data_5L00 # _entry.id 5L00 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5L00 pdb_00005l00 10.2210/pdb5l00/pdb WWPDB D_1000222984 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L00 _pdbx_database_status.recvd_initial_deposition_date 2016-07-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, W.' 1 'Tam, C.P.' 2 'Szostak, J.W.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Cent Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2374-7943 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 916 _citation.page_last 926 _citation.title 'Unusual Base-Pairing Interactions in Monomer-Template Complexes.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acscentsci.6b00278 _citation.pdbx_database_id_PubMed 28058281 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Wang, J.' 3 ? primary 'Szostak, J.W.' 4 ? # _cell.entry_id 5L00 _cell.length_a 43.846 _cell.length_b 43.846 _cell.length_c 86.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L00 _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') ; 4858.010 4 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 4 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 water nat water 18.015 176 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCGG' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n 1 15 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5L00 _struct_ref.pdbx_db_accession 5L00 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5L00 A 1 ? 15 ? 5L00 1 ? 15 ? 1 15 2 1 5L00 B 1 ? 15 ? 5L00 1 ? 15 ? 1 15 3 1 5L00 C 1 ? 15 ? 5L00 1 ? 15 ? 1 15 4 1 5L00 D 1 ? 15 ? 5L00 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L00 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.18 _exptl_crystal.description 'diamond shape' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040 M Sodium cacodylate trihydrate pH 7.0, 0.012 M Spermine tetrahydrochloride, 0.012 M Sodium chloride, 0.080 M Potassium chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5L00 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 51401 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.0 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.045 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 34.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.956 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.29 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.46 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 64.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.277 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.854 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5L00 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 45234 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.972 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 92.65 _refine.ls_R_factor_obs 0.20999 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20851 _refine.ls_R_factor_R_free 0.23859 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2387 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 16.846 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4NFO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.055 _refine.pdbx_overall_ESU_R_Free 0.058 _refine.overall_SU_ML 0.033 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.755 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1288 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 1564 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 37.972 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.015 ? 1536 'X-RAY DIFFRACTION' ? r_bond_other_d 0.082 0.023 ? 680 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.985 1.721 ? 2380 'X-RAY DIFFRACTION' ? r_angle_other_deg 3.905 3.187 ? 1640 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.754 0.200 ? 268 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.031 0.020 ? 776 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.005 0.021 ? 304 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.612 1.682 ? 1536 'X-RAY DIFFRACTION' ? r_scbond_other 1.613 1.682 ? 1535 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.190 2.537 ? 2381 'X-RAY DIFFRACTION' ? r_long_range_B_refined 3.771 17.325 ? 2381 'X-RAY DIFFRACTION' ? r_long_range_B_other 3.770 17.281 ? 2370 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.251 _refine_ls_shell.d_res_low 1.283 _refine_ls_shell.number_reflns_R_work 2258 _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.percent_reflns_obs 62.48 _refine_ls_shell.R_factor_R_free 0.376 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5L00 _struct.title 'Self-complimentary RNA 15mer binding with GMP monomers' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L00 _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.639 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.683 ? ? covale5 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.699 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale9 covale both ? C LCC 1 "O3'" ? ? ? 1_555 C LCC 2 P ? ? C LCC 1 C LCC 2 1_555 ? ? ? ? ? ? ? 1.687 ? ? covale10 covale both ? C LCC 2 "O3'" ? ? ? 1_555 C LCC 3 P ? ? C LCC 2 C LCC 3 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale11 covale both ? C LCC 3 "O3'" ? ? ? 1_555 C LCG 4 P ? ? C LCC 3 C LCG 4 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale12 covale both ? C LCG 4 "O3'" ? ? ? 1_555 C A 5 P ? ? C LCG 4 C A 5 1_555 ? ? ? ? ? ? ? 1.699 ? ? covale13 covale both ? D LCC 1 "O3'" ? ? ? 1_555 D LCC 2 P ? ? D LCC 1 D LCC 2 1_555 ? ? ? ? ? ? ? 1.681 ? ? covale14 covale both ? D LCC 2 "O3'" ? ? ? 1_555 D LCC 3 P ? ? D LCC 2 D LCC 3 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale15 covale both ? D LCC 3 "O3'" ? ? ? 1_555 D LCG 4 P ? ? D LCC 3 D LCG 4 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale16 covale both ? D LCG 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D LCG 4 D A 5 1_555 ? ? ? ? ? ? ? 1.567 ? ? metalc1 metalc ? ? A G 15 "O3'" ? ? ? 1_555 G MG . MG ? ? A G 15 A MG 103 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc2 metalc ? ? A G 15 "O2'" ? ? ? 1_555 G MG . MG ? ? A G 15 A MG 103 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc3 metalc ? ? A G 15 "O3'" ? ? ? 1_555 G MG . MG ? ? A G 15 A MG 103 2_555 ? ? ? ? ? ? ? 2.343 ? ? metalc4 metalc ? ? A G 15 "O2'" ? ? ? 1_555 G MG . MG ? ? A G 15 A MG 103 2_555 ? ? ? ? ? ? ? 2.311 ? ? metalc5 metalc ? ? B G 15 "O3'" ? ? ? 1_555 H MG . MG ? ? B G 15 B MG 101 1_555 ? ? ? ? ? ? ? 2.457 ? ? metalc6 metalc ? ? B G 15 "O2'" ? ? ? 1_555 H MG . MG ? ? B G 15 B MG 101 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc7 metalc ? ? B G 15 "O3'" ? ? ? 1_555 H MG . MG ? ? B G 15 B MG 101 3_555 ? ? ? ? ? ? ? 2.475 ? ? metalc8 metalc ? ? B G 15 "O2'" ? ? ? 1_555 H MG . MG ? ? B G 15 B MG 101 3_555 ? ? ? ? ? ? ? 2.922 ? ? metalc9 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 B HOH 243 1_555 ? ? ? ? ? ? ? 2.932 ? ? metalc10 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 B HOH 243 3_555 ? ? ? ? ? ? ? 2.932 ? ? metalc11 metalc ? ? C G 15 "O3'" ? ? ? 1_555 I MG . MG ? ? C G 15 C MG 101 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc12 metalc ? ? C G 15 "O2'" ? ? ? 1_555 I MG . MG ? ? C G 15 C MG 101 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc13 metalc ? ? C G 15 "O3'" ? ? ? 1_555 I MG . MG ? ? C G 15 C MG 101 3_565 ? ? ? ? ? ? ? 2.354 ? ? metalc14 metalc ? ? C G 15 "O2'" ? ? ? 1_555 I MG . MG ? ? C G 15 C MG 101 3_565 ? ? ? ? ? ? ? 2.313 ? ? metalc15 metalc ? ? D G 15 "O3'" ? ? ? 1_555 L MG . MG ? ? D G 15 D MG 101 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc16 metalc ? ? D G 15 "O2'" ? ? ? 1_555 L MG . MG ? ? D G 15 D MG 101 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc17 metalc ? ? D G 15 "O3'" ? ? ? 1_555 L MG . MG ? ? D G 15 D MG 101 3_565 ? ? ? ? ? ? ? 2.458 ? ? metalc18 metalc ? ? D G 15 "O2'" ? ? ? 1_555 L MG . MG ? ? D G 15 D MG 101 2_665 ? ? ? ? ? ? ? 2.882 ? ? metalc19 metalc ? ? L MG . MG ? ? ? 1_555 P HOH . O ? ? D MG 101 D HOH 241 1_555 ? ? ? ? ? ? ? 2.934 ? ? metalc20 metalc ? ? L MG . MG ? ? ? 1_555 P HOH . O ? ? D MG 101 D HOH 241 2_665 ? ? ? ? ? ? ? 2.934 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C LCG 4 N1 ? ? ? 1_555 D C 13 N3 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C LCG 4 N2 ? ? ? 1_555 D C 13 O2 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C LCG 4 O6 ? ? ? 1_555 D C 13 N4 ? ? C LCG 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C U 7 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 7 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 9 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 9 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 10 N1 ? ? ? 1_555 D U 7 N3 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C A 10 N6 ? ? ? 1_555 D U 7 O4 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 13 N3 ? ? ? 1_555 D LCG 4 N1 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 13 N4 ? ? ? 1_555 D LCG 4 O6 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 13 O2 ? ? ? 1_555 D LCG 4 N2 ? ? C C 13 D LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A G 101 ? 7 'binding site for residue G A 101' AC2 Software A G 102 ? 9 'binding site for residue G A 102' AC3 Software A MG 103 ? 3 'binding site for residue MG A 103' AC4 Software B MG 101 ? 6 'binding site for residue MG B 101' AC5 Software C MG 101 ? 3 'binding site for residue MG C 101' AC6 Software C G 102 ? 7 'binding site for residue G C 102' AC7 Software C G 103 ? 8 'binding site for residue G C 103' AC8 Software D MG 101 ? 6 'binding site for residue MG D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 15 ? G A 15 . ? 1_555 ? 2 AC1 7 G A 15 ? G A 15 . ? 2_555 ? 3 AC1 7 HOH M . ? HOH A 201 . ? 1_555 ? 4 AC1 7 LCC B 1 ? LCC B 1 . ? 1_555 ? 5 AC1 7 LCC B 2 ? LCC B 2 . ? 1_555 ? 6 AC1 7 HOH N . ? HOH B 224 . ? 1_555 ? 7 AC1 7 LCC D 1 ? LCC D 1 . ? 1_555 ? 8 AC2 9 LCC A 1 ? LCC A 1 . ? 1_555 ? 9 AC2 9 LCC A 2 ? LCC A 2 . ? 1_555 ? 10 AC2 9 HOH M . ? HOH A 208 . ? 1_555 ? 11 AC2 9 HOH M . ? HOH A 221 . ? 1_555 ? 12 AC2 9 HOH M . ? HOH A 237 . ? 1_555 ? 13 AC2 9 G B 15 ? G B 15 . ? 3_555 ? 14 AC2 9 G B 15 ? G B 15 . ? 1_555 ? 15 AC2 9 HOH N . ? HOH B 225 . ? 1_555 ? 16 AC2 9 LCC C 1 ? LCC C 1 . ? 2_656 ? 17 AC3 3 G A 15 ? G A 15 . ? 3_555 ? 18 AC3 3 G A 15 ? G A 15 . ? 1_555 ? 19 AC3 3 G A 15 ? G A 15 . ? 2_555 ? 20 AC4 6 G B 15 ? G B 15 . ? 1_555 ? 21 AC4 6 G B 15 ? G B 15 . ? 3_555 ? 22 AC4 6 G B 15 ? G B 15 . ? 2_555 ? 23 AC4 6 HOH N . ? HOH B 243 . ? 3_555 ? 24 AC4 6 HOH N . ? HOH B 243 . ? 2_555 ? 25 AC4 6 HOH N . ? HOH B 243 . ? 1_555 ? 26 AC5 3 G C 15 ? G C 15 . ? 3_565 ? 27 AC5 3 G C 15 ? G C 15 . ? 1_555 ? 28 AC5 3 G C 15 ? G C 15 . ? 2_665 ? 29 AC6 7 LCC B 1 ? LCC B 1 . ? 1_555 ? 30 AC6 7 G C 15 ? G C 15 . ? 3_565 ? 31 AC6 7 G C 15 ? G C 15 . ? 1_555 ? 32 AC6 7 HOH O . ? HOH C 219 . ? 1_555 ? 33 AC6 7 LCC D 1 ? LCC D 1 . ? 1_555 ? 34 AC6 7 LCC D 2 ? LCC D 2 . ? 1_555 ? 35 AC6 7 HOH P . ? HOH D 223 . ? 1_555 ? 36 AC7 8 LCC A 1 ? LCC A 1 . ? 3_664 ? 37 AC7 8 LCC C 1 ? LCC C 1 . ? 1_555 ? 38 AC7 8 LCC C 2 ? LCC C 2 . ? 1_555 ? 39 AC7 8 HOH O . ? HOH C 223 . ? 1_555 ? 40 AC7 8 HOH O . ? HOH C 235 . ? 1_555 ? 41 AC7 8 G D 15 ? G D 15 . ? 2_665 ? 42 AC7 8 G D 15 ? G D 15 . ? 1_555 ? 43 AC7 8 HOH P . ? HOH D 225 . ? 1_555 ? 44 AC8 6 G D 15 ? G D 15 . ? 3_565 ? 45 AC8 6 G D 15 ? G D 15 . ? 1_555 ? 46 AC8 6 G D 15 ? G D 15 . ? 2_665 ? 47 AC8 6 HOH P . ? HOH D 241 . ? 3_565 ? 48 AC8 6 HOH P . ? HOH D 241 . ? 2_665 ? 49 AC8 6 HOH P . ? HOH D 241 . ? 1_555 ? # _atom_sites.entry_id 5L00 _atom_sites.fract_transf_matrix[1][1] 0.022807 _atom_sites.fract_transf_matrix[1][2] 0.013168 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 G 15 15 15 G G B . n C 1 1 LCC 1 1 1 LCC LCC C . n C 1 2 LCC 2 2 2 LCC LCC C . n C 1 3 LCC 3 3 3 LCC LCC C . n C 1 4 LCG 4 4 4 LCG LCG C . n C 1 5 A 5 5 5 A A C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 G 14 14 14 G G C . n C 1 15 G 15 15 15 G G C . n D 1 1 LCC 1 1 1 LCC LCC D . n D 1 2 LCC 2 2 2 LCC LCC D . n D 1 3 LCC 3 3 3 LCC LCC D . n D 1 4 LCG 4 4 4 LCG LCG D . n D 1 5 A 5 5 5 A A D . n D 1 6 C 6 6 6 C C D . n D 1 7 U 7 7 7 U U D . n D 1 8 U 8 8 8 U U D . n D 1 9 A 9 9 9 A A D . n D 1 10 A 10 10 10 A A D . n D 1 11 G 11 11 11 G G D . n D 1 12 U 12 12 12 U U D . n D 1 13 C 13 13 13 C C D . n D 1 14 G 14 14 14 G G D . n D 1 15 G 15 15 15 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G 1 101 101 G G A . F 2 G 1 102 102 G G A . G 3 MG 1 103 103 MG MG A . H 3 MG 1 101 101 MG MG B . I 3 MG 1 101 103 MG MG C . J 2 G 1 102 101 G G C . K 2 G 1 103 102 G G C . L 3 MG 1 101 101 MG MG D . M 4 HOH 1 201 202 HOH HOH A . M 4 HOH 2 202 201 HOH HOH A . M 4 HOH 3 203 203 HOH HOH A . M 4 HOH 4 204 204 HOH HOH A . M 4 HOH 5 205 206 HOH HOH A . M 4 HOH 6 206 205 HOH HOH A . M 4 HOH 7 207 207 HOH HOH A . M 4 HOH 8 208 209 HOH HOH A . M 4 HOH 9 209 208 HOH HOH A . M 4 HOH 10 210 210 HOH HOH A . M 4 HOH 11 211 211 HOH HOH A . M 4 HOH 12 212 212 HOH HOH A . M 4 HOH 13 213 214 HOH HOH A . M 4 HOH 14 214 213 HOH HOH A . M 4 HOH 15 215 215 HOH HOH A . M 4 HOH 16 216 217 HOH HOH A . M 4 HOH 17 217 216 HOH HOH A . M 4 HOH 18 218 218 HOH HOH A . M 4 HOH 19 219 219 HOH HOH A . M 4 HOH 20 220 222 HOH HOH A . M 4 HOH 21 221 221 HOH HOH A . M 4 HOH 22 222 223 HOH HOH A . M 4 HOH 23 223 220 HOH HOH A . M 4 HOH 24 224 225 HOH HOH A . M 4 HOH 25 225 224 HOH HOH A . M 4 HOH 26 226 227 HOH HOH A . M 4 HOH 27 227 228 HOH HOH A . M 4 HOH 28 228 229 HOH HOH A . M 4 HOH 29 229 230 HOH HOH A . M 4 HOH 30 230 231 HOH HOH A . M 4 HOH 31 231 232 HOH HOH A . M 4 HOH 32 232 234 HOH HOH A . M 4 HOH 33 233 233 HOH HOH A . M 4 HOH 34 234 237 HOH HOH A . M 4 HOH 35 235 236 HOH HOH A . M 4 HOH 36 236 235 HOH HOH A . M 4 HOH 37 237 238 HOH HOH A . M 4 HOH 38 238 239 HOH HOH A . M 4 HOH 39 239 240 HOH HOH A . M 4 HOH 40 240 241 HOH HOH A . M 4 HOH 41 241 242 HOH HOH A . M 4 HOH 42 242 244 HOH HOH A . M 4 HOH 43 243 245 HOH HOH A . M 4 HOH 44 244 247 HOH HOH A . M 4 HOH 45 245 243 HOH HOH A . M 4 HOH 46 246 246 HOH HOH A . M 4 HOH 47 247 248 HOH HOH A . N 4 HOH 1 201 205 HOH HOH B . N 4 HOH 2 202 203 HOH HOH B . N 4 HOH 3 203 204 HOH HOH B . N 4 HOH 4 204 206 HOH HOH B . N 4 HOH 5 205 215 HOH HOH B . N 4 HOH 6 206 207 HOH HOH B . N 4 HOH 7 207 209 HOH HOH B . N 4 HOH 8 208 212 HOH HOH B . N 4 HOH 9 209 211 HOH HOH B . N 4 HOH 10 210 213 HOH HOH B . N 4 HOH 11 211 210 HOH HOH B . N 4 HOH 12 212 219 HOH HOH B . N 4 HOH 13 213 208 HOH HOH B . N 4 HOH 14 214 214 HOH HOH B . N 4 HOH 15 215 202 HOH HOH B . N 4 HOH 16 216 216 HOH HOH B . N 4 HOH 17 217 221 HOH HOH B . N 4 HOH 18 218 220 HOH HOH B . N 4 HOH 19 219 218 HOH HOH B . N 4 HOH 20 220 217 HOH HOH B . N 4 HOH 21 221 222 HOH HOH B . N 4 HOH 22 222 223 HOH HOH B . N 4 HOH 23 223 225 HOH HOH B . N 4 HOH 24 224 226 HOH HOH B . N 4 HOH 25 225 224 HOH HOH B . N 4 HOH 26 226 227 HOH HOH B . N 4 HOH 27 227 231 HOH HOH B . N 4 HOH 28 228 230 HOH HOH B . N 4 HOH 29 229 228 HOH HOH B . N 4 HOH 30 230 229 HOH HOH B . N 4 HOH 31 231 232 HOH HOH B . N 4 HOH 32 232 235 HOH HOH B . N 4 HOH 33 233 234 HOH HOH B . N 4 HOH 34 234 236 HOH HOH B . N 4 HOH 35 235 233 HOH HOH B . N 4 HOH 36 236 238 HOH HOH B . N 4 HOH 37 237 237 HOH HOH B . N 4 HOH 38 238 239 HOH HOH B . N 4 HOH 39 239 240 HOH HOH B . N 4 HOH 40 240 241 HOH HOH B . N 4 HOH 41 241 242 HOH HOH B . N 4 HOH 42 242 243 HOH HOH B . N 4 HOH 43 243 244 HOH HOH B . O 4 HOH 1 201 201 HOH HOH C . O 4 HOH 2 202 202 HOH HOH C . O 4 HOH 3 203 203 HOH HOH C . O 4 HOH 4 204 205 HOH HOH C . O 4 HOH 5 205 204 HOH HOH C . O 4 HOH 6 206 208 HOH HOH C . O 4 HOH 7 207 206 HOH HOH C . O 4 HOH 8 208 209 HOH HOH C . O 4 HOH 9 209 207 HOH HOH C . O 4 HOH 10 210 211 HOH HOH C . O 4 HOH 11 211 210 HOH HOH C . O 4 HOH 12 212 213 HOH HOH C . O 4 HOH 13 213 212 HOH HOH C . O 4 HOH 14 214 214 HOH HOH C . O 4 HOH 15 215 215 HOH HOH C . O 4 HOH 16 216 216 HOH HOH C . O 4 HOH 17 217 218 HOH HOH C . O 4 HOH 18 218 217 HOH HOH C . O 4 HOH 19 219 221 HOH HOH C . O 4 HOH 20 220 222 HOH HOH C . O 4 HOH 21 221 224 HOH HOH C . O 4 HOH 22 222 220 HOH HOH C . O 4 HOH 23 223 219 HOH HOH C . O 4 HOH 24 224 227 HOH HOH C . O 4 HOH 25 225 223 HOH HOH C . O 4 HOH 26 226 225 HOH HOH C . O 4 HOH 27 227 226 HOH HOH C . O 4 HOH 28 228 228 HOH HOH C . O 4 HOH 29 229 229 HOH HOH C . O 4 HOH 30 230 233 HOH HOH C . O 4 HOH 31 231 230 HOH HOH C . O 4 HOH 32 232 231 HOH HOH C . O 4 HOH 33 233 232 HOH HOH C . O 4 HOH 34 234 236 HOH HOH C . O 4 HOH 35 235 235 HOH HOH C . O 4 HOH 36 236 237 HOH HOH C . O 4 HOH 37 237 238 HOH HOH C . O 4 HOH 38 238 239 HOH HOH C . O 4 HOH 39 239 240 HOH HOH C . O 4 HOH 40 240 242 HOH HOH C . O 4 HOH 41 241 241 HOH HOH C . O 4 HOH 42 242 243 HOH HOH C . O 4 HOH 43 243 234 HOH HOH C . O 4 HOH 44 244 244 HOH HOH C . O 4 HOH 45 245 245 HOH HOH C . P 4 HOH 1 201 201 HOH HOH D . P 4 HOH 2 202 202 HOH HOH D . P 4 HOH 3 203 203 HOH HOH D . P 4 HOH 4 204 205 HOH HOH D . P 4 HOH 5 205 204 HOH HOH D . P 4 HOH 6 206 206 HOH HOH D . P 4 HOH 7 207 208 HOH HOH D . P 4 HOH 8 208 209 HOH HOH D . P 4 HOH 9 209 207 HOH HOH D . P 4 HOH 10 210 210 HOH HOH D . P 4 HOH 11 211 211 HOH HOH D . P 4 HOH 12 212 213 HOH HOH D . P 4 HOH 13 213 212 HOH HOH D . P 4 HOH 14 214 215 HOH HOH D . P 4 HOH 15 215 216 HOH HOH D . P 4 HOH 16 216 214 HOH HOH D . P 4 HOH 17 217 217 HOH HOH D . P 4 HOH 18 218 218 HOH HOH D . P 4 HOH 19 219 220 HOH HOH D . P 4 HOH 20 220 221 HOH HOH D . P 4 HOH 21 221 223 HOH HOH D . P 4 HOH 22 222 219 HOH HOH D . P 4 HOH 23 223 222 HOH HOH D . P 4 HOH 24 224 225 HOH HOH D . P 4 HOH 25 225 224 HOH HOH D . P 4 HOH 26 226 226 HOH HOH D . P 4 HOH 27 227 227 HOH HOH D . P 4 HOH 28 228 228 HOH HOH D . P 4 HOH 29 229 229 HOH HOH D . P 4 HOH 30 230 230 HOH HOH D . P 4 HOH 31 231 233 HOH HOH D . P 4 HOH 32 232 232 HOH HOH D . P 4 HOH 33 233 231 HOH HOH D . P 4 HOH 34 234 234 HOH HOH D . P 4 HOH 35 235 235 HOH HOH D . P 4 HOH 36 236 236 HOH HOH D . P 4 HOH 37 237 238 HOH HOH D . P 4 HOH 38 238 237 HOH HOH D . P 4 HOH 39 239 239 HOH HOH D . P 4 HOH 40 240 240 HOH HOH D . P 4 HOH 41 241 241 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,M,N 2 1 C,D,I,J,K,L,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2790 ? 1 MORE 11 ? 1 'SSA (A^2)' 5850 ? 2 'ABSA (A^2)' 2800 ? 2 MORE 11 ? 2 'SSA (A^2)' 5860 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 103 ? G MG . 2 1 B MG 101 ? H MG . 3 1 C MG 101 ? I MG . 4 1 D MG 101 ? L MG . 5 1 A HOH 223 ? M HOH . 6 1 A HOH 236 ? M HOH . 7 1 A HOH 245 ? M HOH . 8 1 A HOH 246 ? M HOH . 9 1 B HOH 213 ? N HOH . 10 1 B HOH 215 ? N HOH . 11 1 B HOH 243 ? N HOH . 12 1 C HOH 222 ? O HOH . 13 1 C HOH 228 ? O HOH . 14 1 C HOH 240 ? O HOH . 15 1 C HOH 243 ? O HOH . 16 1 D HOH 204 ? P HOH . 17 1 D HOH 211 ? P HOH . 18 1 D HOH 241 ? P HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O2'" ? A G 15 ? A G 15 ? 1_555 70.7 ? 2 "O3'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O3'" ? A G 15 ? A G 15 ? 1_555 0.0 ? 3 "O2'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O3'" ? A G 15 ? A G 15 ? 1_555 70.7 ? 4 "O3'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O2'" ? A G 15 ? A G 15 ? 1_555 70.7 ? 5 "O2'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O2'" ? A G 15 ? A G 15 ? 1_555 0.0 ? 6 "O3'" ? A G 15 ? A G 15 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O2'" ? A G 15 ? A G 15 ? 1_555 70.7 ? 7 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O2'" ? B G 15 ? B G 15 ? 1_555 61.0 ? 8 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O3'" ? B G 15 ? B G 15 ? 1_555 0.0 ? 9 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O3'" ? B G 15 ? B G 15 ? 1_555 61.0 ? 10 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O2'" ? B G 15 ? B G 15 ? 1_555 61.0 ? 11 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O2'" ? B G 15 ? B G 15 ? 1_555 0.0 ? 12 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 "O2'" ? B G 15 ? B G 15 ? 1_555 61.0 ? 13 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 1_555 85.6 ? 14 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 1_555 137.3 ? 15 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 1_555 85.6 ? 16 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 1_555 137.3 ? 17 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 3_555 86.6 ? 18 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 3_555 137.7 ? 19 "O3'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 3_555 86.6 ? 20 "O2'" ? B G 15 ? B G 15 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 3_555 137.7 ? 21 O ? N HOH . ? B HOH 243 ? 1_555 MG ? H MG . ? B MG 101 ? 1_555 O ? N HOH . ? B HOH 243 ? 3_555 1.1 ? 22 "O3'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O2'" ? C G 15 ? C G 15 ? 1_555 70.6 ? 23 "O3'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O3'" ? C G 15 ? C G 15 ? 1_555 0.0 ? 24 "O2'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O3'" ? C G 15 ? C G 15 ? 1_555 70.6 ? 25 "O3'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O2'" ? C G 15 ? C G 15 ? 1_555 70.6 ? 26 "O2'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O2'" ? C G 15 ? C G 15 ? 1_555 0.0 ? 27 "O3'" ? C G 15 ? C G 15 ? 1_555 MG ? I MG . ? C MG 101 ? 1_555 "O2'" ? C G 15 ? C G 15 ? 1_555 70.6 ? 28 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O2'" ? D G 15 ? D G 15 ? 1_555 60.7 ? 29 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O3'" ? D G 15 ? D G 15 ? 1_555 0.0 ? 30 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O3'" ? D G 15 ? D G 15 ? 1_555 60.7 ? 31 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O2'" ? D G 15 ? D G 15 ? 1_555 60.7 ? 32 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O2'" ? D G 15 ? D G 15 ? 1_555 0.0 ? 33 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 "O2'" ? D G 15 ? D G 15 ? 1_555 60.7 ? 34 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 1_555 85.5 ? 35 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 1_555 137.3 ? 36 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 1_555 85.5 ? 37 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 1_555 137.3 ? 38 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 2_665 85.6 ? 39 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 2_665 137.3 ? 40 "O3'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 2_665 85.6 ? 41 "O2'" ? D G 15 ? D G 15 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 2_665 137.3 ? 42 O ? P HOH . ? D HOH 241 ? 1_555 MG ? L MG . ? D MG 101 ? 1_555 O ? P HOH . ? D HOH 241 ? 2_665 0.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-01-18 3 'Structure model' 1 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.conn_type_id' 17 3 'Structure model' '_struct_conn.id' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCG 4 ? ? P A A 5 ? ? 1.683 1.607 0.076 0.012 Y 2 1 P A A 5 ? ? OP2 A A 5 ? ? 1.374 1.485 -0.111 0.017 N 3 1 P A U 8 ? ? OP2 A U 8 ? ? 1.363 1.485 -0.122 0.017 N 4 1 P A U 12 ? ? OP2 A U 12 ? ? 1.362 1.485 -0.123 0.017 N 5 1 "O3'" A U 12 ? ? P A C 13 ? ? 1.508 1.607 -0.099 0.012 Y 6 1 "O5'" A G 15 ? ? "C5'" A G 15 ? ? 1.298 1.420 -0.122 0.009 N 7 1 "O3'" B LCC 1 ? ? P B LCC 2 ? ? 1.699 1.607 0.092 0.012 Y 8 1 "O3'" B U 8 ? ? P B A 9 ? ? 1.534 1.607 -0.073 0.012 Y 9 1 P B G 14 ? ? OP2 B G 14 ? ? 1.369 1.485 -0.116 0.017 N 10 1 "O3'" C LCC 1 ? ? P C LCC 2 ? ? 1.687 1.607 0.080 0.012 Y 11 1 "O3'" C LCG 4 ? ? P C A 5 ? ? 1.699 1.607 0.092 0.012 Y 12 1 P C U 8 ? ? OP2 C U 8 ? ? 1.364 1.485 -0.121 0.017 N 13 1 P C U 12 ? ? OP2 C U 12 ? ? 1.375 1.485 -0.110 0.017 N 14 1 "O3'" C U 12 ? ? P C C 13 ? ? 1.505 1.607 -0.102 0.012 Y 15 1 "O5'" C G 15 ? ? "C5'" C G 15 ? ? 1.289 1.420 -0.131 0.009 N 16 1 "O3'" D LCC 1 ? ? P D LCC 2 ? ? 1.681 1.607 0.074 0.012 Y 17 1 "O3'" D U 8 ? ? P D A 9 ? ? 1.531 1.607 -0.076 0.012 Y 18 1 P D G 14 ? ? OP2 D G 14 ? ? 1.375 1.485 -0.110 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 15 ? ? "C5'" A G 15 ? ? "C4'" A G 15 ? ? 104.14 109.40 -5.26 0.80 N 2 1 "C5'" A G 15 ? ? "C4'" A G 15 ? ? "C3'" A G 15 ? ? 103.08 115.20 -12.12 1.40 N 3 1 "O5'" B G 11 ? ? P B G 11 ? ? OP2 B G 11 ? ? 93.42 105.70 -12.28 0.90 N 4 1 "C5'" B G 11 ? ? "C4'" B G 11 ? ? "C3'" B G 11 ? ? 126.56 116.00 10.56 1.60 N 5 1 "C5'" C G 15 ? ? "C4'" C G 15 ? ? "C3'" C G 15 ? ? 104.35 115.20 -10.85 1.40 N 6 1 "O5'" D G 11 ? ? P D G 11 ? ? OP2 D G 11 ? ? 91.03 105.70 -14.67 0.90 N 7 1 "C5'" D G 11 ? ? "C4'" D G 11 ? ? "C3'" D G 11 ? ? 126.84 116.00 10.84 1.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 7 ? ? 0.073 'SIDE CHAIN' 2 1 U C 7 ? ? 0.076 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LCC "O5'" O N N 114 LCC "C5'" C N N 115 LCC "C4'" C N R 116 LCC "O4'" O N N 117 LCC "C1'" C N R 118 LCC N1 N N N 119 LCC C6 C N N 120 LCC C5 C N N 121 LCC C5M C N N 122 LCC C4 C N N 123 LCC N4 N N N 124 LCC N3 N N N 125 LCC C2 C N N 126 LCC O2 O N N 127 LCC "C3'" C N S 128 LCC "C2'" C N R 129 LCC "O2'" O N N 130 LCC "O3'" O N N 131 LCC "C6'" C N N 132 LCC P P N N 133 LCC O1P O N N 134 LCC O2P O N N 135 LCC OXT O N N 136 LCC "H5'1" H N N 137 LCC "H5'2" H N N 138 LCC "H1'" H N N 139 LCC H6 H N N 140 LCC H5M1 H N N 141 LCC H5M2 H N N 142 LCC H5M3 H N N 143 LCC H41 H N N 144 LCC H42 H N N 145 LCC "H3'" H N N 146 LCC "H2'1" H N N 147 LCC H3T H N N 148 LCC "H6'1" H N N 149 LCC "H6'2" H N N 150 LCC H1P H N N 151 LCC HXT H N N 152 LCG P P N N 153 LCG OP1 O N N 154 LCG "O5'" O N N 155 LCG "C5'" C N N 156 LCG "C3'" C N S 157 LCG "C6'" C N N 158 LCG N9 N Y N 159 LCG C8 C Y N 160 LCG C4 C Y N 161 LCG N7 N Y N 162 LCG C5 C Y N 163 LCG C6 C N N 164 LCG "C2'" C N R 165 LCG O6 O N N 166 LCG "C4'" C N R 167 LCG "C1'" C N R 168 LCG C2 C N N 169 LCG N1 N N N 170 LCG "O4'" O N N 171 LCG OP2 O N N 172 LCG N2 N N N 173 LCG N3 N N N 174 LCG "O2'" O N N 175 LCG "O3'" O N N 176 LCG OP3 O N N 177 LCG "H5'" H N N 178 LCG "H5''" H N N 179 LCG "H3'" H N N 180 LCG "H6'1" H N N 181 LCG "H6'2" H N N 182 LCG H8 H N N 183 LCG "H2'" H N N 184 LCG "H1'" H N N 185 LCG H1 H N N 186 LCG HOP2 H N N 187 LCG H21 H N N 188 LCG H22 H N N 189 LCG "HO3'" H N N 190 LCG HOP3 H N N 191 MG MG MG N N 192 U OP3 O N N 193 U P P N N 194 U OP1 O N N 195 U OP2 O N N 196 U "O5'" O N N 197 U "C5'" C N N 198 U "C4'" C N R 199 U "O4'" O N N 200 U "C3'" C N S 201 U "O3'" O N N 202 U "C2'" C N R 203 U "O2'" O N N 204 U "C1'" C N R 205 U N1 N N N 206 U C2 C N N 207 U O2 O N N 208 U N3 N N N 209 U C4 C N N 210 U O4 O N N 211 U C5 C N N 212 U C6 C N N 213 U HOP3 H N N 214 U HOP2 H N N 215 U "H5'" H N N 216 U "H5''" H N N 217 U "H4'" H N N 218 U "H3'" H N N 219 U "HO3'" H N N 220 U "H2'" H N N 221 U "HO2'" H N N 222 U "H1'" H N N 223 U H3 H N N 224 U H5 H N N 225 U H6 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LCC "O5'" "C5'" sing N N 118 LCC "O5'" P sing N N 119 LCC "C5'" "C4'" sing N N 120 LCC "C5'" "H5'1" sing N N 121 LCC "C5'" "H5'2" sing N N 122 LCC "C4'" "O4'" sing N N 123 LCC "C4'" "C3'" sing N N 124 LCC "C4'" "C6'" sing N N 125 LCC "O4'" "C1'" sing N N 126 LCC "C1'" N1 sing N N 127 LCC "C1'" "C2'" sing N N 128 LCC "C1'" "H1'" sing N N 129 LCC N1 C6 sing N N 130 LCC N1 C2 sing N N 131 LCC C6 C5 doub N N 132 LCC C6 H6 sing N N 133 LCC C5 C5M sing N N 134 LCC C5 C4 sing N N 135 LCC C5M H5M1 sing N N 136 LCC C5M H5M2 sing N N 137 LCC C5M H5M3 sing N N 138 LCC C4 N4 sing N N 139 LCC C4 N3 doub N N 140 LCC N4 H41 sing N N 141 LCC N4 H42 sing N N 142 LCC N3 C2 sing N N 143 LCC C2 O2 doub N N 144 LCC "C3'" "C2'" sing N N 145 LCC "C3'" "O3'" sing N N 146 LCC "C3'" "H3'" sing N N 147 LCC "C2'" "O2'" sing N N 148 LCC "C2'" "H2'1" sing N N 149 LCC "O2'" "C6'" sing N N 150 LCC "O3'" H3T sing N N 151 LCC "C6'" "H6'1" sing N N 152 LCC "C6'" "H6'2" sing N N 153 LCC P O1P sing N N 154 LCC P O2P doub N N 155 LCC P OXT sing N N 156 LCC O1P H1P sing N N 157 LCC OXT HXT sing N N 158 LCG P OP1 doub N N 159 LCG P "O5'" sing N N 160 LCG P OP2 sing N N 161 LCG P OP3 sing N N 162 LCG "O5'" "C5'" sing N N 163 LCG "C5'" "C4'" sing N N 164 LCG "C5'" "H5'" sing N N 165 LCG "C5'" "H5''" sing N N 166 LCG "C3'" "C2'" sing N N 167 LCG "C3'" "C4'" sing N N 168 LCG "C3'" "O3'" sing N N 169 LCG "C3'" "H3'" sing N N 170 LCG "C6'" "C4'" sing N N 171 LCG "C6'" "O2'" sing N N 172 LCG "C6'" "H6'1" sing N N 173 LCG "C6'" "H6'2" sing N N 174 LCG N9 C8 sing Y N 175 LCG N9 C4 sing Y N 176 LCG N9 "C1'" sing N N 177 LCG C8 N7 doub Y N 178 LCG C8 H8 sing N N 179 LCG C4 C5 doub Y N 180 LCG C4 N3 sing N N 181 LCG N7 C5 sing Y N 182 LCG C5 C6 sing N N 183 LCG C6 O6 doub N N 184 LCG C6 N1 sing N N 185 LCG "C2'" "C1'" sing N N 186 LCG "C2'" "O2'" sing N N 187 LCG "C2'" "H2'" sing N N 188 LCG "C4'" "O4'" sing N N 189 LCG "C1'" "O4'" sing N N 190 LCG "C1'" "H1'" sing N N 191 LCG C2 N1 sing N N 192 LCG C2 N2 sing N N 193 LCG C2 N3 doub N N 194 LCG N1 H1 sing N N 195 LCG OP2 HOP2 sing N N 196 LCG N2 H21 sing N N 197 LCG N2 H22 sing N N 198 LCG "O3'" "HO3'" sing N N 199 LCG OP3 HOP3 sing N N 200 U OP3 P sing N N 201 U OP3 HOP3 sing N N 202 U P OP1 doub N N 203 U P OP2 sing N N 204 U P "O5'" sing N N 205 U OP2 HOP2 sing N N 206 U "O5'" "C5'" sing N N 207 U "C5'" "C4'" sing N N 208 U "C5'" "H5'" sing N N 209 U "C5'" "H5''" sing N N 210 U "C4'" "O4'" sing N N 211 U "C4'" "C3'" sing N N 212 U "C4'" "H4'" sing N N 213 U "O4'" "C1'" sing N N 214 U "C3'" "O3'" sing N N 215 U "C3'" "C2'" sing N N 216 U "C3'" "H3'" sing N N 217 U "O3'" "HO3'" sing N N 218 U "C2'" "O2'" sing N N 219 U "C2'" "C1'" sing N N 220 U "C2'" "H2'" sing N N 221 U "O2'" "HO2'" sing N N 222 U "C1'" N1 sing N N 223 U "C1'" "H1'" sing N N 224 U N1 C2 sing N N 225 U N1 C6 sing N N 226 U C2 O2 doub N N 227 U C2 N3 sing N N 228 U N3 C4 sing N N 229 U N3 H3 sing N N 230 U C4 O4 doub N N 231 U C4 C5 sing N N 232 U C5 C6 doub N N 233 U C5 H5 sing N N 234 U C6 H6 sing N N 235 # _ndb_struct_conf_na.entry_id 5L00 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.162 -0.154 -0.095 -3.618 -14.794 -0.184 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.023 -0.082 0.105 3.538 -11.272 -3.916 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.151 -0.098 -0.017 8.769 -16.994 -0.300 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.088 -0.088 -0.162 3.509 -14.208 0.613 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.100 -0.102 -0.111 3.444 -12.114 2.452 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.029 -0.082 0.105 -4.197 -16.467 5.128 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.063 -0.141 0.006 -5.441 -10.243 -0.218 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.153 -0.139 -0.012 -5.966 -15.306 0.149 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.009 -0.127 0.032 -1.893 -8.539 -2.288 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.246 -0.177 -0.015 2.838 -10.080 -0.327 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 1 C LCG 4 1_555 D C 13 1_555 -0.156 -0.170 -0.064 -3.363 -14.974 -0.508 11 C_LCG4:C13_D C 4 ? D 13 ? 19 1 1 C A 5 1_555 D U 12 1_555 -0.017 -0.098 0.128 4.080 -10.790 -4.002 12 C_A5:U12_D C 5 ? D 12 ? 20 1 1 C C 6 1_555 D G 11 1_555 0.182 -0.099 -0.027 8.816 -16.974 -0.252 13 C_C6:G11_D C 6 ? D 11 ? 19 1 1 C U 7 1_555 D A 10 1_555 -0.087 -0.092 -0.148 3.184 -14.458 0.701 14 C_U7:A10_D C 7 ? D 10 ? 20 1 1 C U 8 1_555 D A 9 1_555 -0.116 -0.098 -0.121 3.308 -12.569 2.506 15 C_U8:A9_D C 8 ? D 9 ? 20 1 1 C A 9 1_555 D U 8 1_555 0.023 -0.079 0.057 -4.657 -16.284 5.134 16 C_A9:U8_D C 9 ? D 8 ? 20 1 1 C A 10 1_555 D U 7 1_555 0.068 -0.144 -0.032 -6.427 -10.458 -0.061 17 C_A10:U7_D C 10 ? D 7 ? 20 1 1 C G 11 1_555 D C 6 1_555 -0.154 -0.148 -0.043 -6.473 -16.055 -0.025 18 C_G11:C6_D C 11 ? D 6 ? 19 1 1 C U 12 1_555 D A 5 1_555 0.005 -0.125 0.035 -1.510 -9.118 -2.486 19 C_U12:A5_D C 12 ? D 5 ? 20 1 1 C C 13 1_555 D LCG 4 1_555 0.244 -0.172 -0.034 2.915 -10.312 -0.382 20 C_C13:LCG4_D C 13 ? D 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.263 -1.088 3.093 -1.751 3.081 32.447 -2.435 0.185 2.990 5.493 3.122 32.634 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.609 -1.579 3.132 1.931 3.959 32.771 -3.400 -0.765 2.956 6.978 -3.403 33.058 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.626 -1.769 3.309 -2.164 11.786 29.314 -5.251 0.781 2.470 22.157 4.067 31.619 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.038 -1.018 3.310 -2.245 9.205 31.049 -3.393 -0.315 2.893 16.714 4.077 32.429 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.597 -1.430 3.283 0.447 18.663 32.522 -4.443 -0.878 2.181 30.405 -0.728 37.374 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.566 -1.401 3.271 0.309 5.558 33.324 -3.280 1.023 3.000 9.609 -0.535 33.772 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.382 -1.707 3.260 2.390 7.276 29.570 -4.602 -0.278 2.792 13.963 -4.587 30.524 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.519 -1.475 3.196 -1.749 3.815 31.522 -3.359 0.642 3.025 6.984 3.202 31.793 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.482 -1.262 3.146 1.861 5.572 32.395 -3.117 -0.554 2.917 9.885 -3.301 32.910 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 C LCG 4 1_555 D C 13 1_555 C A 5 1_555 D U 12 1_555 -0.255 -1.113 3.075 -1.627 3.148 32.261 -2.503 0.191 2.965 5.643 2.917 32.450 10 CC_LCG4A5:U12C13_DD C 4 ? D 13 ? C 5 ? D 12 ? 1 C A 5 1_555 D U 12 1_555 C C 6 1_555 D G 11 1_555 0.612 -1.578 3.145 2.308 3.895 33.119 -3.350 -0.705 2.980 6.792 -4.026 33.418 11 CC_A5C6:G11U12_DD C 5 ? D 12 ? C 6 ? D 11 ? 1 C C 6 1_555 D G 11 1_555 C U 7 1_555 D A 10 1_555 -0.618 -1.773 3.330 -2.222 11.580 29.138 -5.292 0.756 2.500 21.919 4.205 31.386 12 CC_C6U7:A10G11_DD C 6 ? D 11 ? C 7 ? D 10 ? 1 C U 7 1_555 D A 10 1_555 C U 8 1_555 D A 9 1_555 -0.035 -1.027 3.291 -1.976 9.614 30.939 -3.467 -0.272 2.849 17.479 3.593 32.422 13 CC_U7U8:A9A10_DD C 7 ? D 10 ? C 8 ? D 9 ? 1 C U 8 1_555 D A 9 1_555 C A 9 1_555 D U 8 1_555 0.606 -1.415 3.304 0.691 18.382 32.449 -4.444 -0.867 2.226 30.072 -1.131 37.178 14 CC_U8A9:U8A9_DD C 8 ? D 9 ? C 9 ? D 8 ? 1 C A 9 1_555 D U 8 1_555 C A 10 1_555 D U 7 1_555 -0.550 -1.382 3.289 0.296 5.874 33.242 -3.305 0.994 3.003 10.169 -0.512 33.743 15 CC_A9A10:U7U8_DD C 9 ? D 8 ? C 10 ? D 7 ? 1 C A 10 1_555 D U 7 1_555 C G 11 1_555 D C 6 1_555 0.387 -1.692 3.259 2.465 7.440 29.647 -4.581 -0.275 2.784 14.229 -4.714 30.643 16 CC_A10G11:C6U7_DD C 10 ? D 7 ? C 11 ? D 6 ? 1 C G 11 1_555 D C 6 1_555 C U 12 1_555 D A 5 1_555 -0.524 -1.473 3.162 -1.966 3.907 31.641 -3.346 0.615 2.990 7.123 3.584 31.934 17 CC_G11U12:A5C6_DD C 11 ? D 6 ? C 12 ? D 5 ? 1 C U 12 1_555 D A 5 1_555 C C 13 1_555 D LCG 4 1_555 0.488 -1.268 3.165 2.045 5.565 32.127 -3.163 -0.534 2.935 9.949 -3.657 32.655 18 CC_U12C13:LCG4A5_DD C 12 ? D 5 ? C 13 ? D 4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" G 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4NFO _pdbx_initial_refinement_model.details ? #