HEADER TRANSCRIPTION 26-JUL-16 5L07 TITLE CRYSTAL STRUCTURE OF QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR FROM TITLE 2 YERSINIA ENTEROCOLITICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YENR, ERS137951_02004; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCG81 KEYWDS ALPHA-BETA STRUCTURE, PHEROMONE BINDING PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,R.JEDRZEJCZAK,S.C.WINANS,W.F.ANDERSON,A.JOACHIMIAK, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 11-DEC-19 5L07 1 REMARK REVDAT 3 20-SEP-17 5L07 1 REMARK REVDAT 2 08-FEB-17 5L07 1 AUTHOR REVDAT 1 07-SEP-16 5L07 0 JRNL AUTH Y.KIM,G.CHHOR,R.JEDRZEJCZAK,S.C.WINANS,A.JOACHIMIAK,CSGID JRNL TITL CRYSTAL STRUCTURE OF QUORUM-SENSING TRANSCRIPTIONAL JRNL TITL 2 ACTIVATOR FROM YERSINIA ENTEROCOLITICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2104: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 20559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6652 - 4.3809 0.95 2630 141 0.1615 0.1889 REMARK 3 2 4.3809 - 3.4783 0.97 2576 145 0.1553 0.1809 REMARK 3 3 3.4783 - 3.0389 0.98 2561 156 0.1799 0.2472 REMARK 3 4 3.0389 - 2.7612 0.98 2576 140 0.1830 0.2340 REMARK 3 5 2.7612 - 2.5633 0.95 2471 123 0.1815 0.2306 REMARK 3 6 2.5633 - 2.4122 0.93 2434 122 0.1927 0.2557 REMARK 3 7 2.4122 - 2.2915 0.89 2327 123 0.1896 0.2264 REMARK 3 8 2.2915 - 2.1917 0.75 1930 104 0.2003 0.2731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2796 REMARK 3 ANGLE : 0.892 3767 REMARK 3 CHIRALITY : 0.059 408 REMARK 3 PLANARITY : 0.005 479 REMARK 3 DIHEDRAL : 14.385 1680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1352 16.1071 29.0160 REMARK 3 T TENSOR REMARK 3 T11: 0.9280 T22: 0.4298 REMARK 3 T33: 0.3624 T12: -0.0023 REMARK 3 T13: 0.7254 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 1.1292 L22: 0.6037 REMARK 3 L33: 2.2022 L12: -0.0867 REMARK 3 L13: -0.7426 L23: -0.4191 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.4416 S13: 0.0216 REMARK 3 S21: -1.0898 S22: -0.1154 S23: -0.5374 REMARK 3 S31: -0.0303 S32: 0.3270 S33: -0.3438 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4550 7.0528 31.3116 REMARK 3 T TENSOR REMARK 3 T11: 0.8389 T22: 0.3051 REMARK 3 T33: 0.1475 T12: -0.0132 REMARK 3 T13: 0.0117 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 0.7437 L22: 1.3970 REMARK 3 L33: 1.6405 L12: 0.5062 REMARK 3 L13: 0.4631 L23: -0.5763 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.2879 S13: -0.1086 REMARK 3 S21: -1.7638 S22: 0.0961 S23: -0.0798 REMARK 3 S31: 0.1708 S32: -0.1359 S33: 0.0163 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8084 -4.6610 32.7449 REMARK 3 T TENSOR REMARK 3 T11: 0.9306 T22: 0.2593 REMARK 3 T33: 0.4280 T12: -0.0518 REMARK 3 T13: 0.0547 T23: -0.1006 REMARK 3 L TENSOR REMARK 3 L11: 0.5118 L22: 0.1358 REMARK 3 L33: 3.4678 L12: -0.2545 REMARK 3 L13: 0.4649 L23: -0.3125 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: 0.4377 S13: -0.4750 REMARK 3 S21: -1.4163 S22: 0.2445 S23: -0.2203 REMARK 3 S31: 0.6646 S32: -0.2338 S33: 0.5776 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1480 8.8229 37.9324 REMARK 3 T TENSOR REMARK 3 T11: 0.3295 T22: 0.1700 REMARK 3 T33: 0.1704 T12: -0.0196 REMARK 3 T13: 0.1395 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.2499 L22: 4.9046 REMARK 3 L33: 3.2143 L12: 0.9626 REMARK 3 L13: 0.3905 L23: 1.7695 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.2300 S13: -0.3070 REMARK 3 S21: -1.2514 S22: 0.0522 S23: -0.1753 REMARK 3 S31: 0.2839 S32: 0.2201 S33: 0.1510 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1158 -1.4818 43.7027 REMARK 3 T TENSOR REMARK 3 T11: 0.3984 T22: 0.3454 REMARK 3 T33: 0.6212 T12: 0.0756 REMARK 3 T13: 0.1975 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.9889 L22: 2.9000 REMARK 3 L33: 6.3205 L12: 1.6535 REMARK 3 L13: 3.0761 L23: 4.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.2044 S12: -0.1689 S13: -0.6863 REMARK 3 S21: 0.7062 S22: -0.0503 S23: 0.0055 REMARK 3 S31: 1.1783 S32: 0.1941 S33: 0.1244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2125 21.5437 35.7013 REMARK 3 T TENSOR REMARK 3 T11: 0.4346 T22: 0.1779 REMARK 3 T33: 0.3506 T12: -0.0090 REMARK 3 T13: 0.2332 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.3330 L22: 5.4200 REMARK 3 L33: 4.5738 L12: -0.3366 REMARK 3 L13: 1.3147 L23: -2.7527 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.4282 S13: 0.4783 REMARK 3 S21: -0.5248 S22: 0.1680 S23: -0.2396 REMARK 3 S31: -0.6773 S32: 0.3294 S33: -0.0325 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5724 14.9330 63.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.2440 T22: 0.2220 REMARK 3 T33: 0.1825 T12: -0.0402 REMARK 3 T13: 0.0474 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.1726 L22: 5.0053 REMARK 3 L33: 4.4460 L12: 0.6296 REMARK 3 L13: -1.4039 L23: 0.1186 REMARK 3 S TENSOR REMARK 3 S11: 0.2264 S12: -0.2973 S13: -0.2993 REMARK 3 S21: 0.5489 S22: -0.2618 S23: 0.3913 REMARK 3 S31: -0.1410 S32: -0.2645 S33: 0.1256 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3100 23.2919 59.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.2290 REMARK 3 T33: 0.1972 T12: -0.0268 REMARK 3 T13: 0.0539 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 9.1245 L22: 4.2084 REMARK 3 L33: 2.9190 L12: -1.3469 REMARK 3 L13: 1.7928 L23: -0.3504 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.0632 S13: 0.1377 REMARK 3 S21: 0.2208 S22: -0.3144 S23: 0.0788 REMARK 3 S31: 0.2858 S32: 0.1040 S33: 0.1565 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6074 30.7426 60.3878 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.2618 REMARK 3 T33: 0.3179 T12: 0.0326 REMARK 3 T13: 0.0020 T23: -0.0830 REMARK 3 L TENSOR REMARK 3 L11: 3.0578 L22: 2.5350 REMARK 3 L33: 2.1510 L12: -0.8292 REMARK 3 L13: 0.6164 L23: -0.6554 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.3787 S13: 0.4237 REMARK 3 S21: 0.2671 S22: -0.0797 S23: 0.1950 REMARK 3 S31: -0.2943 S32: -0.3782 S33: 0.1194 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9433 29.8227 48.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1707 REMARK 3 T33: 0.2299 T12: -0.0120 REMARK 3 T13: 0.0460 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.4686 L22: 5.1987 REMARK 3 L33: 4.3757 L12: -0.0365 REMARK 3 L13: 0.4539 L23: 2.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.1684 S13: 0.5124 REMARK 3 S21: -0.4027 S22: -0.0025 S23: -0.2075 REMARK 3 S31: -0.2880 S32: 0.1327 S33: 0.0826 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9873 39.1556 47.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.7645 T22: 0.7585 REMARK 3 T33: 0.9277 T12: -0.2467 REMARK 3 T13: -0.1249 T23: 0.3244 REMARK 3 L TENSOR REMARK 3 L11: 1.9383 L22: 8.1837 REMARK 3 L33: 0.1235 L12: -3.9743 REMARK 3 L13: 0.4676 L23: -0.9388 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.0069 S13: 0.4901 REMARK 3 S21: -0.2260 S22: 0.1113 S23: -0.4084 REMARK 3 S31: -0.7587 S32: 0.1053 S33: 0.0457 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1693 39.0041 62.2212 REMARK 3 T TENSOR REMARK 3 T11: 0.3735 T22: 0.5216 REMARK 3 T33: 0.6280 T12: -0.0398 REMARK 3 T13: -0.0664 T23: -0.1511 REMARK 3 L TENSOR REMARK 3 L11: 7.7669 L22: 9.1344 REMARK 3 L33: 4.5029 L12: -1.3626 REMARK 3 L13: 5.2802 L23: -3.5041 REMARK 3 S TENSOR REMARK 3 S11: -0.1602 S12: 0.0930 S13: 1.4439 REMARK 3 S21: 0.2029 S22: -0.0704 S23: -0.3784 REMARK 3 S31: -0.7577 S32: 0.4154 S33: 0.1065 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7504 24.9647 55.1488 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1556 REMARK 3 T33: 0.1574 T12: 0.0086 REMARK 3 T13: 0.0142 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 4.3082 L22: 3.7822 REMARK 3 L33: 2.8828 L12: 0.8318 REMARK 3 L13: 0.1790 L23: 0.9544 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.4088 S13: 0.0906 REMARK 3 S21: 0.2847 S22: -0.0737 S23: 0.0016 REMARK 3 S31: -0.0778 S32: -0.0384 S33: 0.0116 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7057 14.8461 55.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.1069 REMARK 3 T33: 0.1573 T12: 0.0281 REMARK 3 T13: -0.0244 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 4.8700 L22: 2.7413 REMARK 3 L33: 2.6950 L12: 0.6037 REMARK 3 L13: 0.0492 L23: 0.4446 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: 0.2211 S13: -0.3763 REMARK 3 S21: -0.0002 S22: 0.1184 S23: -0.0996 REMARK 3 S31: 0.1220 S32: -0.1193 S33: 0.0079 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 2.5 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.45350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.45350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.18550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.69950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.18550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.69950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.45350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.18550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.69950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.45350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.18550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.69950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.37100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.45350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ILE A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 SER A 92 REMARK 465 THR A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 465 ASN A 173 REMARK 465 PRO A 174 REMARK 465 LYS A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 ARG A 178 REMARK 465 ASP A 179 REMARK 465 MSE B 1 REMARK 465 ILE B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 THR B 93 REMARK 465 ASP B 94 REMARK 465 GLU B 170 REMARK 465 ASN B 171 REMARK 465 ARG B 172 REMARK 465 ASN B 173 REMARK 465 PRO B 174 REMARK 465 LYS B 175 REMARK 465 ILE B 176 REMARK 465 GLU B 177 REMARK 465 ARG B 178 REMARK 465 ASP B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 115 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 6 63.02 -110.72 REMARK 500 VAL B 107 -33.07 -132.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP52406 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5L09 RELATED DB: PDB DBREF1 5L07 A 1 179 UNP A0A0T9SEJ2_YEREN DBREF2 5L07 A A0A0T9SEJ2 1 179 DBREF1 5L07 B 1 179 UNP A0A0T9SEJ2_YEREN DBREF2 5L07 B A0A0T9SEJ2 1 179 SEQRES 1 A 179 MSE ILE ILE ASP TYR PHE ASP ASN GLU SER ILE ASN GLU SEQRES 2 A 179 ASP ILE LYS ASN TYR ILE GLN ARG ARG ILE LYS ALA TYR SEQRES 3 A 179 GLY ASP LEU ARG TYR SER TYR LEU VAL MSE ASN LYS LYS SEQRES 4 A 179 THR PRO LEU HIS PRO THR ILE ILE SER ASN TYR PRO LEU SEQRES 5 A 179 ASP TRP VAL LYS LYS TYR LYS LYS ASN SER TYR HIS LEU SEQRES 6 A 179 ILE ASP PRO VAL ILE LEU THR ALA LYS ASP LYS VAL ALA SEQRES 7 A 179 PRO PHE ALA TRP ASP ASP ASN SER VAL ILE ASN LYS LYS SEQRES 8 A 179 SER THR ASP SER ALA VAL PHE LYS LEU ALA ARG GLU TYR SEQRES 9 A 179 ASN ILE VAL ASN GLY TYR THR PHE VAL LEU HIS ASP ASN SEQRES 10 A 179 SER ASN ASN MSE ALA THR LEU ASN ILE SER ASN GLY SER SEQRES 11 A 179 ASP ASP SER ILE SER PHE ASP GLU SER ILE GLU ILE ASN SEQRES 12 A 179 LYS GLU LYS ILE GLN MSE LEU LEU ILE LEU THR HIS GLU SEQRES 13 A 179 LYS MSE LEU GLY LEU TYR GLN SER ASN SER ASP LYS ASN SEQRES 14 A 179 GLU ASN ARG ASN PRO LYS ILE GLU ARG ASP SEQRES 1 B 179 MSE ILE ILE ASP TYR PHE ASP ASN GLU SER ILE ASN GLU SEQRES 2 B 179 ASP ILE LYS ASN TYR ILE GLN ARG ARG ILE LYS ALA TYR SEQRES 3 B 179 GLY ASP LEU ARG TYR SER TYR LEU VAL MSE ASN LYS LYS SEQRES 4 B 179 THR PRO LEU HIS PRO THR ILE ILE SER ASN TYR PRO LEU SEQRES 5 B 179 ASP TRP VAL LYS LYS TYR LYS LYS ASN SER TYR HIS LEU SEQRES 6 B 179 ILE ASP PRO VAL ILE LEU THR ALA LYS ASP LYS VAL ALA SEQRES 7 B 179 PRO PHE ALA TRP ASP ASP ASN SER VAL ILE ASN LYS LYS SEQRES 8 B 179 SER THR ASP SER ALA VAL PHE LYS LEU ALA ARG GLU TYR SEQRES 9 B 179 ASN ILE VAL ASN GLY TYR THR PHE VAL LEU HIS ASP ASN SEQRES 10 B 179 SER ASN ASN MSE ALA THR LEU ASN ILE SER ASN GLY SER SEQRES 11 B 179 ASP ASP SER ILE SER PHE ASP GLU SER ILE GLU ILE ASN SEQRES 12 B 179 LYS GLU LYS ILE GLN MSE LEU LEU ILE LEU THR HIS GLU SEQRES 13 B 179 LYS MSE LEU GLY LEU TYR GLN SER ASN SER ASP LYS ASN SEQRES 14 B 179 GLU ASN ARG ASN PRO LYS ILE GLU ARG ASP MODRES 5L07 MSE A 36 MET MODIFIED RESIDUE MODRES 5L07 MSE A 121 MET MODIFIED RESIDUE MODRES 5L07 MSE A 149 MET MODIFIED RESIDUE MODRES 5L07 MSE A 158 MET MODIFIED RESIDUE MODRES 5L07 MSE B 36 MET MODIFIED RESIDUE MODRES 5L07 MSE B 121 MET MODIFIED RESIDUE MODRES 5L07 MSE B 149 MET MODIFIED RESIDUE MODRES 5L07 MSE B 158 MET MODIFIED RESIDUE HET MSE A 36 8 HET MSE A 121 8 HET MSE A 149 8 HET MSE A 158 8 HET MSE B 36 8 HET MSE B 121 8 HET MSE B 149 8 HET MSE B 158 8 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET ACY A 205 4 HET ACY A 206 4 HET EDO A 207 4 HET EDO B 201 4 HET ACY B 202 4 HET ACY B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET ACY B 208 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 ACY 5(C2 H4 O2) FORMUL 9 EDO 6(C2 H6 O2) FORMUL 18 HOH *75(H2 O) HELIX 1 AA1 ASN A 8 LYS A 24 1 17 HELIX 2 AA2 ALA A 25 GLY A 27 5 3 HELIX 3 AA3 PRO A 51 ASN A 61 1 11 HELIX 4 AA4 SER A 62 ILE A 66 5 5 HELIX 5 AA5 ASP A 67 LYS A 74 1 8 HELIX 6 AA6 ASP A 84 ASN A 89 1 6 HELIX 7 AA7 ALA A 96 TYR A 104 1 9 HELIX 8 AA8 ASP A 132 ASN A 143 1 12 HELIX 9 AA9 ASN A 143 ASN A 169 1 27 HELIX 10 AB1 ASN B 8 LYS B 24 1 17 HELIX 11 AB2 ALA B 25 GLY B 27 5 3 HELIX 12 AB3 PRO B 51 ASN B 61 1 11 HELIX 13 AB4 SER B 62 ILE B 66 5 5 HELIX 14 AB5 ASP B 67 LYS B 74 1 8 HELIX 15 AB6 ASP B 84 LYS B 90 1 7 HELIX 16 AB7 ALA B 96 TYR B 104 1 9 HELIX 17 AB8 ASP B 132 ASN B 169 1 38 SHEET 1 AA1 5 THR A 45 SER A 48 0 SHEET 2 AA1 5 LEU A 29 ASN A 37 -1 N TYR A 33 O ILE A 47 SHEET 3 AA1 5 ASN A 120 ASN A 128 -1 O ASN A 125 N SER A 32 SHEET 4 AA1 5 GLY A 109 HIS A 115 -1 N LEU A 114 O ALA A 122 SHEET 5 AA1 5 PHE A 80 ALA A 81 -1 N PHE A 80 O THR A 111 SHEET 1 AA2 5 THR B 45 SER B 48 0 SHEET 2 AA2 5 LEU B 29 ASN B 37 -1 N TYR B 33 O ILE B 47 SHEET 3 AA2 5 ASN B 120 ASN B 128 -1 O ASN B 125 N SER B 32 SHEET 4 AA2 5 GLY B 109 HIS B 115 -1 N LEU B 114 O ALA B 122 SHEET 5 AA2 5 PHE B 80 ALA B 81 -1 N PHE B 80 O THR B 111 LINK C VAL A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N ASN A 37 1555 1555 1.33 LINK C ASN A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ALA A 122 1555 1555 1.33 LINK C GLN A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N LEU A 150 1555 1555 1.33 LINK C LYS A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N LEU A 159 1555 1555 1.34 LINK C VAL B 35 N MSE B 36 1555 1555 1.32 LINK C MSE B 36 N ASN B 37 1555 1555 1.33 LINK C ASN B 120 N MSE B 121 1555 1555 1.32 LINK C MSE B 121 N ALA B 122 1555 1555 1.32 LINK C GLN B 148 N MSE B 149 1555 1555 1.34 LINK C MSE B 149 N LEU B 150 1555 1555 1.34 LINK C LYS B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N LEU B 159 1555 1555 1.33 SITE 1 AC1 4 GLU A 13 LYS A 16 ARG A 21 LYS A 24 SITE 1 AC2 5 ASP A 84 ASN A 85 SER A 86 HOH A 302 SITE 2 AC2 5 HOH A 308 SITE 1 AC3 5 ASN A 17 TYR A 18 ARG A 21 ARG A 22 SITE 2 AC3 5 HOH A 303 SITE 1 AC4 3 TYR A 18 ARG A 22 LYS B 60 SITE 1 AC5 4 SER A 32 ASP A 67 ILE A 70 ASN A 125 SITE 1 AC6 4 ILE A 142 ASN A 143 GLU A 145 LYS A 146 SITE 1 AC7 2 LYS A 16 LYS A 24 SITE 1 AC8 2 LYS A 74 ASN B 117 SITE 1 AC9 4 ASN A 108 ASN A 128 SER A 133 ARG B 21 SITE 1 AD1 6 SER B 32 TRP B 54 TYR B 58 ASP B 67 SITE 2 AD1 6 ILE B 70 ACY B 208 SITE 1 AD2 7 ASP A 75 LYS A 76 ASP B 116 ASN B 117 SITE 2 AD2 7 SER B 118 HOH B 301 HOH B 319 SITE 1 AD3 3 TYR B 18 ARG B 22 HOH B 333 SITE 1 AD4 4 ASN B 105 VAL B 107 ASN B 108 ASN B 128 SITE 1 AD5 7 THR B 40 LEU B 42 ASP B 83 ASN B 108 SITE 2 AD5 7 GLY B 109 ASP B 137 HOH B 314 SITE 1 AD6 4 ASP B 67 VAL B 69 PHE B 98 ACY B 203 CRYST1 64.371 123.399 106.907 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009354 0.00000