HOH A 595 O HOH A 693 1.96 REMARK 500 O HOH A 696 O HOH A 699 1.99 REMARK 500 O HOH A 573 O HOH A 616 2.00 REMARK 500 O HOH A 687 O HOH A 699 2.04 REMARK 500 O HOH A 679 O HOH A 706 2.06 REMARK 500 O HOH A 559 O HOH A 661 2.07 REMARK 500 O HOH A 685 O HOH A 707 2.08 REMARK 500 O HOH A 641 O HOH A 671 2.09 REMARK 500 O HOH A 691 O HOH A 709 2.10 REMARK 500 O HOH A 518 O HOH A 641 2.11 REMARK 500 O HOH A 663 O HOH A 673 2.11 REMARK 500 O HOH A 685 O HOH A 686 2.13 REMARK 500 O HOH A 571 O HOH A 573 2.15 REMARK 500 O SER A 69 O HOH A 501 2.15 REMARK 500 O HOH A 509 O HOH A 566 2.18 REMARK 500 O HOH A 599 O HOH A 611 2.19 REMARK 500 O HOH A 503 O HOH A 665 2.19 REMARK 500 O HOH A 537 O HOH A 658 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 514 O HOH A 642 4556 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 57 48.42 -81.47 REMARK 500 ARG A 134 -40.87 -159.75 REMARK 500 CYS A 142 43.36 -82.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 721 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 722 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 723 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 10.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCD A 400 DBREF 5KZV A 35 154 UNP Q98SW5 Q98SW5_XENLA 35 154 SEQADV 5KZV ALA A 28 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV MET A 29 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV ALA A 30 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV ASP A 31 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV ILE A 32 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV GLY A 33 UNP Q98SW5 EXPRESSION TAG SEQADV 5KZV SER A 34 UNP Q98SW5 EXPRESSION TAG SEQRES 1 A 127 ALA MET ALA ASP ILE GLY SER ASP LYS CYS LYS LYS THR SEQRES 2 A 127 THR THR CYS GLU PRO LEU LYS TYR ASN ILE CYS LEU GLY SEQRES 3 A 127 SER VAL LEU PRO TYR ALA LEU THR SER THR VAL LEU ALA SEQRES 4 A 127 GLU ASP SER SER SER GLN ASP GLU VAL HIS ASP LYS LEU SEQRES 5 A 127 SER LEU TRP SER GLY LEU ARG ASN ALA PRO ARG CYS TRP SEQRES 6 A 127 ASP ALA ILE ARG PRO LEU LEU CYS ALA VAL TYR MET PRO SEQRES 7 A 127 LYS CYS GLU GLY GLY LYS VAL GLU LEU PRO SER GLN GLY SEQRES 8 A 127 LEU CYS GLN THR THR ARG VAL PRO CYS ALA ILE VAL ALA SEQRES 9 A 127 ARG GLU ARG GLY TRP PRO ASP PHE LEU LYS CYS THR THR SEQRES 10 A 127 ASP TYR PHE PRO GLU GLY CYS PRO ASN GLU HET HCD A 400 29 HETNAM HCD (3ALPHA,8ALPHA)-CHOLEST-5-ENE-3,20-DIOL HETSYN HCD 20S-HYDROXYCHOLESTEROL FORMUL 2 HCD C27 H46 O2 FORMUL 3 HOH *235(H2 O) HELIX 1 AA1 SER A 71 SER A 83 1 13 HELIX 2 AA2 GLY A 84 ASN A 87 5 4 HELIX 3 AA3 ALA A 88 MET A 104 1 17 HELIX 4 AA4 SER A 116 THR A 122 1 7 HELIX 5 AA5 CYS A 127 ARG A 134 1 8 HELIX 6 AA6 PRO A 137 LYS A 141 5 5 SHEET 1 AA1 3 LYS A 38 THR A 40 0 SHEET 2 AA1 3 LYS A 111 GLU A 113 -1 O VAL A 112 N LYS A 39 SHEET 3 AA1 3 CYS A 107 GLU A 108 -1 N GLU A 108 O LYS A 111 SHEET 1 AA2 2 GLU A 44 PRO A 45 0 SHEET 2 AA2 2 LEU A 60 THR A 61 -1 O THR A 61 N GLU A 44 SHEET 1 AA3 2 ILE A 50 CYS A 51 0 SHEET 2 AA3 2 SER A 54 VAL A 55 -1 O SER A 54 N CYS A 51 SSBOND 1 CYS A 37 CYS A 151 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 107 1555 1555 2.03 SSBOND 3 CYS A 51 CYS A 100 1555 1555 2.05 SSBOND 4 CYS A 91 CYS A 127 1555 1555 2.07 SSBOND 5 CYS A 120 CYS A 142 1555 1555 2.05 SITE 1 AC1 10 ASP A 68 LEU A 81 TRP A 82 LEU A 85 SITE 2 AC1 10 ASN A 87 GLU A 133 ARG A 134 HOH A 505 SITE 3 AC1 10 HOH A 562 HOH A 593 CRYST1 73.248 28.349 61.929 90.00 104.27 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013652 0.000000 0.003471 0.00000 SCALE2 0.000000 0.035275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016661 0.00000