HEADER TRANSCRIPTION 26-JUL-16 5L09 TITLE CRYSTAL STRUCTURE OF QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR FROM TITLE 2 YERSINIA ENTEROCOLITICA IN COMPLEX WITH 3-OXO-N-[(3S)-2- TITLE 3 OXOTETRAHYDROFURAN-3-YL]HEXANAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA SEROTYPE O:8 / BIOTYPE SOURCE 3 1B (STRAIN NCTC 13174 / 8081); SOURCE 4 ORGANISM_TAXID: 393305; SOURCE 5 STRAIN: NCTC 13174 / 8081; SOURCE 6 GENE: YENR, YE1599; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG81 KEYWDS ALPHA-BETA STRUCTURE, PHEROMONE BINDING PROTEIN, TRANSCRIPTION, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,R.JEDRZEJCZAK,S.C.WINANS,W.F.ANDERSON,A.JOACHIMIAK, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 15-NOV-23 5L09 1 REMARK REVDAT 5 04-OCT-23 5L09 1 REMARK REVDAT 4 11-DEC-19 5L09 1 KEYWDS JRNL REVDAT 3 20-SEP-17 5L09 1 REMARK REVDAT 2 08-FEB-17 5L09 1 AUTHOR REVDAT 1 07-SEP-16 5L09 0 JRNL AUTH Y.KIM,G.CHHOR,R.JEDRZEJCZAK,S.C.WINANS,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF QUORUM-SENSING TRANSCRIPTIONAL JRNL TITL 2 ACTIVATOR FROM YERSINIA ENTEROCOLITICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2104: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 54350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9431 - 5.4034 0.98 2619 106 0.1810 0.1733 REMARK 3 2 5.4034 - 4.2922 1.00 2642 146 0.1408 0.1720 REMARK 3 3 4.2922 - 3.7506 1.00 2639 162 0.1449 0.1772 REMARK 3 4 3.7506 - 3.4081 1.00 2633 156 0.1541 0.1959 REMARK 3 5 3.4081 - 3.1640 1.00 2613 148 0.1642 0.1792 REMARK 3 6 3.1640 - 2.9776 1.00 2641 145 0.1704 0.2124 REMARK 3 7 2.9776 - 2.8286 0.99 2619 161 0.1669 0.2378 REMARK 3 8 2.8286 - 2.7055 0.99 2622 146 0.1660 0.2267 REMARK 3 9 2.7055 - 2.6014 0.99 2650 127 0.1714 0.1787 REMARK 3 10 2.6014 - 2.5117 0.99 2631 127 0.1790 0.2018 REMARK 3 11 2.5117 - 2.4332 0.99 2630 151 0.1853 0.2198 REMARK 3 12 2.4332 - 2.3637 0.99 2612 132 0.1925 0.2444 REMARK 3 13 2.3637 - 2.3014 0.99 2624 137 0.1757 0.2255 REMARK 3 14 2.3014 - 2.2453 0.99 2595 154 0.1848 0.2397 REMARK 3 15 2.2453 - 2.1943 0.99 2635 119 0.1876 0.2174 REMARK 3 16 2.1943 - 2.1476 0.98 2584 147 0.1943 0.2411 REMARK 3 17 2.1476 - 2.1046 0.96 2546 136 0.1868 0.2518 REMARK 3 18 2.1046 - 2.0649 0.93 2452 137 0.1976 0.2082 REMARK 3 19 2.0649 - 2.0281 0.90 2378 136 0.1978 0.2987 REMARK 3 20 2.0281 - 1.9937 0.84 2211 101 0.2117 0.2661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2858 REMARK 3 ANGLE : 0.997 3851 REMARK 3 CHIRALITY : 0.055 420 REMARK 3 PLANARITY : 0.005 489 REMARK 3 DIHEDRAL : 14.450 1723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7100 14.0482 -9.3495 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1767 REMARK 3 T33: 0.1652 T12: 0.0242 REMARK 3 T13: 0.0110 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.0105 REMARK 3 L33: 0.0043 L12: 0.0028 REMARK 3 L13: -0.0045 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0243 S13: -0.0049 REMARK 3 S21: -0.1044 S22: -0.0813 S23: -0.0329 REMARK 3 S31: 0.0196 S32: 0.0534 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3669 25.9243 -2.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0992 REMARK 3 T33: 0.1314 T12: 0.0071 REMARK 3 T13: 0.0013 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.0305 L22: 0.0945 REMARK 3 L33: 0.0707 L12: -0.0052 REMARK 3 L13: 0.0011 L23: -0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0879 S13: 0.0897 REMARK 3 S21: -0.0091 S22: -0.0368 S23: 0.0243 REMARK 3 S31: -0.0197 S32: 0.0340 S33: -0.0070 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8416 16.0530 24.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.4055 T22: 0.3159 REMARK 3 T33: 0.2397 T12: 0.0351 REMARK 3 T13: 0.3558 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.0062 L22: 0.0087 REMARK 3 L33: 0.0059 L12: 0.0054 REMARK 3 L13: -0.0015 L23: 0.0085 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0108 S13: 0.0029 REMARK 3 S21: 0.0630 S22: 0.0345 S23: 0.0296 REMARK 3 S31: -0.0294 S32: -0.0169 S33: 0.0110 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5777 8.5151 26.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.6132 T22: 0.1784 REMARK 3 T33: -0.0384 T12: -0.0577 REMARK 3 T13: 0.1194 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.0083 REMARK 3 L33: 0.0026 L12: 0.0023 REMARK 3 L13: -0.0011 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.0454 S13: 0.0071 REMARK 3 S21: 0.1262 S22: -0.0007 S23: -0.0084 REMARK 3 S31: 0.0231 S32: -0.0128 S33: -0.0258 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5934 1.8167 15.1046 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1257 REMARK 3 T33: 0.0929 T12: -0.0059 REMARK 3 T13: -0.0382 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0223 REMARK 3 L33: 0.0360 L12: 0.0036 REMARK 3 L13: -0.0030 L23: -0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.0712 S13: 0.0045 REMARK 3 S21: 0.1697 S22: -0.0260 S23: -0.0702 REMARK 3 S31: -0.0090 S32: 0.0202 S33: -0.0335 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9354 -5.7053 25.0618 REMARK 3 T TENSOR REMARK 3 T11: 0.4581 T22: 0.1978 REMARK 3 T33: 0.1528 T12: -0.0449 REMARK 3 T13: 0.0126 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0003 REMARK 3 L33: 0.0014 L12: -0.0002 REMARK 3 L13: -0.0013 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0096 S13: -0.0181 REMARK 3 S21: 0.0235 S22: 0.0167 S23: -0.0024 REMARK 3 S31: 0.0021 S32: -0.0015 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9068 9.2134 15.9015 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.1223 REMARK 3 T33: 0.1128 T12: 0.0045 REMARK 3 T13: 0.0356 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.0130 L22: 0.0075 REMARK 3 L33: 0.0185 L12: -0.0086 REMARK 3 L13: 0.0142 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.0076 S13: 0.0012 REMARK 3 S21: 0.0874 S22: -0.0494 S23: -0.0236 REMARK 3 S31: 0.0079 S32: 0.0328 S33: -0.0136 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0944 -2.6817 12.7815 REMARK 3 T TENSOR REMARK 3 T11: 0.2783 T22: 0.2190 REMARK 3 T33: 0.3061 T12: -0.0609 REMARK 3 T13: 0.0493 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.0028 L22: 0.0014 REMARK 3 L33: 0.0004 L12: 0.0012 REMARK 3 L13: -0.0009 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.0018 S13: 0.0161 REMARK 3 S21: 0.0154 S22: 0.0087 S23: 0.0089 REMARK 3 S31: 0.0320 S32: 0.0036 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8273 20.9753 17.4862 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.0906 REMARK 3 T33: 0.1505 T12: 0.0201 REMARK 3 T13: 0.1885 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0206 REMARK 3 L33: 0.0101 L12: -0.0051 REMARK 3 L13: 0.0047 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0396 S13: 0.0461 REMARK 3 S21: 0.0861 S22: 0.0365 S23: 0.0417 REMARK 3 S31: -0.0947 S32: -0.0069 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5L07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 2.5 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.80150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.80150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.93900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.38750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.93900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.38750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.80150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.93900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.38750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.80150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.93900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.38750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 92 REMARK 465 THR A 93 REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 ASP A 167 REMARK 465 LYS A 168 REMARK 465 ASN A 169 REMARK 465 GLU A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 465 ASN A 173 REMARK 465 PRO A 174 REMARK 465 LYS A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 ARG A 178 REMARK 465 ASP A 179 REMARK 465 MSE B 1 REMARK 465 ILE B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 169 REMARK 465 GLU B 170 REMARK 465 ASN B 171 REMARK 465 ARG B 172 REMARK 465 ASN B 173 REMARK 465 PRO B 174 REMARK 465 LYS B 175 REMARK 465 ILE B 176 REMARK 465 GLU B 177 REMARK 465 ARG B 178 REMARK 465 ASP B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 SO4 B 203 O2 EDO B 207 1.27 REMARK 500 NZ LYS A 76 O HOH A 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 371 O HOH B 344 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 107 -54.61 -127.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 482 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 482 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP52406 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5L07 RELATED DB: PDB DBREF 5L09 A 1 179 UNP A1JMX7 A1JMX7_YERE8 1 179 DBREF 5L09 B 1 179 UNP A1JMX7 A1JMX7_YERE8 1 179 SEQRES 1 A 179 MSE ILE ILE ASP TYR PHE ASP ASN GLU SER ILE ASN GLU SEQRES 2 A 179 ASP ILE LYS ASN TYR ILE GLN ARG ARG ILE LYS ALA TYR SEQRES 3 A 179 GLY ASP LEU ARG TYR SER TYR LEU VAL MSE ASN LYS LYS SEQRES 4 A 179 THR PRO LEU HIS PRO THR ILE ILE SER ASN TYR PRO LEU SEQRES 5 A 179 ASP TRP VAL LYS LYS TYR LYS LYS ASN SER TYR HIS LEU SEQRES 6 A 179 ILE ASP PRO VAL ILE LEU THR ALA LYS ASP LYS VAL ALA SEQRES 7 A 179 PRO PHE ALA TRP ASP ASP ASN SER VAL ILE ASN LYS LYS SEQRES 8 A 179 SER THR ASP SER ALA VAL PHE LYS LEU ALA ARG GLU TYR SEQRES 9 A 179 ASN ILE VAL ASN GLY TYR THR PHE VAL LEU HIS ASP ASN SEQRES 10 A 179 SER ASN ASN MSE ALA THR LEU ASN ILE SER ASN GLY SER SEQRES 11 A 179 ASP ASP SER ILE SER PHE ASP GLU SER ILE GLU ILE ASN SEQRES 12 A 179 LYS GLU LYS ILE GLN MSE LEU LEU ILE LEU THR HIS GLU SEQRES 13 A 179 LYS MSE LEU GLY LEU TYR GLN SER ASN SER ASP LYS ASN SEQRES 14 A 179 GLU ASN ARG ASN PRO LYS ILE GLU ARG ASP SEQRES 1 B 179 MSE ILE ILE ASP TYR PHE ASP ASN GLU SER ILE ASN GLU SEQRES 2 B 179 ASP ILE LYS ASN TYR ILE GLN ARG ARG ILE LYS ALA TYR SEQRES 3 B 179 GLY ASP LEU ARG TYR SER TYR LEU VAL MSE ASN LYS LYS SEQRES 4 B 179 THR PRO LEU HIS PRO THR ILE ILE SER ASN TYR PRO LEU SEQRES 5 B 179 ASP TRP VAL LYS LYS TYR LYS LYS ASN SER TYR HIS LEU SEQRES 6 B 179 ILE ASP PRO VAL ILE LEU THR ALA LYS ASP LYS VAL ALA SEQRES 7 B 179 PRO PHE ALA TRP ASP ASP ASN SER VAL ILE ASN LYS LYS SEQRES 8 B 179 SER THR ASP SER ALA VAL PHE LYS LEU ALA ARG GLU TYR SEQRES 9 B 179 ASN ILE VAL ASN GLY TYR THR PHE VAL LEU HIS ASP ASN SEQRES 10 B 179 SER ASN ASN MSE ALA THR LEU ASN ILE SER ASN GLY SER SEQRES 11 B 179 ASP ASP SER ILE SER PHE ASP GLU SER ILE GLU ILE ASN SEQRES 12 B 179 LYS GLU LYS ILE GLN MSE LEU LEU ILE LEU THR HIS GLU SEQRES 13 B 179 LYS MSE LEU GLY LEU TYR GLN SER ASN SER ASP LYS ASN SEQRES 14 B 179 GLU ASN ARG ASN PRO LYS ILE GLU ARG ASP MODRES 5L09 MSE A 36 MET MODIFIED RESIDUE MODRES 5L09 MSE A 121 MET MODIFIED RESIDUE MODRES 5L09 MSE A 149 MET MODIFIED RESIDUE MODRES 5L09 MSE A 158 MET MODIFIED RESIDUE MODRES 5L09 MSE B 36 MET MODIFIED RESIDUE MODRES 5L09 MSE B 121 MET MODIFIED RESIDUE MODRES 5L09 MSE B 149 MET MODIFIED RESIDUE MODRES 5L09 MSE B 158 MET MODIFIED RESIDUE HET MSE A 36 8 HET MSE A 121 8 HET MSE A 149 8 HET MSE A 158 8 HET MSE B 36 8 HET MSE B 121 8 HET MSE B 149 8 HET MSE B 158 8 HET 482 A 201 15 HET SO4 A 202 5 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET ACY A 206 4 HET ACY A 207 4 HET ACY B 201 4 HET 482 B 202 15 HET SO4 B 203 5 HET SO4 B 204 5 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET ACY B 208 4 HET EDO B 209 4 HET EDO B 210 4 HETNAM MSE SELENOMETHIONINE HETNAM 482 3-OXO-N-[(3S)-2-OXOTETRAHYDROFURAN-3-YL]HEXANAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 482 2(C10 H15 N O4) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 8 ACY 4(C2 H4 O2) FORMUL 20 HOH *136(H2 O) HELIX 1 AA1 ASN A 8 LYS A 24 1 17 HELIX 2 AA2 ALA A 25 GLY A 27 5 3 HELIX 3 AA3 PRO A 51 ASN A 61 1 11 HELIX 4 AA4 SER A 62 ILE A 66 5 5 HELIX 5 AA5 ASP A 67 LYS A 74 1 8 HELIX 6 AA6 ASP A 84 LYS A 91 1 8 HELIX 7 AA7 SER A 95 GLU A 103 1 9 HELIX 8 AA8 ASP A 132 GLN A 163 1 32 HELIX 9 AA9 ASN B 8 LYS B 24 1 17 HELIX 10 AB1 ALA B 25 GLY B 27 5 3 HELIX 11 AB2 PRO B 51 ASN B 61 1 11 HELIX 12 AB3 SER B 62 ILE B 66 5 5 HELIX 13 AB4 ASP B 67 LYS B 74 1 8 HELIX 14 AB5 ASP B 84 ASP B 94 1 11 HELIX 15 AB6 SER B 95 ARG B 102 1 8 HELIX 16 AB7 GLU B 103 ASN B 105 5 3 HELIX 17 AB8 ASP B 132 ASN B 143 1 12 HELIX 18 AB9 ASN B 143 LYS B 168 1 26 SHEET 1 AA1 5 THR A 45 SER A 48 0 SHEET 2 AA1 5 ARG A 30 ASN A 37 -1 N TYR A 33 O ILE A 47 SHEET 3 AA1 5 ASN A 120 SER A 127 -1 O SER A 127 N ARG A 30 SHEET 4 AA1 5 GLY A 109 HIS A 115 -1 N LEU A 114 O ALA A 122 SHEET 5 AA1 5 PHE A 80 ALA A 81 -1 N PHE A 80 O THR A 111 SHEET 1 AA2 5 THR B 45 SER B 48 0 SHEET 2 AA2 5 ARG B 30 ASN B 37 -1 N TYR B 33 O ILE B 47 SHEET 3 AA2 5 ASN B 120 SER B 127 -1 O ASN B 125 N SER B 32 SHEET 4 AA2 5 GLY B 109 HIS B 115 -1 N LEU B 114 O ALA B 122 SHEET 5 AA2 5 PHE B 80 ALA B 81 -1 N PHE B 80 O THR B 111 LINK C VAL A 35 N MSE A 36 1555 1555 1.32 LINK C MSE A 36 N ASN A 37 1555 1555 1.33 LINK C ASN A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ALA A 122 1555 1555 1.33 LINK C GLN A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N LEU A 150 1555 1555 1.34 LINK C LYS A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N LEU A 159 1555 1555 1.34 LINK C VAL B 35 N MSE B 36 1555 1555 1.32 LINK C MSE B 36 N ASN B 37 1555 1555 1.32 LINK C ASN B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N ALA B 122 1555 1555 1.32 LINK C GLN B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N LEU B 150 1555 1555 1.34 LINK C LYS B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N LEU B 159 1555 1555 1.33 SITE 1 AC1 11 SER A 32 LEU A 34 TYR A 50 TRP A 54 SITE 2 AC1 11 TYR A 58 ASP A 67 VAL A 69 PHE A 98 SITE 3 AC1 11 ALA A 101 ILE A 106 ASN A 125 SITE 1 AC2 5 ARG A 30 ASN A 105 GLY A 129 SER A 130 SITE 2 AC2 5 HOH A 334 SITE 1 AC3 4 TYR A 18 ARG A 22 HOH A 336 EDO B 207 SITE 1 AC4 6 ASN A 117 SER A 118 LEU A 159 HOH A 308 SITE 2 AC4 6 ASP B 75 LYS B 76 SITE 1 AC5 4 LYS A 146 LEU A 150 HOH A 313 HOH A 322 SITE 1 AC6 1 ARG A 30 SITE 1 AC7 3 LYS A 57 LYS A 60 ASN A 61 SITE 1 AC8 3 ASN A 117 LYS B 38 LYS B 74 SITE 1 AC9 11 SER B 32 LEU B 34 TYR B 50 TRP B 54 SITE 2 AC9 11 TYR B 58 ASP B 67 VAL B 69 PHE B 98 SITE 3 AC9 11 ALA B 101 ILE B 106 ASN B 125 SITE 1 AD1 6 ASP B 84 ASN B 85 SER B 86 EDO B 207 SITE 2 AD1 6 HOH B 303 HOH B 308 SITE 1 AD2 3 ARG B 30 GLY B 129 SER B 130 SITE 1 AD3 2 LYS A 60 TYR B 18 SITE 1 AD4 3 TYR B 18 ARG B 21 ARG B 22 SITE 1 AD5 7 LYS A 157 EDO A 203 HOH A 336 ASP B 84 SITE 2 AD5 7 ASN B 85 SO4 B 203 HOH B 306 SITE 1 AD6 4 LYS B 16 GLN B 20 ASN B 49 EDO B 209 SITE 1 AD7 4 GLU B 13 LYS B 16 ARG B 21 ACY B 208 SITE 1 AD8 3 ARG B 30 PRO B 51 LEU B 52 CRYST1 63.878 122.775 107.603 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009293 0.00000