HEADER METAL BINDING PROTEIN 02-AUG-16 5L32 TITLE CRYSTAL STRUCTURE OF THE ZN-RIDC1 COMPLEX BEARING SIX INTERFACIAL TITLE 2 DISULFIDE BONDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 23-128; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS PROTEIN ENGINEERING, METALLOPROTEIN, CYTOCHROME, DISULFIDE BONDING, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.A.CHURCHFIELD,F.A.TEZCAN REVDAT 3 04-OCT-23 5L32 1 REMARK REVDAT 2 10-MAR-21 5L32 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK ATOM REVDAT 1 09-NOV-16 5L32 0 JRNL AUTH L.A.CHURCHFIELD,A.MEDINA-MORALES,J.D.BRODIN,A.PEREZ, JRNL AUTH 2 F.A.TEZCAN JRNL TITL DE NOVO DESIGN OF AN ALLOSTERIC METALLOPROTEIN ASSEMBLY WITH JRNL TITL 2 STRAINED DISULFIDE BONDS. JRNL REF J.AM.CHEM.SOC. V. 138 13163 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27649076 JRNL DOI 10.1021/JACS.6B08458 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 195 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3556 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4853 ; 1.576 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 5.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;42.456 ;26.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;14.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2720 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 3.571 ; 4.546 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2108 ; 4.299 ; 6.801 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1864 ; 4.440 ; 4.768 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5129 ; 6.201 ;37.714 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000220284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HNJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS (PH 6.5), 35% PEG 400, PH 7.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.26650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -278.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 19 51.79 -118.50 REMARK 500 ASP D 60 -54.06 71.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 201 NA 92.0 REMARK 620 3 HEC A 201 NB 87.5 90.5 REMARK 620 4 HEC A 201 NC 89.1 178.9 89.3 REMARK 620 5 HEC A 201 ND 91.5 90.4 178.6 89.8 REMARK 620 6 HIS A 102 NE2 179.3 87.6 93.1 91.3 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 ASP B 74 OD1 134.5 REMARK 620 3 HIS C 73 NE2 97.7 115.1 REMARK 620 4 HIS C 77 NE2 95.4 104.3 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HIS A 77 NE2 96.6 REMARK 620 3 HIS C 63 NE2 109.6 108.8 REMARK 620 4 ASP D 74 OD1 116.6 109.2 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 HIS B 63 NE2 125.5 REMARK 620 3 HIS D 73 NE2 121.7 101.1 REMARK 620 4 HIS D 77 NE2 101.8 100.2 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 7 SD REMARK 620 2 HEC B 201 NA 89.3 REMARK 620 3 HEC B 201 NB 85.7 89.1 REMARK 620 4 HEC B 201 NC 91.0 179.0 90.0 REMARK 620 5 HEC B 201 ND 94.6 91.7 179.1 89.1 REMARK 620 6 HIS B 102 NE2 178.3 89.3 93.4 90.3 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 73 NE2 REMARK 620 2 HIS B 77 NE2 100.0 REMARK 620 3 ASP C 74 OD1 120.7 110.9 REMARK 620 4 HIS D 63 NE2 107.2 104.9 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 7 SD REMARK 620 2 HEC C 201 NA 84.8 REMARK 620 3 HEC C 201 NB 87.7 88.2 REMARK 620 4 HEC C 201 NC 94.5 178.1 90.0 REMARK 620 5 HEC C 201 ND 91.5 92.3 179.0 89.5 REMARK 620 6 HIS C 102 NE2 175.2 90.8 90.5 89.9 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET D 7 SD REMARK 620 2 HEC D 201 NA 92.8 REMARK 620 3 HEC D 201 NB 90.2 88.4 REMARK 620 4 HEC D 201 NC 86.6 178.4 90.2 REMARK 620 5 HEC D 201 ND 89.1 91.7 179.3 89.7 REMARK 620 6 HIS D 102 NE2 171.6 93.9 94.9 86.7 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM C 201 and CYS C REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM C 201 and CYS C REMARK 800 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM D 201 and CYS D REMARK 800 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM D 201 and CYS D REMARK 800 98 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L31 RELATED DB: PDB DBREF 5L32 A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 5L32 B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 5L32 C 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 5L32 D 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 5L32 ALA A 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 5L32 CYS A 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 5L32 TRP A 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 5L32 SER A 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 5L32 HIS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 5L32 TRP A 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 5L32 ILE A 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 5L32 HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 5L32 HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 5L32 CYS A 81 UNP P0ABE7 GLU 103 ENGINEERED MUTATION SEQADV 5L32 CYS A 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 5L32 CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5L32 CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 5L32 ALA B 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 5L32 CYS B 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 5L32 TRP B 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 5L32 SER B 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 5L32 HIS B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 5L32 TRP B 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 5L32 ILE B 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 5L32 HIS B 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 5L32 HIS B 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 5L32 CYS B 81 UNP P0ABE7 GLU 103 ENGINEERED MUTATION SEQADV 5L32 CYS B 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 5L32 CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5L32 CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 5L32 ALA C 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 5L32 CYS C 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 5L32 TRP C 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 5L32 SER C 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 5L32 HIS C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 5L32 TRP C 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 5L32 ILE C 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 5L32 HIS C 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 5L32 HIS C 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 5L32 CYS C 81 UNP P0ABE7 GLU 103 ENGINEERED MUTATION SEQADV 5L32 CYS C 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 5L32 CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5L32 CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 5L32 ALA D 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 5L32 CYS D 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 5L32 TRP D 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 5L32 SER D 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 5L32 HIS D 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 5L32 TRP D 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 5L32 ILE D 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 5L32 HIS D 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 5L32 HIS D 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 5L32 CYS D 81 UNP P0ABE7 GLU 103 ENGINEERED MUTATION SEQADV 5L32 CYS D 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 5L32 CYS D 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5L32 CYS D 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA CYS ASP SEQRES 4 A 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 TRP ILE LEU ILE GLY GLN ILE HIS ASP ALA LEU HIS LEU SEQRES 7 A 106 ALA ASN CYS GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA CYS ASP SEQRES 4 B 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 B 106 TRP ILE LEU ILE GLY GLN ILE HIS ASP ALA LEU HIS LEU SEQRES 7 B 106 ALA ASN CYS GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA CYS ASP SEQRES 4 C 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 C 106 TRP ILE LEU ILE GLY GLN ILE HIS ASP ALA LEU HIS LEU SEQRES 7 C 106 ALA ASN CYS GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG SEQRES 1 D 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 D 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 D 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA CYS ASP SEQRES 4 D 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 D 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 D 106 TRP ILE LEU ILE GLY GLN ILE HIS ASP ALA LEU HIS LEU SEQRES 7 D 106 ALA ASN CYS GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 D 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 D 106 TYR ARG HET HEC A 201 43 HET P6G A 202 19 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET HEC B 201 43 HET ZN B 202 1 HET HEC C 201 43 HET HEC D 201 43 HETNAM HEC HEME C HETNAM P6G HEXAETHYLENE GLYCOL HETNAM ZN ZINC ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 6 P6G C12 H26 O7 FORMUL 7 ZN 4(ZN 2+) FORMUL 14 HOH *73(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 TRP A 41 1 20 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 CYS A 81 1 27 HELIX 5 AA5 LYS A 83 GLN A 93 1 11 HELIX 6 AA6 GLN A 93 ARG A 106 1 14 HELIX 7 AA7 ASP B 2 ALA B 20 1 19 HELIX 8 AA8 ASN B 22 TRP B 41 1 20 HELIX 9 AA9 PRO B 45 GLU B 49 5 5 HELIX 10 AB1 SER B 55 GLY B 82 1 28 HELIX 11 AB2 LYS B 83 ARG B 106 1 24 HELIX 12 AB3 ASP C 2 LYS C 19 1 18 HELIX 13 AB4 ASN C 22 TRP C 41 1 20 HELIX 14 AB5 PRO C 45 GLU C 49 5 5 HELIX 15 AB6 SER C 55 CYS C 81 1 27 HELIX 16 AB7 LYS C 83 GLN C 93 1 11 HELIX 17 AB8 LEU C 94 ARG C 106 1 13 HELIX 18 AB9 ASP D 2 LYS D 19 1 18 HELIX 19 AC1 ASN D 22 TRP D 41 1 20 HELIX 20 AC2 PRO D 45 GLU D 49 5 5 HELIX 21 AC3 GLU D 57 CYS D 81 1 25 HELIX 22 AC4 LYS D 83 GLN D 93 1 11 HELIX 23 AC5 GLN D 93 ARG D 106 1 14 SSBOND 1 CYS A 38 CYS C 38 1555 1555 2.08 SSBOND 2 CYS A 81 CYS D 81 1555 1555 2.02 SSBOND 3 CYS A 96 CYS B 96 1555 1555 1.94 SSBOND 4 CYS B 38 CYS D 38 1555 1555 2.03 SSBOND 5 CYS B 81 CYS C 81 1555 1555 2.08 SSBOND 6 CYS C 96 CYS D 96 1555 1555 1.99 LINK SG CYS A 98 CAB HEC A 201 1555 1555 1.68 LINK SG CYS A 101 CAC HEC A 201 1555 1555 1.69 LINK SG CYS B 98 CAB HEC B 201 1555 1555 1.71 LINK SG CYS B 101 CAC HEC B 201 1555 1555 1.68 LINK SG CYS C 98 CAB HEC C 201 1555 1555 1.65 LINK SG CYS C 101 CAC HEC C 201 1555 1555 1.64 LINK SG CYS D 98 CAB HEC D 201 1555 1555 1.65 LINK SG CYS D 101 CAC HEC D 201 1555 1555 1.66 LINK SD MET A 7 FE HEC A 201 1555 1555 2.37 LINK NE2 HIS A 63 ZN ZN A 204 1555 1555 1.82 LINK NE2 HIS A 73 ZN ZN A 203 1555 1555 2.22 LINK OD1 ASP A 74 ZN ZN A 205 1555 1555 1.94 LINK NE2 HIS A 77 ZN ZN A 203 1555 1555 2.18 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.14 LINK ZN ZN A 203 NE2 HIS C 63 1555 1555 2.13 LINK ZN ZN A 203 OD1 ASP D 74 1555 1555 1.82 LINK ZN ZN A 204 OD1 ASP B 74 1555 1555 1.82 LINK ZN ZN A 204 NE2 HIS C 73 1555 1555 2.22 LINK ZN ZN A 204 NE2 HIS C 77 1555 1555 2.17 LINK ZN ZN A 205 NE2 HIS B 63 1555 1555 2.10 LINK ZN ZN A 205 NE2 HIS D 73 1555 1555 2.07 LINK ZN ZN A 205 NE2 HIS D 77 1555 1555 2.12 LINK SD MET B 7 FE HEC B 201 1555 1555 2.34 LINK NE2 HIS B 73 ZN ZN B 202 1555 1555 2.21 LINK NE2 HIS B 77 ZN ZN B 202 1555 1555 2.04 LINK NE2 HIS B 102 FE HEC B 201 1555 1555 2.18 LINK ZN ZN B 202 OD1 ASP C 74 1555 1555 2.01 LINK ZN ZN B 202 NE2 HIS D 63 1555 1555 2.11 LINK SD MET C 7 FE HEC C 201 1555 1555 2.38 LINK NE2 HIS C 102 FE HEC C 201 1555 1555 2.09 LINK SD MET D 7 FE HEC D 201 1555 1555 2.57 LINK NE2 HIS D 102 FE HEC D 201 1555 1555 2.11 SITE 1 AC1 11 GLU A 4 MET A 7 GLU A 8 PRO A 46 SITE 2 AC1 11 PHE A 61 PHE A 65 CYS A 98 CYS A 101 SITE 3 AC1 11 HIS A 102 ARG A 106 HOH A 304 SITE 1 AC2 6 GLU A 92 CYS A 96 ASN A 99 GLN A 103 SITE 2 AC2 6 GLU B 92 CYS B 96 SITE 1 AC3 4 HIS A 73 HIS A 77 HIS C 63 ASP D 74 SITE 1 AC4 4 HIS A 63 ASP B 74 HIS C 73 HIS C 77 SITE 1 AC5 4 ASP A 74 HIS B 63 HIS D 73 HIS D 77 SITE 1 AC6 4 HIS B 73 HIS B 77 ASP C 74 HIS D 63 SITE 1 AC7 17 GLU B 4 MET B 7 PRO B 46 PHE B 61 SITE 2 AC7 17 PHE B 65 LEU B 94 LYS B 95 CYS B 96 SITE 3 AC7 17 THR B 97 ASN B 99 ALA B 100 CYS B 101 SITE 4 AC7 17 HIS B 102 TYR B 105 ARG B 106 HOH B 308 SITE 5 AC7 17 HOH B 311 SITE 1 AC8 16 GLU B 4 MET B 7 PRO B 46 PHE B 61 SITE 2 AC8 16 PHE B 65 THR B 97 CYS B 98 ASN B 99 SITE 3 AC8 16 ALA B 100 HIS B 102 GLN B 103 LYS B 104 SITE 4 AC8 16 TYR B 105 ARG B 106 HOH B 308 HOH B 311 SITE 1 AC9 16 GLU C 4 MET C 7 GLU C 8 ASN C 11 SITE 2 AC9 16 PHE C 61 PHE C 65 LEU C 94 THR C 97 SITE 3 AC9 16 CYS C 98 ASN C 99 ALA C 100 HIS C 102 SITE 4 AC9 16 GLN C 103 LYS C 104 TYR C 105 ARG C 106 SITE 1 AD1 15 GLU C 4 MET C 7 GLU C 8 ASN C 11 SITE 2 AD1 15 PHE C 61 PHE C 65 LEU C 94 LYS C 95 SITE 3 AD1 15 CYS C 96 THR C 97 ASN C 99 ALA C 100 SITE 4 AD1 15 CYS C 101 HIS C 102 ARG C 106 SITE 1 AD2 15 GLU D 4 MET D 7 LEU D 14 PHE D 61 SITE 2 AD2 15 PHE D 65 LEU D 68 THR D 97 CYS D 98 SITE 3 AD2 15 ASN D 99 ALA D 100 HIS D 102 GLN D 103 SITE 4 AD2 15 LYS D 104 TYR D 105 ARG D 106 SITE 1 AD3 15 GLU D 4 MET D 7 LEU D 14 PHE D 61 SITE 2 AD3 15 PHE D 65 LEU D 68 LEU D 94 LYS D 95 SITE 3 AD3 15 CYS D 96 THR D 97 ASN D 99 ALA D 100 SITE 4 AD3 15 CYS D 101 HIS D 102 ARG D 106 CRYST1 48.060 62.533 72.437 90.00 99.01 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020807 0.000000 0.003301 0.00000 SCALE2 0.000000 0.015992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013978 0.00000