HEADER TRANSFERASE 28-JUL-16 5L0U TITLE HUMAN POGLUT1 IN COMPLEX WITH EGF(+) AND UDP-PHOSPHONO-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-GLUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAP10-LIKE 46 KDA PROTEIN,HCLP46,KTEL MOTIF-CONTAINING COMPND 5 PROTEIN 1,MYELODYSPLASTIC SYNDROMES RELATIVE PROTEIN,O- COMPND 6 GLUCOSYLTRANSFERASE RUMI HOMOLOG,HRUMI,PROTEIN O-XYLOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.-,2.4.2.26; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: EGF(+); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGLUT1, C3ORF9, CLP46, KTELC1, MDSRP, MDS010, UNQ490/PRO1006; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS TRANSFERASE GLYCOSYLTRANSFERASE GT-B GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 6 06-NOV-24 5L0U 1 REMARK REVDAT 5 24-MAR-21 5L0U 1 SOURCE HETSYN REVDAT 4 29-JUL-20 5L0U 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 18-APR-18 5L0U 1 REMARK REVDAT 2 30-AUG-17 5L0U 1 JRNL REVDAT 1 09-AUG-17 5L0U 0 JRNL AUTH Z.LI,M.FISCHER,M.SATKUNARAJAH,D.ZHOU,S.G.WITHERS,J.M.RINI JRNL TITL STRUCTURAL BASIS OF NOTCH O-GLUCOSYLATION AND O-XYLOSYLATION JRNL TITL 2 BY MAMMALIAN PROTEIN-O-GLUCOSYLTRANSFERASE 1 (POGLUT1). JRNL REF NAT COMMUN V. 8 185 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28775322 JRNL DOI 10.1038/S41467-017-00255-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 38231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2029 - 4.2305 1.00 3282 149 0.1474 0.1673 REMARK 3 2 4.2305 - 3.3586 0.93 2927 144 0.1476 0.1708 REMARK 3 3 3.3586 - 2.9342 1.00 3085 168 0.1772 0.1878 REMARK 3 4 2.9342 - 2.6660 1.00 3076 158 0.1834 0.2335 REMARK 3 5 2.6660 - 2.4750 1.00 3046 175 0.1875 0.1942 REMARK 3 6 2.4750 - 2.3291 1.00 3054 157 0.1841 0.1927 REMARK 3 7 2.3291 - 2.2125 0.78 2408 128 0.1815 0.2255 REMARK 3 8 2.2125 - 2.1162 1.00 3024 161 0.1881 0.1995 REMARK 3 9 2.1162 - 2.0347 0.70 2140 96 0.2037 0.1901 REMARK 3 10 2.0347 - 1.9645 1.00 3037 167 0.2097 0.2595 REMARK 3 11 1.9645 - 1.9031 0.60 1814 101 0.2363 0.2646 REMARK 3 12 1.9031 - 1.8487 0.80 2419 131 0.2522 0.2868 REMARK 3 13 1.8487 - 1.8000 1.00 3041 143 0.2520 0.2500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3460 REMARK 3 ANGLE : 0.999 4719 REMARK 3 CHIRALITY : 0.061 494 REMARK 3 PLANARITY : 0.005 603 REMARK 3 DIHEDRAL : 12.064 2070 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6808 30.8772 34.5224 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.5146 REMARK 3 T33: 0.2859 T12: -0.0349 REMARK 3 T13: 0.0477 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.8698 L22: 1.7866 REMARK 3 L33: 2.1599 L12: -1.1410 REMARK 3 L13: 0.7786 L23: -0.4412 REMARK 3 S TENSOR REMARK 3 S11: -0.2100 S12: -0.3064 S13: 0.0079 REMARK 3 S21: 0.1398 S22: 0.2344 S23: 0.1850 REMARK 3 S31: 0.1088 S32: -0.6688 S33: -0.0231 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1279 12.7805 31.6426 REMARK 3 T TENSOR REMARK 3 T11: 0.5653 T22: 0.5451 REMARK 3 T33: 0.4418 T12: 0.2807 REMARK 3 T13: -0.0689 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.5269 L22: 3.1176 REMARK 3 L33: 2.9572 L12: -1.2857 REMARK 3 L13: 0.1440 L23: -1.3953 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.1607 S13: -0.1523 REMARK 3 S21: -0.1552 S22: -0.0811 S23: -0.2837 REMARK 3 S31: 0.8396 S32: 0.6990 S33: 0.0412 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5973 19.8471 26.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.2584 REMARK 3 T33: 0.2682 T12: 0.0816 REMARK 3 T13: -0.0229 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.6634 L22: 2.5747 REMARK 3 L33: 3.7366 L12: -0.9035 REMARK 3 L13: 0.4720 L23: -0.9273 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: -0.0638 S13: -0.1028 REMARK 3 S21: -0.0267 S22: 0.0425 S23: -0.1344 REMARK 3 S31: 0.6424 S32: 0.4471 S33: -0.0489 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2560 33.9793 11.7063 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.2150 REMARK 3 T33: 0.2349 T12: 0.0028 REMARK 3 T13: 0.0547 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 3.3487 L22: 1.8311 REMARK 3 L33: 2.7035 L12: -0.6135 REMARK 3 L13: 0.5200 L23: 0.4901 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: 0.1602 S13: 0.2887 REMARK 3 S21: -0.1038 S22: -0.0794 S23: 0.0081 REMARK 3 S31: -0.0719 S32: -0.1028 S33: -0.0029 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6567 23.0955 2.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.4123 T22: 0.4204 REMARK 3 T33: 0.2794 T12: 0.0050 REMARK 3 T13: -0.0398 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 4.9093 L22: 1.1047 REMARK 3 L33: 3.9320 L12: 2.3275 REMARK 3 L13: 0.4870 L23: 0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.3477 S12: 1.1593 S13: -0.7266 REMARK 3 S21: -0.5288 S22: -0.2826 S23: 0.2336 REMARK 3 S31: 0.3165 S32: -0.1545 S33: 0.0077 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9923 29.8108 17.2977 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.2061 REMARK 3 T33: 0.2352 T12: -0.0299 REMARK 3 T13: -0.0140 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.4098 L22: 1.5183 REMARK 3 L33: 3.2570 L12: -0.3212 REMARK 3 L13: -0.0716 L23: 0.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.1043 S13: -0.0108 REMARK 3 S21: -0.0668 S22: 0.0073 S23: 0.1693 REMARK 3 S31: 0.1325 S32: -0.4515 S33: -0.0745 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6629 41.1151 25.6278 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.2201 REMARK 3 T33: 0.3995 T12: 0.0166 REMARK 3 T13: 0.0731 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 9.3249 L22: 2.4285 REMARK 3 L33: 5.9150 L12: -1.7722 REMARK 3 L13: 2.8466 L23: -0.6635 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.3470 S13: 1.1153 REMARK 3 S21: 0.1535 S22: -0.0008 S23: 0.1747 REMARK 3 S31: -0.6099 S32: -0.3567 S33: -0.0592 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2236 22.6706 35.2915 REMARK 3 T TENSOR REMARK 3 T11: 0.3165 T22: 0.4857 REMARK 3 T33: 0.3285 T12: 0.1218 REMARK 3 T13: -0.0610 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 4.2638 L22: 3.3024 REMARK 3 L33: 2.0664 L12: -2.7695 REMARK 3 L13: 0.7369 L23: -0.3817 REMARK 3 S TENSOR REMARK 3 S11: -0.1142 S12: -0.3782 S13: 0.0628 REMARK 3 S21: 0.2890 S22: 0.1887 S23: -0.4985 REMARK 3 S31: 0.3199 S32: 0.7175 S33: 0.0321 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9024 15.9267 8.0785 REMARK 3 T TENSOR REMARK 3 T11: 0.5127 T22: 0.3968 REMARK 3 T33: 0.3819 T12: 0.1010 REMARK 3 T13: 0.0441 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.8788 L22: 8.1124 REMARK 3 L33: 4.0828 L12: 2.5308 REMARK 3 L13: -0.5517 L23: -0.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: -0.3265 S13: -0.3665 REMARK 3 S21: -0.2760 S22: -0.3422 S23: -0.3568 REMARK 3 S31: 0.8693 S32: 0.1504 S33: 0.3298 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7458 24.9924 5.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.5213 T22: 0.5824 REMARK 3 T33: 0.7192 T12: 0.0010 REMARK 3 T13: 0.2154 T23: -0.1711 REMARK 3 L TENSOR REMARK 3 L11: 6.1146 L22: 5.6124 REMARK 3 L33: 8.8473 L12: -2.9536 REMARK 3 L13: 3.2924 L23: -0.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.5021 S12: -0.4949 S13: 1.2020 REMARK 3 S21: -0.5984 S22: 0.5577 S23: -1.6045 REMARK 3 S31: -0.4977 S32: 1.8431 S33: -0.9763 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 MME, 50 MM MES PH 6.5, REMARK 280 10MM CACL2, 250MM NACL, 5% MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 ILE B 40 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 322 O HOH A 501 1.37 REMARK 500 O GLY B 30 H ILE B 40 1.49 REMARK 500 NE2 GLN A 322 O HOH A 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 529 O HOH A 628 2564 2.15 REMARK 500 O HOH A 734 O HOH B 221 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 67.77 38.22 REMARK 500 LYS A 243 -45.45 -131.46 REMARK 500 ALA A 275 -164.87 -125.04 REMARK 500 ASP A 295 22.74 -142.30 REMARK 500 TRP A 308 -24.28 76.02 REMARK 500 SER B 22 -150.41 -155.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 100 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 1 OD2 REMARK 620 2 ILE B 2 O 65.4 REMARK 620 3 GLU B 4 OE1 137.6 72.2 REMARK 620 4 ASN B 18 OD1 81.9 84.6 94.5 REMARK 620 5 THR B 19 O 72.7 137.5 149.3 83.3 REMARK 620 6 SER B 22 O 142.5 147.6 78.2 84.8 71.1 REMARK 620 7 HOH B 202 O 89.3 73.8 78.8 158.4 112.8 113.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L0R RELATED DB: PDB REMARK 900 RELATED ID: 5L0S RELATED DB: PDB REMARK 900 RELATED ID: 5L0T RELATED DB: PDB REMARK 900 RELATED ID: 5L0V RELATED DB: PDB DBREF 5L0U A 29 385 UNP Q8NBL1 PGLT1_HUMAN 29 385 DBREF 5L0U B -1 40 PDB 5L0U 5L0U -1 40 SEQRES 1 A 357 GLY SER LYS TRP LYS VAL PHE ILE ASP GLN ILE ASN ARG SEQRES 2 A 357 SER LEU GLU ASN TYR GLU PRO CYS SER SER GLN ASN CYS SEQRES 3 A 357 SER CYS TYR HIS GLY VAL ILE GLU GLU ASP LEU THR PRO SEQRES 4 A 357 PHE ARG GLY GLY ILE SER ARG LYS MET MET ALA GLU VAL SEQRES 5 A 357 VAL ARG ARG LYS LEU GLY THR HIS TYR GLN ILE THR LYS SEQRES 6 A 357 ASN ARG LEU TYR ARG GLU ASN ASP CYS MET PHE PRO SER SEQRES 7 A 357 ARG CYS SER GLY VAL GLU HIS PHE ILE LEU GLU VAL ILE SEQRES 8 A 357 GLY ARG LEU PRO ASP MET GLU MET VAL ILE ASN VAL ARG SEQRES 9 A 357 ASP TYR PRO GLN VAL PRO LYS TRP MET GLU PRO ALA ILE SEQRES 10 A 357 PRO VAL PHE SER PHE SER LYS THR SER GLU TYR HIS ASP SEQRES 11 A 357 ILE MET TYR PRO ALA TRP THR PHE TRP GLU GLY GLY PRO SEQRES 12 A 357 ALA VAL TRP PRO ILE TYR PRO THR GLY LEU GLY ARG TRP SEQRES 13 A 357 ASP LEU PHE ARG GLU ASP LEU VAL ARG SER ALA ALA GLN SEQRES 14 A 357 TRP PRO TRP LYS LYS LYS ASN SER THR ALA TYR PHE ARG SEQRES 15 A 357 GLY SER ARG THR SER PRO GLU ARG ASP PRO LEU ILE LEU SEQRES 16 A 357 LEU SER ARG LYS ASN PRO LYS LEU VAL ASP ALA GLU TYR SEQRES 17 A 357 THR LYS ASN GLN ALA TRP LYS SER MET LYS ASP THR LEU SEQRES 18 A 357 GLY LYS PRO ALA ALA LYS ASP VAL HIS LEU VAL ASP HIS SEQRES 19 A 357 CYS LYS TYR LYS TYR LEU PHE ASN PHE ARG GLY VAL ALA SEQRES 20 A 357 ALA SER PHE ARG PHE LYS HIS LEU PHE LEU CYS GLY SER SEQRES 21 A 357 LEU VAL PHE HIS VAL GLY ASP GLU TRP LEU GLU PHE PHE SEQRES 22 A 357 TYR PRO GLN LEU LYS PRO TRP VAL HIS TYR ILE PRO VAL SEQRES 23 A 357 LYS THR ASP LEU SER ASN VAL GLN GLU LEU LEU GLN PHE SEQRES 24 A 357 VAL LYS ALA ASN ASP ASP VAL ALA GLN GLU ILE ALA GLU SEQRES 25 A 357 ARG GLY SER GLN PHE ILE ARG ASN HIS LEU GLN MET ASP SEQRES 26 A 357 ASP ILE THR CYS TYR TRP GLU ASN LEU LEU SER GLU TYR SEQRES 27 A 357 SER LYS PHE LEU SER TYR ASN VAL THR ARG ARG LYS GLY SEQRES 28 A 357 TYR ASP GLN ILE ILE PRO SEQRES 1 B 42 GLY SER ASP ILE ASP GLU CYS ALA SER ASN PRO CYS GLN SEQRES 2 B 42 ASN GLY GLY THR CYS VAL ASN THR VAL GLY SER TYR THR SEQRES 3 B 42 CYS LEU CYS PRO PRO GLY PHE THR GLY PRO ASN CYS GLU SEQRES 4 B 42 ASP ASP ILE HET NAG A 401 28 HET NAG A 402 28 HET NAG A 403 28 HET 660 A 404 36 HET CA B 100 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 660 [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-BIS(OXIDANYLIDENE) HETNAM 2 660 PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY- HETNAM 3 660 OXIDANYL-PHOSPHORYL]OXY-[[(2~{S},3~{R},4~{S},5~{S}, HETNAM 4 660 6~{R})-6-(HYDROXYMETHYL)-3,4,5-TRIS(OXIDANYL)OXAN-2- HETNAM 5 660 YL]METHYL]PHOSPHINIC ACID HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 660 UDP-GLUCOSE PHOSPHONATE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 660 C16 H26 N2 O16 P2 FORMUL 7 CA CA 2+ FORMUL 8 HOH *308(H2 O) HELIX 1 AA1 TRP A 32 TYR A 46 1 15 HELIX 2 AA2 ASN A 53 CYS A 56 5 4 HELIX 3 AA3 TYR A 57 THR A 66 1 10 HELIX 4 AA4 PRO A 67 ARG A 69 5 3 HELIX 5 AA5 SER A 73 ARG A 83 1 11 HELIX 6 AA6 PHE A 104 ILE A 119 1 16 HELIX 7 AA7 GLY A 120 LEU A 122 5 3 HELIX 8 AA8 ALA A 163 TRP A 167 5 5 HELIX 9 AA9 ARG A 183 TRP A 198 1 16 HELIX 10 AB1 PRO A 199 LYS A 203 5 5 HELIX 11 AB2 SER A 215 GLU A 217 5 3 HELIX 12 AB3 ARG A 218 ASN A 228 1 11 HELIX 13 AB4 SER A 244 LEU A 249 5 6 HELIX 14 AB5 HIS A 258 CYS A 263 5 6 HELIX 15 AB6 PHE A 278 CYS A 286 1 9 HELIX 16 AB7 PHE A 301 LEU A 305 5 5 HELIX 17 AB8 ASN A 320 ASN A 331 1 12 HELIX 18 AB9 ASN A 331 LEU A 350 1 20 HELIX 19 AC1 GLN A 351 LYS A 368 1 18 HELIX 20 AC2 ASP B 3 ASN B 8 5 6 SHEET 1 AA1 4 MET A 125 ILE A 129 0 SHEET 2 AA1 4 THR A 87 THR A 92 -1 N ILE A 91 O MET A 125 SHEET 3 AA1 4 ARG A 95 ARG A 98 -1 O TYR A 97 N GLN A 90 SHEET 4 AA1 4 ASP A 381 GLN A 382 -1 O ASP A 381 N ARG A 98 SHEET 1 AA2 2 PHE A 148 SER A 149 0 SHEET 2 AA2 2 ILE A 159 MET A 160 1 O ILE A 159 N SER A 149 SHEET 1 AA3 2 ALA A 207 SER A 212 0 SHEET 2 AA3 2 VAL A 232 THR A 237 1 O ASP A 233 N ALA A 207 SHEET 1 AA4 3 TYR A 267 ASN A 270 0 SHEET 2 AA4 3 LEU A 289 VAL A 293 1 O PHE A 291 N LEU A 268 SHEET 3 AA4 3 ILE A 312 VAL A 314 1 O ILE A 312 N VAL A 290 SHEET 1 AA5 2 THR B 15 ASN B 18 0 SHEET 2 AA5 2 TYR B 23 LEU B 26 -1 O THR B 24 N VAL B 17 SHEET 1 AA6 2 PHE B 31 THR B 32 0 SHEET 2 AA6 2 ASP B 38 ASP B 39 -1 O ASP B 38 N THR B 32 SSBOND 1 CYS A 49 CYS A 56 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 357 1555 1555 2.05 SSBOND 3 CYS A 102 CYS A 108 1555 1555 2.04 SSBOND 4 CYS A 263 CYS A 286 1555 1555 2.05 SSBOND 5 CYS B 5 CYS B 16 1555 1555 2.04 SSBOND 6 CYS B 10 CYS B 25 1555 1555 2.04 SSBOND 7 CYS B 27 CYS B 36 1555 1555 2.05 LINK ND2 ASN A 53 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 204 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN A 373 C1 NAG A 403 1555 1555 1.44 LINK OD2 ASP B 1 CA CA B 100 1555 1555 2.68 LINK O ILE B 2 CA CA B 100 1555 1555 2.47 LINK OE1 GLU B 4 CA CA B 100 1555 1555 2.35 LINK OD1 ASN B 18 CA CA B 100 1555 1555 2.31 LINK O THR B 19 CA CA B 100 1555 1555 2.51 LINK O SER B 22 CA CA B 100 1555 1555 2.43 LINK CA CA B 100 O HOH B 202 1555 1555 2.28 CISPEP 1 GLU A 142 PRO A 143 0 -1.19 CISPEP 2 TRP A 174 PRO A 175 0 2.21 CISPEP 3 ILE A 384 PRO A 385 0 1.41 CRYST1 71.850 74.390 83.310 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012003 0.00000