HEADER TRANSFERASE 28-JUL-16 5L0S TITLE HUMAN POGLUT1 IN COMPLEX WITH FACTOR VII EGF1 AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-GLUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAP10-LIKE 46 KDA PROTEIN,HCLP46,KTEL MOTIF-CONTAINING COMPND 5 PROTEIN 1,MYELODYSPLASTIC SYNDROMES RELATIVE PROTEIN,O- COMPND 6 GLUCOSYLTRANSFERASE RUMI HOMOLOG,HRUMI,PROTEIN O-XYLOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.-,2.4.2.26; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR VII; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: PROCONVERTIN,SERUM PROTHROMBIN CONVERSION ACCELERATOR,SPCA; COMPND 13 EC: 3.4.21.21; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGLUT1, C3ORF9, CLP46, KTELC1, MDSRP, MDS010, UNQ490/PRO1006; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: F7; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS TRANSFERASE GLYCOSYLTRANSFERASE GT-B GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 24-MAR-21 5L0S 1 SOURCE HETSYN REVDAT 3 29-JUL-20 5L0S 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 30-AUG-17 5L0S 1 JRNL REVDAT 1 09-AUG-17 5L0S 0 JRNL AUTH Z.LI,M.FISCHER,M.SATKUNARAJAH,D.ZHOU,S.G.WITHERS,J.M.RINI JRNL TITL STRUCTURAL BASIS OF NOTCH O-GLUCOSYLATION AND O-XYLOSYLATION JRNL TITL 2 BY MAMMALIAN PROTEIN-O-GLUCOSYLTRANSFERASE 1 (POGLUT1). JRNL REF NAT COMMUN V. 8 185 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28775322 JRNL DOI 10.1038/S41467-017-00255-7 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 79612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0215 - 4.4016 0.98 2879 152 0.1657 0.1858 REMARK 3 2 4.4016 - 3.4942 0.99 2764 145 0.1282 0.1470 REMARK 3 3 3.4942 - 3.0526 1.00 2775 147 0.1320 0.1444 REMARK 3 4 3.0526 - 2.7736 1.00 2744 144 0.1306 0.1387 REMARK 3 5 2.7736 - 2.5748 1.00 2751 145 0.1273 0.1448 REMARK 3 6 2.5748 - 2.4230 1.00 2725 143 0.1260 0.1463 REMARK 3 7 2.4230 - 2.3017 1.00 2738 144 0.1211 0.1573 REMARK 3 8 2.3017 - 2.2015 1.00 2727 144 0.1213 0.1713 REMARK 3 9 2.2015 - 2.1167 1.00 2707 142 0.1181 0.1263 REMARK 3 10 2.1167 - 2.0437 1.00 2732 144 0.1183 0.1432 REMARK 3 11 2.0437 - 1.9798 1.00 2695 142 0.1172 0.1385 REMARK 3 12 1.9798 - 1.9232 1.00 2714 143 0.1199 0.1394 REMARK 3 13 1.9232 - 1.8726 1.00 2701 142 0.1220 0.1570 REMARK 3 14 1.8726 - 1.8269 1.00 2711 143 0.1264 0.1504 REMARK 3 15 1.8269 - 1.7853 1.00 2716 143 0.1327 0.1465 REMARK 3 16 1.7853 - 1.7473 1.00 2681 141 0.1393 0.1602 REMARK 3 17 1.7473 - 1.7124 1.00 2690 141 0.1427 0.1750 REMARK 3 18 1.7124 - 1.6801 1.00 2696 142 0.1437 0.1477 REMARK 3 19 1.6801 - 1.6501 1.00 2719 143 0.1519 0.1721 REMARK 3 20 1.6501 - 1.6221 1.00 2674 141 0.1498 0.1719 REMARK 3 21 1.6221 - 1.5959 1.00 2694 142 0.1586 0.1833 REMARK 3 22 1.5959 - 1.5714 1.00 2659 140 0.1799 0.1848 REMARK 3 23 1.5714 - 1.5483 1.00 2700 142 0.1846 0.1957 REMARK 3 24 1.5483 - 1.5265 0.99 2664 140 0.1989 0.2448 REMARK 3 25 1.5265 - 1.5058 1.00 2672 141 0.2122 0.2266 REMARK 3 26 1.5058 - 1.4863 0.99 2679 141 0.2470 0.2333 REMARK 3 27 1.4863 - 1.4677 0.96 2569 135 0.2604 0.2743 REMARK 3 28 1.4677 - 1.4500 0.92 2455 129 0.2809 0.2743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3484 REMARK 3 ANGLE : 1.037 4741 REMARK 3 CHIRALITY : 0.077 487 REMARK 3 PLANARITY : 0.007 606 REMARK 3 DIHEDRAL : 16.238 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2492 30.6788 34.7269 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2903 REMARK 3 T33: 0.1362 T12: -0.0144 REMARK 3 T13: 0.0200 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.0889 L22: 1.0140 REMARK 3 L33: 1.8110 L12: -0.7220 REMARK 3 L13: 0.8707 L23: -0.5216 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: -0.3268 S13: -0.0096 REMARK 3 S21: 0.0819 S22: 0.1782 S23: 0.1347 REMARK 3 S31: -0.0321 S32: -0.4829 S33: -0.1185 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1478 14.1425 30.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2201 REMARK 3 T33: 0.3069 T12: 0.0813 REMARK 3 T13: -0.0638 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.1986 L22: 2.0660 REMARK 3 L33: 3.9819 L12: -0.7493 REMARK 3 L13: 0.2786 L23: -0.6038 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0854 S13: -0.3589 REMARK 3 S21: 0.0604 S22: -0.0368 S23: -0.1449 REMARK 3 S31: 0.4293 S32: 0.3246 S33: -0.0474 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8822 22.0327 27.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1565 REMARK 3 T33: 0.1588 T12: 0.0249 REMARK 3 T13: -0.0245 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.4956 L22: 2.1973 REMARK 3 L33: 2.8180 L12: 0.1530 REMARK 3 L13: 1.0860 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0756 S13: -0.1305 REMARK 3 S21: 0.0528 S22: -0.0018 S23: -0.1816 REMARK 3 S31: 0.0326 S32: 0.2421 S33: -0.0190 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7152 27.4775 21.3237 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1116 REMARK 3 T33: 0.1243 T12: -0.0046 REMARK 3 T13: -0.0088 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.3764 L22: 1.6933 REMARK 3 L33: 1.5576 L12: -0.4338 REMARK 3 L13: 0.4165 L23: -0.5711 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.0356 S13: -0.0403 REMARK 3 S21: -0.0047 S22: 0.0066 S23: -0.0565 REMARK 3 S31: -0.0131 S32: 0.1154 S33: -0.0293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2093 31.8378 8.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.1839 REMARK 3 T33: 0.1315 T12: 0.0004 REMARK 3 T13: -0.0094 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.3868 L22: 2.3400 REMARK 3 L33: 2.3828 L12: -0.4198 REMARK 3 L13: 0.4930 L23: 0.3066 REMARK 3 S TENSOR REMARK 3 S11: 0.1195 S12: 0.1968 S13: -0.0611 REMARK 3 S21: -0.1537 S22: -0.0257 S23: 0.1844 REMARK 3 S31: -0.0187 S32: -0.1760 S33: -0.0950 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6140 24.4993 2.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.2333 REMARK 3 T33: 0.1625 T12: 0.0141 REMARK 3 T13: -0.0499 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.6060 L22: 1.0390 REMARK 3 L33: 3.0143 L12: 1.4862 REMARK 3 L13: -0.2465 L23: 0.6117 REMARK 3 S TENSOR REMARK 3 S11: 0.1969 S12: 0.7825 S13: -0.4751 REMARK 3 S21: -0.3282 S22: -0.1359 S23: 0.0847 REMARK 3 S31: 0.2186 S32: 0.0461 S33: -0.0674 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3910 31.5169 9.9377 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1451 REMARK 3 T33: 0.1058 T12: -0.0003 REMARK 3 T13: -0.0122 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6142 L22: 1.6156 REMARK 3 L33: 1.8165 L12: -0.0610 REMARK 3 L13: 0.1687 L23: -0.0105 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.1746 S13: -0.0325 REMARK 3 S21: -0.1750 S22: 0.0459 S23: 0.0922 REMARK 3 S31: -0.0376 S32: -0.0273 S33: -0.0900 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9127 30.5712 21.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1594 REMARK 3 T33: 0.1405 T12: 0.0011 REMARK 3 T13: -0.0006 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.1683 L22: 1.0583 REMARK 3 L33: 1.5762 L12: -0.3501 REMARK 3 L13: 0.3427 L23: -0.5797 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.0450 S13: -0.1053 REMARK 3 S21: 0.0289 S22: 0.1158 S23: 0.1417 REMARK 3 S31: -0.0189 S32: -0.2589 S33: -0.1221 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8149 42.0445 25.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.1579 REMARK 3 T33: 0.1966 T12: 0.0550 REMARK 3 T13: 0.0237 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 9.2715 L22: 1.1922 REMARK 3 L33: 3.7791 L12: -0.6888 REMARK 3 L13: 3.7366 L23: -0.5393 REMARK 3 S TENSOR REMARK 3 S11: -0.2391 S12: -0.2356 S13: 0.5761 REMARK 3 S21: 0.2326 S22: 0.1367 S23: 0.1234 REMARK 3 S31: -0.5022 S32: -0.2943 S33: 0.1313 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0960 23.9078 34.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.2248 REMARK 3 T33: 0.2092 T12: 0.0132 REMARK 3 T13: -0.0619 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.4021 L22: 1.9414 REMARK 3 L33: 1.8238 L12: -0.5407 REMARK 3 L13: 0.2108 L23: -0.2414 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: -0.2350 S13: -0.0765 REMARK 3 S21: 0.2643 S22: 0.0323 S23: -0.4091 REMARK 3 S31: 0.0736 S32: 0.3734 S33: -0.0190 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1632 18.1502 7.2699 REMARK 3 T TENSOR REMARK 3 T11: 0.3213 T22: 0.2602 REMARK 3 T33: 0.2955 T12: 0.0474 REMARK 3 T13: 0.0126 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 4.6822 L22: 4.2242 REMARK 3 L33: 5.9624 L12: -2.3767 REMARK 3 L13: -1.0800 L23: -0.1951 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: 0.1780 S13: -0.6650 REMARK 3 S21: -0.1245 S22: -0.1435 S23: -0.0915 REMARK 3 S31: 0.7727 S32: 0.1932 S33: 0.1376 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7351 26.6231 4.5462 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.4520 REMARK 3 T33: 0.5486 T12: 0.0152 REMARK 3 T13: 0.1414 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 4.6494 L22: 2.5072 REMARK 3 L33: 6.4586 L12: 2.4488 REMARK 3 L13: 0.5059 L23: 0.9138 REMARK 3 S TENSOR REMARK 3 S11: 0.2056 S12: 0.3222 S13: 0.2486 REMARK 3 S21: -0.5250 S22: 0.2964 S23: -1.2609 REMARK 3 S31: -0.1228 S32: 1.2457 S33: -0.1939 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 MME, 50 MM MES PH 6.5, 2MM REMARK 280 CACL2, 250MM NACL, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 ASP B 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 30 N CA CB OG REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 GLN B 66 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1119 O HOH A 1133 2.02 REMARK 500 O HOH A 1210 O HOH A 1394 2.02 REMARK 500 O HOH A 1300 O HOH A 1359 2.04 REMARK 500 O HOH A 1296 O HOH A 1346 2.04 REMARK 500 O HOH A 1232 O HOH A 1339 2.10 REMARK 500 O HOH A 1346 O HOH A 1347 2.10 REMARK 500 O HOH B 217 O HOH B 229 2.12 REMARK 500 O HOH A 1206 O HOH A 1425 2.12 REMARK 500 O HOH B 221 O HOH B 230 2.17 REMARK 500 O HOH A 1323 O HOH A 1390 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1345 O HOH A 1363 4456 2.06 REMARK 500 O HOH A 1172 O HOH A 1264 2564 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 275 -142.11 -127.30 REMARK 500 ASP A 295 22.97 -143.85 REMARK 500 TRP A 308 -25.57 73.15 REMARK 500 SER B 53 64.60 61.22 REMARK 500 SER B 67 -156.67 -125.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 47 O REMARK 620 2 ASP B 63 OD1 91.1 REMARK 620 3 ASP B 63 OD2 74.5 44.3 REMARK 620 4 SER B 67 O 146.5 64.8 99.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L0R RELATED DB: PDB REMARK 900 RELATED ID: 5L0T RELATED DB: PDB REMARK 900 RELATED ID: 5L0U RELATED DB: PDB REMARK 900 RELATED ID: 5L0V RELATED DB: PDB DBREF 5L0S A 29 385 UNP Q8NBL1 PGLT1_HUMAN 29 385 DBREF 5L0S B 45 85 UNP P08709 FA7_HUMAN 105 145 SEQADV 5L0S GLY B 44 UNP P08709 EXPRESSION TAG SEQRES 1 A 357 GLY SER LYS TRP LYS VAL PHE ILE ASP GLN ILE ASN ARG SEQRES 2 A 357 SER LEU GLU ASN TYR GLU PRO CYS SER SER GLN ASN CYS SEQRES 3 A 357 SER CYS TYR HIS GLY VAL ILE GLU GLU ASP LEU THR PRO SEQRES 4 A 357 PHE ARG GLY GLY ILE SER ARG LYS MET MET ALA GLU VAL SEQRES 5 A 357 VAL ARG ARG LYS LEU GLY THR HIS TYR GLN ILE THR LYS SEQRES 6 A 357 ASN ARG LEU TYR ARG GLU ASN ASP CYS MET PHE PRO SER SEQRES 7 A 357 ARG CYS SER GLY VAL GLU HIS PHE ILE LEU GLU VAL ILE SEQRES 8 A 357 GLY ARG LEU PRO ASP MET GLU MET VAL ILE ASN VAL ARG SEQRES 9 A 357 ASP TYR PRO GLN VAL PRO LYS TRP MET GLU PRO ALA ILE SEQRES 10 A 357 PRO VAL PHE SER PHE SER LYS THR SER GLU TYR HIS ASP SEQRES 11 A 357 ILE MET TYR PRO ALA TRP THR PHE TRP GLU GLY GLY PRO SEQRES 12 A 357 ALA VAL TRP PRO ILE TYR PRO THR GLY LEU GLY ARG TRP SEQRES 13 A 357 ASP LEU PHE ARG GLU ASP LEU VAL ARG SER ALA ALA GLN SEQRES 14 A 357 TRP PRO TRP LYS LYS LYS ASN SER THR ALA TYR PHE ARG SEQRES 15 A 357 GLY SER ARG THR SER PRO GLU ARG ASP PRO LEU ILE LEU SEQRES 16 A 357 LEU SER ARG LYS ASN PRO LYS LEU VAL ASP ALA GLU TYR SEQRES 17 A 357 THR LYS ASN GLN ALA TRP LYS SER MET LYS ASP THR LEU SEQRES 18 A 357 GLY LYS PRO ALA ALA LYS ASP VAL HIS LEU VAL ASP HIS SEQRES 19 A 357 CYS LYS TYR LYS TYR LEU PHE ASN PHE ARG GLY VAL ALA SEQRES 20 A 357 ALA SER PHE ARG PHE LYS HIS LEU PHE LEU CYS GLY SER SEQRES 21 A 357 LEU VAL PHE HIS VAL GLY ASP GLU TRP LEU GLU PHE PHE SEQRES 22 A 357 TYR PRO GLN LEU LYS PRO TRP VAL HIS TYR ILE PRO VAL SEQRES 23 A 357 LYS THR ASP LEU SER ASN VAL GLN GLU LEU LEU GLN PHE SEQRES 24 A 357 VAL LYS ALA ASN ASP ASP VAL ALA GLN GLU ILE ALA GLU SEQRES 25 A 357 ARG GLY SER GLN PHE ILE ARG ASN HIS LEU GLN MET ASP SEQRES 26 A 357 ASP ILE THR CYS TYR TRP GLU ASN LEU LEU SER GLU TYR SEQRES 27 A 357 SER LYS PHE LEU SER TYR ASN VAL THR ARG ARG LYS GLY SEQRES 28 A 357 TYR ASP GLN ILE ILE PRO SEQRES 1 B 42 GLY SER ASP GLY ASP GLN CYS ALA SER SER PRO CYS GLN SEQRES 2 B 42 ASN GLY GLY SER CYS LYS ASP GLN LEU GLN SER TYR ILE SEQRES 3 B 42 CYS PHE CYS LEU PRO ALA PHE GLU GLY ARG ASN CYS GLU SEQRES 4 B 42 THR HIS LYS HET NAG A1001 14 HET NAG A1002 28 HET NAG A1003 28 HET UDP A1004 36 HET CL A1005 1 HET GOL A1006 14 HET GOL A1007 14 HET CA B 101 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 UDP C9 H14 N2 O12 P2 FORMUL 7 CL CL 1- FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 CA CA 2+ FORMUL 11 HOH *377(H2 O) HELIX 1 AA1 TRP A 32 TYR A 46 1 15 HELIX 2 AA2 ASN A 53 CYS A 56 5 4 HELIX 3 AA3 TYR A 57 THR A 66 1 10 HELIX 4 AA4 PRO A 67 ARG A 69 5 3 HELIX 5 AA5 SER A 73 ARG A 83 1 11 HELIX 6 AA6 PHE A 104 ILE A 119 1 16 HELIX 7 AA7 GLY A 120 LEU A 122 5 3 HELIX 8 AA8 ALA A 163 TRP A 167 5 5 HELIX 9 AA9 ARG A 183 TRP A 198 1 16 HELIX 10 AB1 PRO A 199 LYS A 203 5 5 HELIX 11 AB2 SER A 215 GLU A 217 5 3 HELIX 12 AB3 ARG A 218 ASN A 228 1 11 HELIX 13 AB4 SER A 244 LEU A 249 5 6 HELIX 14 AB5 HIS A 258 CYS A 263 5 6 HELIX 15 AB6 PHE A 278 CYS A 286 1 9 HELIX 16 AB7 PHE A 301 LEU A 305 5 5 HELIX 17 AB8 ASN A 320 ASN A 331 1 12 HELIX 18 AB9 ASN A 331 LEU A 350 1 20 HELIX 19 AC1 GLN A 351 LYS A 368 1 18 HELIX 20 AC2 ASP B 48 SER B 53 5 6 SHEET 1 AA1 4 MET A 125 ILE A 129 0 SHEET 2 AA1 4 THR A 87 THR A 92 -1 N ILE A 91 O MET A 125 SHEET 3 AA1 4 ARG A 95 ARG A 98 -1 O TYR A 97 N GLN A 90 SHEET 4 AA1 4 ASP A 381 ILE A 383 -1 O ILE A 383 N LEU A 96 SHEET 1 AA2 2 PHE A 148 SER A 149 0 SHEET 2 AA2 2 ILE A 159 MET A 160 1 O ILE A 159 N SER A 149 SHEET 1 AA3 2 ALA A 207 GLY A 211 0 SHEET 2 AA3 2 VAL A 232 TYR A 236 1 O ASP A 233 N ALA A 207 SHEET 1 AA4 3 TYR A 267 ASN A 270 0 SHEET 2 AA4 3 LEU A 289 VAL A 293 1 O VAL A 293 N ASN A 270 SHEET 3 AA4 3 ILE A 312 VAL A 314 1 O ILE A 312 N VAL A 290 SHEET 1 AA5 2 SER B 60 GLN B 64 0 SHEET 2 AA5 2 SER B 67 PHE B 71 -1 O PHE B 71 N SER B 60 SHEET 1 AA6 2 PHE B 76 GLU B 77 0 SHEET 2 AA6 2 THR B 83 HIS B 84 -1 O THR B 83 N GLU B 77 SSBOND 1 CYS A 49 CYS A 56 1555 1555 2.01 SSBOND 2 CYS A 54 CYS A 357 1555 1555 2.09 SSBOND 3 CYS A 102 CYS A 108 1555 1555 2.04 SSBOND 4 CYS A 263 CYS A 286 1555 1555 2.09 SSBOND 5 CYS B 50 CYS B 61 1555 1555 2.03 SSBOND 6 CYS B 55 CYS B 70 1555 1555 2.03 SSBOND 7 CYS B 72 CYS B 81 1555 1555 2.08 LINK ND2 ASN A 40 C1 NAG A1001 1555 1555 1.43 LINK ND2 ASN A 53 C1 NAG A1002 1555 1555 1.44 LINK ND2 ASN A 204 C1 NAG A1003 1555 1555 1.42 LINK O GLY B 47 CA CA B 101 1555 1555 2.72 LINK OD1 ASP B 63 CA CA B 101 1555 1555 2.38 LINK OD2 ASP B 63 CA CA B 101 1555 1555 3.15 LINK O SER B 67 CA CA B 101 1555 1555 3.14 CISPEP 1 GLU A 142 PRO A 143 0 -0.27 CISPEP 2 TRP A 174 PRO A 175 0 2.82 CISPEP 3 ILE A 384 PRO A 385 0 3.29 CRYST1 70.580 76.920 82.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012114 0.00000