HEADER APOPTOSIS 03-AUG-16 5L36 TITLE CRYSTAL STRUCTURE OF A HUMAN FASL MUTANT IN COMPLEX WITH HUMAN DCR3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6B; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 30-195; COMPND 5 SYNONYM: DECOY RECEPTOR 3,DCR3,DECOY RECEPTOR FOR FAS LIGAND,M68; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 6; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: UNP RESIDUES 130-281; COMPND 11 SYNONYM: APOPTOSIS ANTIGEN LIGAND,APTL,CD95 LIGAND,CD95-L,FAS ANTIGEN COMPND 12 LIGAND,FASL; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF6B, DCR3, TR6, UNQ186/PRO212; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: FASLG, APT1LG1, CD95L, FASL, TNFSF6; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 14 PPPB1_S; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 1182036 KEYWDS FASL, CD95L, DCR3, TNF LIGAND AND RECEPTOR, DECOY RECEPTOR, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,J.B.BONANNO,S.C.ALMO REVDAT 5 04-OCT-23 5L36 1 REMARK REVDAT 4 25-DEC-19 5L36 1 REMARK REVDAT 3 27-SEP-17 5L36 1 JRNL REMARK REVDAT 2 16-NOV-16 5L36 1 JRNL REVDAT 1 07-SEP-16 5L36 0 JRNL AUTH W.LIU,U.RAMAGOPAL,H.CHENG,J.B.BONANNO,R.TORO,R.BHOSLE, JRNL AUTH 2 C.ZHAN,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN FASL AND ITS DECOY JRNL TITL 2 RECEPTOR DCR3. JRNL REF STRUCTURE V. 24 2016 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27806260 JRNL DOI 10.1016/J.STR.2016.09.009 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 1.43000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.581 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2345 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2112 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3182 ; 2.000 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4875 ; 1.097 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 8.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.417 ;22.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;20.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2655 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1160 ; 4.389 ; 5.508 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1159 ; 4.386 ; 5.509 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1443 ; 6.784 ; 8.222 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5L36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11951 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MSV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE:ACETIC ACID REMARK 280 PH4.5; 1M AMMONIUM PHOSPHATE DIBASIC, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 63.63350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.73882 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.75400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 63.63350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.73882 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.75400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 63.63350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.73882 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.75400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 63.63350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.73882 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.75400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 63.63350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.73882 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.75400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 63.63350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.73882 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.75400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.47764 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 137.50800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 73.47764 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 137.50800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 73.47764 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 137.50800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 73.47764 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 137.50800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 73.47764 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 137.50800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 73.47764 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 137.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 30 REMARK 465 ALA B 31 REMARK 465 GLU B 32 REMARK 465 THR B 175 REMARK 465 ALA B 176 REMARK 465 LEU B 177 REMARK 465 GLY B 178 REMARK 465 LEU B 179 REMARK 465 ALA B 180 REMARK 465 LEU B 181 REMARK 465 ASN B 182 REMARK 465 THR B 194 REMARK 465 SER B 195 REMARK 465 THR B 196 REMARK 465 GLY B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 MET A 129 REMARK 465 GLN A 130 REMARK 465 ILE A 131 REMARK 465 GLY A 132 REMARK 465 HIS A 133 REMARK 465 PRO A 134 REMARK 465 SER A 135 REMARK 465 PRO A 136 REMARK 465 PRO A 137 REMARK 465 PRO A 138 REMARK 465 GLU A 139 REMARK 465 LYS A 140 REMARK 465 LYS A 141 REMARK 465 GLU A 142 REMARK 465 ASN A 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 279 OH TYR A 279 2555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 114 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 123 45.22 36.44 REMARK 500 ALA B 140 125.24 -172.83 REMARK 500 THR B 148 150.77 -49.61 REMARK 500 PRO B 152 117.89 -37.72 REMARK 500 LEU A 171 106.74 -161.41 REMARK 500 GLN A 220 123.48 -170.52 REMARK 500 ASP A 221 136.56 -32.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 260 VAL A 261 -149.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L19 RELATED DB: PDB REMARK 900 RELATED ID: 4MSV RELATED DB: PDB DBREF 5L36 B 30 195 UNP O95407 TNF6B_HUMAN 30 195 DBREF 5L36 A 130 281 UNP P48023 TNFL6_HUMAN 130 281 SEQADV 5L36 THR B 196 UNP O95407 EXPRESSION TAG SEQADV 5L36 GLY B 197 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 198 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 199 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 200 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 201 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 202 UNP O95407 EXPRESSION TAG SEQADV 5L36 HIS B 203 UNP O95407 EXPRESSION TAG SEQADV 5L36 MET A 129 UNP P48023 INITIATING METHIONINE SEQADV 5L36 HIS A 164 UNP P48023 ASP 164 CONFLICT SEQADV 5L36 GLU A 165 UNP P48023 THR 165 CONFLICT SEQADV 5L36 LEU A 166 UNP P48023 TYR 166 CONFLICT SEQADV 5L36 LEU A 168 UNP P48023 ILE 168 CONFLICT SEQADV 5L36 ALA A 169 UNP P48023 VAL 169 CONFLICT SEQRES 1 B 174 VAL ALA GLU THR PRO THR TYR PRO TRP ARG ASP ALA GLU SEQRES 2 B 174 THR GLY GLU ARG LEU VAL CYS ALA GLN CYS PRO PRO GLY SEQRES 3 B 174 THR PHE VAL GLN ARG PRO CYS ARG ARG ASP SER PRO THR SEQRES 4 B 174 THR CYS GLY PRO CYS PRO PRO ARG HIS TYR THR GLN PHE SEQRES 5 B 174 TRP ASN TYR LEU GLU ARG CYS ARG TYR CYS ASN VAL LEU SEQRES 6 B 174 CYS GLY GLU ARG GLU GLU GLU ALA ARG ALA CYS HIS ALA SEQRES 7 B 174 THR HIS ASN ARG ALA CYS ARG CYS ARG THR GLY PHE PHE SEQRES 8 B 174 ALA HIS ALA GLY PHE CYS LEU GLU HIS ALA SER CYS PRO SEQRES 9 B 174 PRO GLY ALA GLY VAL ILE ALA PRO GLY THR PRO SER GLN SEQRES 10 B 174 ASN THR GLN CYS GLN PRO CYS PRO PRO GLY THR PHE SER SEQRES 11 B 174 ALA SER SER SER SER SER GLU GLN CYS GLN PRO HIS ARG SEQRES 12 B 174 ASN CYS THR ALA LEU GLY LEU ALA LEU ASN VAL PRO GLY SEQRES 13 B 174 SER SER SER HIS ASP THR LEU CYS THR SER THR GLY HIS SEQRES 14 B 174 HIS HIS HIS HIS HIS SEQRES 1 A 153 MET GLN ILE GLY HIS PRO SER PRO PRO PRO GLU LYS LYS SEQRES 2 A 153 GLU LEU ARG LYS VAL ALA HIS LEU THR GLY LYS SER ASN SEQRES 3 A 153 SER ARG SER MET PRO LEU GLU TRP GLU HIS GLU LEU GLY SEQRES 4 A 153 LEU ALA LEU LEU SER GLY VAL LYS TYR LYS LYS GLY GLY SEQRES 5 A 153 LEU VAL ILE ASN GLU THR GLY LEU TYR PHE VAL TYR SER SEQRES 6 A 153 LYS VAL TYR PHE ARG GLY GLN SER CYS ASN ASN LEU PRO SEQRES 7 A 153 LEU SER HIS LYS VAL TYR MET ARG ASN SER LYS TYR PRO SEQRES 8 A 153 GLN ASP LEU VAL MET MET GLU GLY LYS MET MET SER TYR SEQRES 9 A 153 CYS THR THR GLY GLN MET TRP ALA ARG SER SER TYR LEU SEQRES 10 A 153 GLY ALA VAL PHE ASN LEU THR SER ALA ASP HIS LEU TYR SEQRES 11 A 153 VAL ASN VAL SER GLU LEU SER LEU VAL ASN PHE GLU GLU SEQRES 12 A 153 SER GLN THR PHE PHE GLY LEU TYR LYS LEU HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *3(H2 O) HELIX 1 AA1 GLU A 263 SER A 265 5 3 SHEET 1 AA1 2 THR B 35 ARG B 39 0 SHEET 2 AA1 2 ARG B 46 ALA B 50 -1 O CYS B 49 N TYR B 36 SHEET 1 AA2 2 THR B 56 ARG B 60 0 SHEET 2 AA2 2 THR B 69 PRO B 72 -1 O THR B 69 N GLN B 59 SHEET 1 AA3 2 HIS B 77 TYR B 78 0 SHEET 2 AA3 2 ARG B 89 TYR B 90 -1 O ARG B 89 N TYR B 78 SHEET 1 AA4 2 GLU B 99 ARG B 103 0 SHEET 2 AA4 2 ALA B 112 CYS B 115 -1 O ARG B 114 N GLU B 100 SHEET 1 AA5 2 PHE B 119 HIS B 122 0 SHEET 2 AA5 2 PHE B 125 GLU B 128 -1 O PHE B 125 N HIS B 122 SHEET 1 AA6 2 ALA B 136 ALA B 140 0 SHEET 2 AA6 2 GLN B 149 PRO B 152 -1 O GLN B 151 N GLY B 137 SHEET 1 AA7 2 THR B 157 PHE B 158 0 SHEET 2 AA7 2 GLN B 169 PRO B 170 -1 O GLN B 169 N PHE B 158 SHEET 1 AA8 5 LEU A 170 SER A 172 0 SHEET 2 AA8 5 VAL A 146 THR A 150 -1 N VAL A 146 O SER A 172 SHEET 3 AA8 5 PHE A 275 LYS A 280 -1 O PHE A 276 N LEU A 149 SHEET 4 AA8 5 GLY A 187 GLY A 199 -1 N TYR A 192 O GLY A 277 SHEET 5 AA8 5 TRP A 239 LEU A 251 -1 O LEU A 251 N GLY A 187 SHEET 1 AA9 5 LEU A 170 SER A 172 0 SHEET 2 AA9 5 VAL A 146 THR A 150 -1 N VAL A 146 O SER A 172 SHEET 3 AA9 5 PHE A 275 LYS A 280 -1 O PHE A 276 N LEU A 149 SHEET 4 AA9 5 GLY A 187 GLY A 199 -1 N TYR A 192 O GLY A 277 SHEET 5 AA9 5 VAL A 267 ASN A 268 -1 O ASN A 268 N TYR A 196 SHEET 1 AB1 5 LYS A 175 LYS A 177 0 SHEET 2 AB1 5 GLY A 180 VAL A 182 -1 O VAL A 182 N LYS A 175 SHEET 3 AB1 5 HIS A 256 VAL A 261 -1 O LEU A 257 N LEU A 181 SHEET 4 AB1 5 LEU A 207 ASN A 215 -1 N TYR A 212 O TYR A 258 SHEET 5 AB1 5 TYR A 218 MET A 229 -1 O LEU A 222 N MET A 213 SSBOND 1 CYS B 49 CYS B 62 1555 1555 2.06 SSBOND 2 CYS B 52 CYS B 70 1555 1555 2.04 SSBOND 3 CYS B 73 CYS B 88 1555 1555 2.14 SSBOND 4 CYS B 91 CYS B 105 1555 1555 2.10 SSBOND 5 CYS B 95 CYS B 113 1555 1555 2.10 SSBOND 6 CYS B 115 CYS B 126 1555 1555 2.19 SSBOND 7 CYS B 132 CYS B 150 1555 1555 2.06 SSBOND 8 CYS B 153 CYS B 168 1555 1555 2.10 SSBOND 9 CYS B 174 CYS B 193 1555 1555 2.05 SSBOND 10 CYS A 202 CYS A 233 1555 1555 2.02 CISPEP 1 MET A 158 PRO A 159 0 -6.52 SITE 1 AC1 1 HIS B 122 CRYST1 127.267 127.267 206.262 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007857 0.004537 0.000000 0.00000 SCALE2 0.000000 0.009073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004848 0.00000