data_5L4O # _entry.id 5L4O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5L4O pdb_00005l4o 10.2210/pdb5l4o/pdb WWPDB D_1200000107 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-01 2 'Structure model' 1 1 2017-03-15 3 'Structure model' 1 2 2017-04-26 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_audit_support 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_audit_support.funding_organization' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L4O _pdbx_database_status.recvd_initial_deposition_date 2016-05-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Monestier, A.' 1 'Schmitt, E.' 2 'Mechulam, Y.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev RNA _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 673 _citation.page_last 682 _citation.title 'The structure of an E. coli tRNAf(Met) A1-U72 variant shows an unusual conformation of the A1-U72 base pair.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.057877.116 _citation.pdbx_database_id_PubMed 28143889 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Monestier, A.' 1 ? primary 'Aleksandrov, A.' 2 ? primary 'Coureux, P.D.' 3 ? primary 'Panvert, M.' 4 ? primary 'Mechulam, Y.' 5 ? primary 'Schmitt, E.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA (76-MER)' 24833.904 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AGCGGGG(4SU)GGAGCAGCCUGG(H2U)AGCUCGUCGGG(OMC)UCAUAACCCGAAGAUCGUCGG(5MU)(PSU)CAAA UCCGGCCCCCGCUACCA ; _entity_poly.pdbx_seq_one_letter_code_can AGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCUACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 G n 1 7 G n 1 8 4SU n 1 9 G n 1 10 G n 1 11 A n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 C n 1 17 C n 1 18 U n 1 19 G n 1 20 G n 1 21 H2U n 1 22 A n 1 23 G n 1 24 C n 1 25 U n 1 26 C n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 G n 1 32 G n 1 33 OMC n 1 34 U n 1 35 C n 1 36 A n 1 37 U n 1 38 A n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 A n 1 45 A n 1 46 G n 1 47 A n 1 48 U n 1 49 C n 1 50 G n 1 51 U n 1 52 C n 1 53 G n 1 54 G n 1 55 5MU n 1 56 PSU n 1 57 C n 1 58 A n 1 59 A n 1 60 A n 1 61 U n 1 62 C n 1 63 C n 1 64 G n 1 65 G n 1 66 C n 1 67 C n 1 68 C n 1 69 C n 1 70 C n 1 71 G n 1 72 C n 1 73 U n 1 74 A n 1 75 C n 1 76 C n 1 77 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 77 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4SU 'RNA linking' n "4-THIOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 4SU 8 8 8 4SU S4U A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 17 17 U U A A n A 1 19 G 19 18 18 G G A . n A 1 20 G 20 19 19 G G A . n A 1 21 H2U 21 20 20 H2U H2U A . n A 1 22 A 22 21 21 A A A . n A 1 23 G 23 22 22 G G A . n A 1 24 C 24 23 23 C C A . n A 1 25 U 25 24 24 U U A . n A 1 26 C 26 25 25 C C A . n A 1 27 G 27 26 26 G G A . n A 1 28 U 28 27 27 U U A . n A 1 29 C 29 28 28 C C A . n A 1 30 G 30 29 29 G G A . n A 1 31 G 31 30 30 G G A . n A 1 32 G 32 31 31 G G A . n A 1 33 OMC 33 32 32 OMC OMC A . n A 1 34 U 34 33 33 U U A . n A 1 35 C 35 34 34 C C A . n A 1 36 A 36 35 35 A A A . n A 1 37 U 37 36 36 U U A . n A 1 38 A 38 37 37 A A A . n A 1 39 A 39 38 38 A A A . n A 1 40 C 40 39 39 C C A . n A 1 41 C 41 40 40 C C A . n A 1 42 C 42 41 41 C C A . n A 1 43 G 43 42 42 G G A . n A 1 44 A 44 43 43 A A A . n A 1 45 A 45 44 44 A A A . n A 1 46 G 46 45 45 G G A . n A 1 47 A 47 46 46 A A A . n A 1 48 U 48 47 47 U U A . n A 1 49 C 49 48 48 C C A . n A 1 50 G 50 49 49 G G A . n A 1 51 U 51 50 50 U U A . n A 1 52 C 52 51 51 C C A . n A 1 53 G 53 52 52 G G A . n A 1 54 G 54 53 53 G G A . n A 1 55 5MU 55 54 54 5MU RT A . n A 1 56 PSU 56 55 55 PSU PSU A . n A 1 57 C 57 56 56 C C A . n A 1 58 A 58 57 57 A A A . n A 1 59 A 59 58 58 A A A . n A 1 60 A 60 59 59 A A A . n A 1 61 U 61 60 60 U U A . n A 1 62 C 62 61 61 C C A . n A 1 63 C 63 62 62 C C A . n A 1 64 G 64 63 63 G G A . n A 1 65 G 65 64 64 G G A . n A 1 66 C 66 65 65 C C A . n A 1 67 C 67 66 66 C C A . n A 1 68 C 68 67 67 C C A . n A 1 69 C 69 68 68 C C A . n A 1 70 C 70 69 69 C C A . n A 1 71 G 71 70 70 G G A . n A 1 72 C 72 71 71 C C A . n A 1 73 U 73 72 72 U U A . n A 1 74 A 74 73 73 A A A . n A 1 75 C 75 74 74 C C A . n A 1 76 C 76 75 75 C C A . n A 1 77 A 77 76 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 1 NA Na A . C 3 HOH 1 201 5 HOH HOH A . C 3 HOH 2 202 4 HOH HOH A . C 3 HOH 3 203 2 HOH HOH A . C 3 HOH 4 204 3 HOH HOH A . C 3 HOH 5 205 1 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5L4O _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.150 _cell.length_a_esd ? _cell.length_b 142.620 _cell.length_b_esd ? _cell.length_c 202.120 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L4O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 75.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 6000, 2M NaCl' _exptl_crystal_grow.pdbx_pH_range 6.3 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978570 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.978570 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 78.2 _reflns.entry_id 5L4O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.79 _reflns.d_resolution_low 41.23 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13192 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.84 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.03 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.79 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.95 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.464 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.74 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5L4O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.799 _refine.ls_d_res_low 35.167 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13004 _refine.ls_number_reflns_R_free 624 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.08 _refine.ls_percent_reflns_R_free 4.80 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1982 _refine.ls_R_factor_R_free 0.2265 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1969 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3CW5 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.12 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.37 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1623 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1629 _refine_hist.d_res_high 2.799 _refine_hist.d_res_low 35.167 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1812 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.140 ? 2823 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.405 ? 883 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 375 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 76 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7986 3.0800 . . 159 3004 99.00 . . . 0.3589 . 0.3841 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0800 3.5254 . . 144 3052 98.00 . . . 0.2418 . 0.2238 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5254 4.4402 . . 169 3070 100.00 . . . 0.2463 . 0.1986 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4402 35.1694 . . 152 3254 100.00 . . . 0.1956 . 0.1694 . . . . . . . . . . # _struct.entry_id 5L4O _struct.title 'Structure of an E.coli initiator tRNAfMet A1-U72 variant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L4O _struct_keywords.text 'tRNA-Translation initiation, translation' _struct_keywords.pdbx_keywords TRANSLATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5L4O _struct_ref.pdbx_db_accession 5L4O _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5L4O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5L4O _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2400 ? 1 MORE -11 ? 1 'SSA (A^2)' 12690 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 7 "O3'" ? ? ? 1_555 A 4SU 8 P ? ? A G 7 A 4SU 8 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A 4SU 8 "O3'" ? ? ? 1_555 A G 9 P ? ? A 4SU 8 A G 9 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? A G 20 "O3'" ? ? ? 1_555 A H2U 21 P ? ? A G 19 A H2U 20 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale4 covale both ? A H2U 21 "O3'" ? ? ? 1_555 A A 22 P ? ? A H2U 20 A A 21 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale5 covale both ? A G 32 "O3'" ? ? ? 1_555 A OMC 33 P ? ? A G 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale6 covale both ? A OMC 33 "O3'" ? ? ? 1_555 A U 34 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale7 covale both ? A G 54 "O3'" ? ? ? 1_555 A 5MU 55 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale both ? A 5MU 55 "O3'" ? ? ? 1_555 A PSU 56 P ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale9 covale both ? A PSU 56 "O3'" ? ? ? 1_555 A C 57 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A 4SU 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A 4SU 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A 4SU 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A 4SU 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 46 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 25 N3 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 25 O4 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 22 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 49 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 49 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 A PSU 56 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 N7 ? ? ? 1_555 A A 47 N6 ? ? A G 22 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 27 N1 ? ? ? 1_555 A A 45 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A G 27 O6 ? ? ? 1_555 A A 45 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 27 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 27 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A OMC 33 N3 ? ? ? 1_555 A A 39 N6 ? ? A OMC 32 A A 38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 50 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 50 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 54 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 54 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 54 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A 5MU 55 N3 ? ? ? 1_555 A A 59 N7 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog73 hydrog ? ? A 5MU 55 O2 ? ? ? 1_555 A A 59 N6 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 5MU _struct_site.pdbx_auth_seq_id 54 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residues 5MU A 54 and PSU A 55' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G A 19 ? G A 18 . ? 1_555 ? 2 AC1 5 G A 54 ? G A 53 . ? 1_555 ? 3 AC1 5 C A 57 ? C A 56 . ? 1_555 ? 4 AC1 5 A A 58 ? A A 57 . ? 1_555 ? 5 AC1 5 A A 59 ? A A 58 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.498 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.109 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 7.1262 _pdbx_refine_tls.origin_y 17.3952 _pdbx_refine_tls.origin_z -17.5451 _pdbx_refine_tls.T[1][1] 0.9419 _pdbx_refine_tls.T[2][2] 0.5869 _pdbx_refine_tls.T[3][3] 0.7827 _pdbx_refine_tls.T[1][2] 0.0798 _pdbx_refine_tls.T[1][3] 0.0298 _pdbx_refine_tls.T[2][3] 0.0741 _pdbx_refine_tls.L[1][1] 2.3437 _pdbx_refine_tls.L[2][2] 1.5002 _pdbx_refine_tls.L[3][3] 5.9170 _pdbx_refine_tls.L[1][2] 0.3424 _pdbx_refine_tls.L[1][3] -1.4025 _pdbx_refine_tls.L[2][3] 0.4743 _pdbx_refine_tls.S[1][1] -0.0574 _pdbx_refine_tls.S[1][2] 0.4583 _pdbx_refine_tls.S[1][3] -0.1723 _pdbx_refine_tls.S[2][1] -0.2576 _pdbx_refine_tls.S[2][2] -0.2462 _pdbx_refine_tls.S[2][3] -0.0979 _pdbx_refine_tls.S[3][1] 0.6156 _pdbx_refine_tls.S[3][2] 0.4040 _pdbx_refine_tls.S[3][3] 0.3049 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id A _pdbx_unobs_or_zero_occ_residues.auth_seq_id 76 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id A _pdbx_unobs_or_zero_occ_residues.label_seq_id 77 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4SU N1 N N N 1 4SU C2 C N N 2 4SU N3 N N N 3 4SU C4 C N N 4 4SU C5 C N N 5 4SU C6 C N N 6 4SU O2 O N N 7 4SU S4 S N N 8 4SU "C1'" C N R 9 4SU "C2'" C N R 10 4SU "O2'" O N N 11 4SU "C3'" C N S 12 4SU "C4'" C N R 13 4SU "O3'" O N N 14 4SU "O4'" O N N 15 4SU "C5'" C N N 16 4SU "O5'" O N N 17 4SU P P N N 18 4SU OP1 O N N 19 4SU OP2 O N N 20 4SU OP3 O N N 21 4SU HN3 H N N 22 4SU H5 H N N 23 4SU H6 H N N 24 4SU "H1'" H N N 25 4SU "H2'" H N N 26 4SU "HO2'" H N N 27 4SU "H3'" H N N 28 4SU "H4'" H N N 29 4SU "HO3'" H N N 30 4SU "H5'" H N N 31 4SU "H5''" H N N 32 4SU HOP2 H N N 33 4SU HOP3 H N N 34 5MU N1 N N N 35 5MU C2 C N N 36 5MU N3 N N N 37 5MU C4 C N N 38 5MU C5 C N N 39 5MU C5M C N N 40 5MU C6 C N N 41 5MU O2 O N N 42 5MU O4 O N N 43 5MU "C1'" C N R 44 5MU "C2'" C N R 45 5MU "O2'" O N N 46 5MU "C3'" C N S 47 5MU "C4'" C N R 48 5MU "O3'" O N N 49 5MU "O4'" O N N 50 5MU "C5'" C N N 51 5MU "O5'" O N N 52 5MU P P N N 53 5MU OP1 O N N 54 5MU OP2 O N N 55 5MU OP3 O N N 56 5MU HN3 H N N 57 5MU H71 H N N 58 5MU H72 H N N 59 5MU H73 H N N 60 5MU H6 H N N 61 5MU "H1'" H N N 62 5MU "H2'" H N N 63 5MU "HO2'" H N N 64 5MU "H3'" H N N 65 5MU "H4'" H N N 66 5MU "HO3'" H N N 67 5MU "H5'" H N N 68 5MU "H5''" H N N 69 5MU HOP2 H N N 70 5MU HOP3 H N N 71 A OP3 O N N 72 A P P N N 73 A OP1 O N N 74 A OP2 O N N 75 A "O5'" O N N 76 A "C5'" C N N 77 A "C4'" C N R 78 A "O4'" O N N 79 A "C3'" C N S 80 A "O3'" O N N 81 A "C2'" C N R 82 A "O2'" O N N 83 A "C1'" C N R 84 A N9 N Y N 85 A C8 C Y N 86 A N7 N Y N 87 A C5 C Y N 88 A C6 C Y N 89 A N6 N N N 90 A N1 N Y N 91 A C2 C Y N 92 A N3 N Y N 93 A C4 C Y N 94 A HOP3 H N N 95 A HOP2 H N N 96 A "H5'" H N N 97 A "H5''" H N N 98 A "H4'" H N N 99 A "H3'" H N N 100 A "HO3'" H N N 101 A "H2'" H N N 102 A "HO2'" H N N 103 A "H1'" H N N 104 A H8 H N N 105 A H61 H N N 106 A H62 H N N 107 A H2 H N N 108 C OP3 O N N 109 C P P N N 110 C OP1 O N N 111 C OP2 O N N 112 C "O5'" O N N 113 C "C5'" C N N 114 C "C4'" C N R 115 C "O4'" O N N 116 C "C3'" C N S 117 C "O3'" O N N 118 C "C2'" C N R 119 C "O2'" O N N 120 C "C1'" C N R 121 C N1 N N N 122 C C2 C N N 123 C O2 O N N 124 C N3 N N N 125 C C4 C N N 126 C N4 N N N 127 C C5 C N N 128 C C6 C N N 129 C HOP3 H N N 130 C HOP2 H N N 131 C "H5'" H N N 132 C "H5''" H N N 133 C "H4'" H N N 134 C "H3'" H N N 135 C "HO3'" H N N 136 C "H2'" H N N 137 C "HO2'" H N N 138 C "H1'" H N N 139 C H41 H N N 140 C H42 H N N 141 C H5 H N N 142 C H6 H N N 143 G OP3 O N N 144 G P P N N 145 G OP1 O N N 146 G OP2 O N N 147 G "O5'" O N N 148 G "C5'" C N N 149 G "C4'" C N R 150 G "O4'" O N N 151 G "C3'" C N S 152 G "O3'" O N N 153 G "C2'" C N R 154 G "O2'" O N N 155 G "C1'" C N R 156 G N9 N Y N 157 G C8 C Y N 158 G N7 N Y N 159 G C5 C Y N 160 G C6 C N N 161 G O6 O N N 162 G N1 N N N 163 G C2 C N N 164 G N2 N N N 165 G N3 N N N 166 G C4 C Y N 167 G HOP3 H N N 168 G HOP2 H N N 169 G "H5'" H N N 170 G "H5''" H N N 171 G "H4'" H N N 172 G "H3'" H N N 173 G "HO3'" H N N 174 G "H2'" H N N 175 G "HO2'" H N N 176 G "H1'" H N N 177 G H8 H N N 178 G H1 H N N 179 G H21 H N N 180 G H22 H N N 181 H2U P P N N 182 H2U OP1 O N N 183 H2U OP2 O N N 184 H2U OP3 O N N 185 H2U "O5'" O N N 186 H2U "C5'" C N N 187 H2U "C4'" C N R 188 H2U "O4'" O N N 189 H2U "C3'" C N S 190 H2U "O3'" O N N 191 H2U "C1'" C N R 192 H2U "C2'" C N R 193 H2U "O2'" O N N 194 H2U N1 N N N 195 H2U C2 C N N 196 H2U O2 O N N 197 H2U N3 N N N 198 H2U C4 C N N 199 H2U O4 O N N 200 H2U C5 C N N 201 H2U C6 C N N 202 H2U HOP2 H N N 203 H2U HOP3 H N N 204 H2U "H5'" H N N 205 H2U "H5''" H N N 206 H2U "H4'" H N N 207 H2U "H3'" H N N 208 H2U "HO3'" H N N 209 H2U "H1'" H N N 210 H2U "H2'" H N N 211 H2U "HO2'" H N N 212 H2U HN3 H N N 213 H2U H51 H N N 214 H2U H52 H N N 215 H2U H61 H N N 216 H2U H62 H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 NA NA NA N N 221 OMC N1 N N N 222 OMC C2 C N N 223 OMC N3 N N N 224 OMC C4 C N N 225 OMC C5 C N N 226 OMC C6 C N N 227 OMC O2 O N N 228 OMC N4 N N N 229 OMC "C1'" C N R 230 OMC "C2'" C N R 231 OMC "O2'" O N N 232 OMC CM2 C N N 233 OMC "C3'" C N R 234 OMC "C4'" C N R 235 OMC "O4'" O N N 236 OMC "O3'" O N N 237 OMC "C5'" C N N 238 OMC "O5'" O N N 239 OMC P P N N 240 OMC OP1 O N N 241 OMC OP2 O N N 242 OMC OP3 O N N 243 OMC H5 H N N 244 OMC H6 H N N 245 OMC HN41 H N N 246 OMC HN42 H N N 247 OMC "H1'" H N N 248 OMC "H2'" H N N 249 OMC HM21 H N N 250 OMC HM22 H N N 251 OMC HM23 H N N 252 OMC "H3'" H N N 253 OMC "H4'" H N N 254 OMC "HO3'" H N N 255 OMC "H5'" H N N 256 OMC "H5''" H N N 257 OMC HOP2 H N N 258 OMC HOP3 H N N 259 PSU N1 N N N 260 PSU C2 C N N 261 PSU N3 N N N 262 PSU C4 C N N 263 PSU C5 C N N 264 PSU C6 C N N 265 PSU O2 O N N 266 PSU O4 O N N 267 PSU "C1'" C N S 268 PSU "C2'" C N R 269 PSU "O2'" O N N 270 PSU "C3'" C N S 271 PSU "C4'" C N R 272 PSU "O3'" O N N 273 PSU "O4'" O N N 274 PSU "C5'" C N N 275 PSU "O5'" O N N 276 PSU P P N N 277 PSU OP1 O N N 278 PSU OP2 O N N 279 PSU OP3 O N N 280 PSU HN1 H N N 281 PSU HN3 H N N 282 PSU H6 H N N 283 PSU "H1'" H N N 284 PSU "H2'" H N N 285 PSU "HO2'" H N N 286 PSU "H3'" H N N 287 PSU "H4'" H N N 288 PSU "HO3'" H N N 289 PSU "H5'" H N N 290 PSU "H5''" H N N 291 PSU HOP2 H N N 292 PSU HOP3 H N N 293 U OP3 O N N 294 U P P N N 295 U OP1 O N N 296 U OP2 O N N 297 U "O5'" O N N 298 U "C5'" C N N 299 U "C4'" C N R 300 U "O4'" O N N 301 U "C3'" C N S 302 U "O3'" O N N 303 U "C2'" C N R 304 U "O2'" O N N 305 U "C1'" C N R 306 U N1 N N N 307 U C2 C N N 308 U O2 O N N 309 U N3 N N N 310 U C4 C N N 311 U O4 O N N 312 U C5 C N N 313 U C6 C N N 314 U HOP3 H N N 315 U HOP2 H N N 316 U "H5'" H N N 317 U "H5''" H N N 318 U "H4'" H N N 319 U "H3'" H N N 320 U "HO3'" H N N 321 U "H2'" H N N 322 U "HO2'" H N N 323 U "H1'" H N N 324 U H3 H N N 325 U H5 H N N 326 U H6 H N N 327 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4SU N1 C2 sing N N 1 4SU N1 C6 sing N N 2 4SU N1 "C1'" sing N N 3 4SU C2 N3 sing N N 4 4SU C2 O2 doub N N 5 4SU N3 C4 sing N N 6 4SU N3 HN3 sing N N 7 4SU C4 C5 sing N N 8 4SU C4 S4 doub N N 9 4SU C5 C6 doub N N 10 4SU C5 H5 sing N N 11 4SU C6 H6 sing N N 12 4SU "C1'" "C2'" sing N N 13 4SU "C1'" "O4'" sing N N 14 4SU "C1'" "H1'" sing N N 15 4SU "C2'" "O2'" sing N N 16 4SU "C2'" "C3'" sing N N 17 4SU "C2'" "H2'" sing N N 18 4SU "O2'" "HO2'" sing N N 19 4SU "C3'" "C4'" sing N N 20 4SU "C3'" "O3'" sing N N 21 4SU "C3'" "H3'" sing N N 22 4SU "C4'" "O4'" sing N N 23 4SU "C4'" "C5'" sing N N 24 4SU "C4'" "H4'" sing N N 25 4SU "O3'" "HO3'" sing N N 26 4SU "C5'" "O5'" sing N N 27 4SU "C5'" "H5'" sing N N 28 4SU "C5'" "H5''" sing N N 29 4SU "O5'" P sing N N 30 4SU P OP1 doub N N 31 4SU P OP2 sing N N 32 4SU P OP3 sing N N 33 4SU OP2 HOP2 sing N N 34 4SU OP3 HOP3 sing N N 35 5MU N1 C2 sing N N 36 5MU N1 C6 sing N N 37 5MU N1 "C1'" sing N N 38 5MU C2 N3 sing N N 39 5MU C2 O2 doub N N 40 5MU N3 C4 sing N N 41 5MU N3 HN3 sing N N 42 5MU C4 C5 sing N N 43 5MU C4 O4 doub N N 44 5MU C5 C5M sing N N 45 5MU C5 C6 doub N N 46 5MU C5M H71 sing N N 47 5MU C5M H72 sing N N 48 5MU C5M H73 sing N N 49 5MU C6 H6 sing N N 50 5MU "C1'" "C2'" sing N N 51 5MU "C1'" "O4'" sing N N 52 5MU "C1'" "H1'" sing N N 53 5MU "C2'" "O2'" sing N N 54 5MU "C2'" "C3'" sing N N 55 5MU "C2'" "H2'" sing N N 56 5MU "O2'" "HO2'" sing N N 57 5MU "C3'" "C4'" sing N N 58 5MU "C3'" "O3'" sing N N 59 5MU "C3'" "H3'" sing N N 60 5MU "C4'" "O4'" sing N N 61 5MU "C4'" "C5'" sing N N 62 5MU "C4'" "H4'" sing N N 63 5MU "O3'" "HO3'" sing N N 64 5MU "C5'" "O5'" sing N N 65 5MU "C5'" "H5'" sing N N 66 5MU "C5'" "H5''" sing N N 67 5MU "O5'" P sing N N 68 5MU P OP1 doub N N 69 5MU P OP2 sing N N 70 5MU P OP3 sing N N 71 5MU OP2 HOP2 sing N N 72 5MU OP3 HOP3 sing N N 73 A OP3 P sing N N 74 A OP3 HOP3 sing N N 75 A P OP1 doub N N 76 A P OP2 sing N N 77 A P "O5'" sing N N 78 A OP2 HOP2 sing N N 79 A "O5'" "C5'" sing N N 80 A "C5'" "C4'" sing N N 81 A "C5'" "H5'" sing N N 82 A "C5'" "H5''" sing N N 83 A "C4'" "O4'" sing N N 84 A "C4'" "C3'" sing N N 85 A "C4'" "H4'" sing N N 86 A "O4'" "C1'" sing N N 87 A "C3'" "O3'" sing N N 88 A "C3'" "C2'" sing N N 89 A "C3'" "H3'" sing N N 90 A "O3'" "HO3'" sing N N 91 A "C2'" "O2'" sing N N 92 A "C2'" "C1'" sing N N 93 A "C2'" "H2'" sing N N 94 A "O2'" "HO2'" sing N N 95 A "C1'" N9 sing N N 96 A "C1'" "H1'" sing N N 97 A N9 C8 sing Y N 98 A N9 C4 sing Y N 99 A C8 N7 doub Y N 100 A C8 H8 sing N N 101 A N7 C5 sing Y N 102 A C5 C6 sing Y N 103 A C5 C4 doub Y N 104 A C6 N6 sing N N 105 A C6 N1 doub Y N 106 A N6 H61 sing N N 107 A N6 H62 sing N N 108 A N1 C2 sing Y N 109 A C2 N3 doub Y N 110 A C2 H2 sing N N 111 A N3 C4 sing Y N 112 C OP3 P sing N N 113 C OP3 HOP3 sing N N 114 C P OP1 doub N N 115 C P OP2 sing N N 116 C P "O5'" sing N N 117 C OP2 HOP2 sing N N 118 C "O5'" "C5'" sing N N 119 C "C5'" "C4'" sing N N 120 C "C5'" "H5'" sing N N 121 C "C5'" "H5''" sing N N 122 C "C4'" "O4'" sing N N 123 C "C4'" "C3'" sing N N 124 C "C4'" "H4'" sing N N 125 C "O4'" "C1'" sing N N 126 C "C3'" "O3'" sing N N 127 C "C3'" "C2'" sing N N 128 C "C3'" "H3'" sing N N 129 C "O3'" "HO3'" sing N N 130 C "C2'" "O2'" sing N N 131 C "C2'" "C1'" sing N N 132 C "C2'" "H2'" sing N N 133 C "O2'" "HO2'" sing N N 134 C "C1'" N1 sing N N 135 C "C1'" "H1'" sing N N 136 C N1 C2 sing N N 137 C N1 C6 sing N N 138 C C2 O2 doub N N 139 C C2 N3 sing N N 140 C N3 C4 doub N N 141 C C4 N4 sing N N 142 C C4 C5 sing N N 143 C N4 H41 sing N N 144 C N4 H42 sing N N 145 C C5 C6 doub N N 146 C C5 H5 sing N N 147 C C6 H6 sing N N 148 G OP3 P sing N N 149 G OP3 HOP3 sing N N 150 G P OP1 doub N N 151 G P OP2 sing N N 152 G P "O5'" sing N N 153 G OP2 HOP2 sing N N 154 G "O5'" "C5'" sing N N 155 G "C5'" "C4'" sing N N 156 G "C5'" "H5'" sing N N 157 G "C5'" "H5''" sing N N 158 G "C4'" "O4'" sing N N 159 G "C4'" "C3'" sing N N 160 G "C4'" "H4'" sing N N 161 G "O4'" "C1'" sing N N 162 G "C3'" "O3'" sing N N 163 G "C3'" "C2'" sing N N 164 G "C3'" "H3'" sing N N 165 G "O3'" "HO3'" sing N N 166 G "C2'" "O2'" sing N N 167 G "C2'" "C1'" sing N N 168 G "C2'" "H2'" sing N N 169 G "O2'" "HO2'" sing N N 170 G "C1'" N9 sing N N 171 G "C1'" "H1'" sing N N 172 G N9 C8 sing Y N 173 G N9 C4 sing Y N 174 G C8 N7 doub Y N 175 G C8 H8 sing N N 176 G N7 C5 sing Y N 177 G C5 C6 sing N N 178 G C5 C4 doub Y N 179 G C6 O6 doub N N 180 G C6 N1 sing N N 181 G N1 C2 sing N N 182 G N1 H1 sing N N 183 G C2 N2 sing N N 184 G C2 N3 doub N N 185 G N2 H21 sing N N 186 G N2 H22 sing N N 187 G N3 C4 sing N N 188 H2U P OP1 doub N N 189 H2U P OP2 sing N N 190 H2U P OP3 sing N N 191 H2U P "O5'" sing N N 192 H2U OP2 HOP2 sing N N 193 H2U OP3 HOP3 sing N N 194 H2U "O5'" "C5'" sing N N 195 H2U "C5'" "C4'" sing N N 196 H2U "C5'" "H5'" sing N N 197 H2U "C5'" "H5''" sing N N 198 H2U "C4'" "O4'" sing N N 199 H2U "C4'" "C3'" sing N N 200 H2U "C4'" "H4'" sing N N 201 H2U "O4'" "C1'" sing N N 202 H2U "C3'" "O3'" sing N N 203 H2U "C3'" "C2'" sing N N 204 H2U "C3'" "H3'" sing N N 205 H2U "O3'" "HO3'" sing N N 206 H2U "C1'" "C2'" sing N N 207 H2U "C1'" N1 sing N N 208 H2U "C1'" "H1'" sing N N 209 H2U "C2'" "O2'" sing N N 210 H2U "C2'" "H2'" sing N N 211 H2U "O2'" "HO2'" sing N N 212 H2U N1 C2 sing N N 213 H2U N1 C6 sing N N 214 H2U C2 O2 doub N N 215 H2U C2 N3 sing N N 216 H2U N3 C4 sing N N 217 H2U N3 HN3 sing N N 218 H2U C4 O4 doub N N 219 H2U C4 C5 sing N N 220 H2U C5 C6 sing N N 221 H2U C5 H51 sing N N 222 H2U C5 H52 sing N N 223 H2U C6 H61 sing N N 224 H2U C6 H62 sing N N 225 HOH O H1 sing N N 226 HOH O H2 sing N N 227 OMC N1 C2 sing N N 228 OMC N1 C6 sing N N 229 OMC N1 "C1'" sing N N 230 OMC C2 N3 sing N N 231 OMC C2 O2 doub N N 232 OMC N3 C4 doub N N 233 OMC C4 C5 sing N N 234 OMC C4 N4 sing N N 235 OMC C5 C6 doub N N 236 OMC C5 H5 sing N N 237 OMC C6 H6 sing N N 238 OMC N4 HN41 sing N N 239 OMC N4 HN42 sing N N 240 OMC "C1'" "C2'" sing N N 241 OMC "C1'" "O4'" sing N N 242 OMC "C1'" "H1'" sing N N 243 OMC "C2'" "O2'" sing N N 244 OMC "C2'" "C3'" sing N N 245 OMC "C2'" "H2'" sing N N 246 OMC "O2'" CM2 sing N N 247 OMC CM2 HM21 sing N N 248 OMC CM2 HM22 sing N N 249 OMC CM2 HM23 sing N N 250 OMC "C3'" "C4'" sing N N 251 OMC "C3'" "O3'" sing N N 252 OMC "C3'" "H3'" sing N N 253 OMC "C4'" "O4'" sing N N 254 OMC "C4'" "C5'" sing N N 255 OMC "C4'" "H4'" sing N N 256 OMC "O3'" "HO3'" sing N N 257 OMC "C5'" "O5'" sing N N 258 OMC "C5'" "H5'" sing N N 259 OMC "C5'" "H5''" sing N N 260 OMC "O5'" P sing N N 261 OMC P OP1 doub N N 262 OMC P OP2 sing N N 263 OMC P OP3 sing N N 264 OMC OP2 HOP2 sing N N 265 OMC OP3 HOP3 sing N N 266 PSU N1 C2 sing N N 267 PSU N1 C6 sing N N 268 PSU N1 HN1 sing N N 269 PSU C2 N3 sing N N 270 PSU C2 O2 doub N N 271 PSU N3 C4 sing N N 272 PSU N3 HN3 sing N N 273 PSU C4 C5 sing N N 274 PSU C4 O4 doub N N 275 PSU C5 C6 doub N N 276 PSU C5 "C1'" sing N N 277 PSU C6 H6 sing N N 278 PSU "C1'" "C2'" sing N N 279 PSU "C1'" "O4'" sing N N 280 PSU "C1'" "H1'" sing N N 281 PSU "C2'" "O2'" sing N N 282 PSU "C2'" "C3'" sing N N 283 PSU "C2'" "H2'" sing N N 284 PSU "O2'" "HO2'" sing N N 285 PSU "C3'" "C4'" sing N N 286 PSU "C3'" "O3'" sing N N 287 PSU "C3'" "H3'" sing N N 288 PSU "C4'" "O4'" sing N N 289 PSU "C4'" "C5'" sing N N 290 PSU "C4'" "H4'" sing N N 291 PSU "O3'" "HO3'" sing N N 292 PSU "C5'" "O5'" sing N N 293 PSU "C5'" "H5'" sing N N 294 PSU "C5'" "H5''" sing N N 295 PSU "O5'" P sing N N 296 PSU P OP1 doub N N 297 PSU P OP2 sing N N 298 PSU P OP3 sing N N 299 PSU OP2 HOP2 sing N N 300 PSU OP3 HOP3 sing N N 301 U OP3 P sing N N 302 U OP3 HOP3 sing N N 303 U P OP1 doub N N 304 U P OP2 sing N N 305 U P "O5'" sing N N 306 U OP2 HOP2 sing N N 307 U "O5'" "C5'" sing N N 308 U "C5'" "C4'" sing N N 309 U "C5'" "H5'" sing N N 310 U "C5'" "H5''" sing N N 311 U "C4'" "O4'" sing N N 312 U "C4'" "C3'" sing N N 313 U "C4'" "H4'" sing N N 314 U "O4'" "C1'" sing N N 315 U "C3'" "O3'" sing N N 316 U "C3'" "C2'" sing N N 317 U "C3'" "H3'" sing N N 318 U "O3'" "HO3'" sing N N 319 U "C2'" "O2'" sing N N 320 U "C2'" "C1'" sing N N 321 U "C2'" "H2'" sing N N 322 U "O2'" "HO2'" sing N N 323 U "C1'" N1 sing N N 324 U "C1'" "H1'" sing N N 325 U N1 C2 sing N N 326 U N1 C6 sing N N 327 U C2 O2 doub N N 328 U C2 N3 sing N N 329 U N3 C4 sing N N 330 U N3 H3 sing N N 331 U C4 O4 doub N N 332 U C4 C5 sing N N 333 U C5 C6 doub N N 334 U C5 H5 sing N N 335 U C6 H6 sing N N 336 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5L4O 'double helix' 5L4O 'a-form double helix' 5L4O 'parallel strands' 5L4O 'hairpin loop' 5L4O 'mismatched base pair' 5L4O 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 72 1_555 -0.019 -0.055 -0.063 -0.253 -4.905 -4.994 1 A_G2:C71_A A 2 ? A 71 ? 19 1 1 A C 3 1_555 A G 71 1_555 0.609 -0.201 0.210 0.269 -6.821 -3.319 2 A_C3:G70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A C 70 1_555 -0.337 -0.029 0.272 0.145 -9.144 2.065 3 A_G4:C69_A A 4 ? A 69 ? 19 1 1 A G 5 1_555 A C 69 1_555 -0.274 -0.171 0.170 1.185 -10.516 2.824 4 A_G5:C68_A A 5 ? A 68 ? 19 1 1 A G 6 1_555 A C 68 1_555 -0.297 -0.195 0.039 -14.507 -13.677 3.348 5 A_G6:C67_A A 6 ? A 67 ? 19 1 1 A G 7 1_555 A C 67 1_555 0.126 -0.221 -0.082 -9.953 -4.361 -4.291 6 A_G7:C66_A A 7 ? A 66 ? 19 1 1 A G 50 1_555 A C 66 1_555 -0.048 -0.087 0.157 -6.265 -11.210 0.447 7 A_G49:C65_A A 49 ? A 65 ? 19 1 1 A U 51 1_555 A G 65 1_555 1.748 -0.672 0.483 -4.923 -6.888 -0.206 8 A_U50:G64_A A 50 ? A 64 ? 28 1 1 A C 52 1_555 A G 64 1_555 -0.081 -0.214 0.108 -1.227 -13.393 1.622 9 A_C51:G63_A A 51 ? A 63 ? 19 1 1 A G 53 1_555 A C 63 1_555 -0.461 -0.285 -0.457 -9.589 -10.068 -5.103 10 A_G52:C62_A A 52 ? A 62 ? 19 1 1 A G 54 1_555 A C 62 1_555 -0.276 -0.428 -0.076 -11.998 -8.887 -6.508 11 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 55 1_555 A A 59 1_555 4.186 -2.316 0.419 -4.898 11.840 -99.649 12 A_5MU54:A58_A A 54 ? A 58 ? 24 4 1 A PSU 56 1_555 A G 19 1_555 0.578 -5.457 0.283 12.802 10.765 -97.080 13 A_PSU55:G18_A A 55 ? A 18 ? ? 2 1 A A 39 1_555 A OMC 33 1_555 -2.902 -0.181 0.218 17.705 -3.271 -6.099 14 A_A38:OMC32_A A 38 ? A 32 ? ? 1 1 A C 40 1_555 A G 32 1_555 -0.610 0.215 -0.067 20.334 -16.789 -1.899 15 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A C 41 1_555 A G 31 1_555 -0.498 0.232 -0.325 9.505 -15.935 -1.570 16 A_C40:G30_A A 40 ? A 30 ? 19 1 1 A C 42 1_555 A G 30 1_555 -0.009 -0.198 -0.224 6.888 -6.843 -8.847 17 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A G 43 1_555 A C 29 1_555 -1.005 -0.282 -0.002 -1.467 -14.131 -3.765 18 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A A 44 1_555 A U 28 1_555 -0.716 0.089 0.526 -5.918 -20.614 1.422 19 A_A43:U27_A A 43 ? A 27 ? 20 1 1 A A 45 1_555 A G 27 1_555 0.042 2.113 0.006 -17.019 -21.535 -9.552 20 A_A44:G26_A A 44 ? A 26 ? 8 1 1 A G 10 1_555 A C 26 1_555 -0.239 0.123 -0.504 2.079 -7.911 1.759 21 A_G10:C25_A A 10 ? A 25 ? 19 1 1 A A 11 1_555 A U 25 1_555 0.297 0.195 0.227 -6.898 5.025 2.490 22 A_A11:U24_A A 11 ? A 24 ? 20 1 1 A G 12 1_555 A C 24 1_555 -0.184 0.094 -0.221 -3.627 -10.671 0.821 23 A_G12:C23_A A 12 ? A 23 ? 19 1 1 A C 13 1_555 A G 23 1_555 0.406 0.040 -0.316 -0.328 -7.856 6.290 24 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A 4SU 8 1_555 -4.407 -1.835 1.048 4.344 26.694 -98.455 25 A_A14:4SU8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 49 1_555 0.092 3.263 0.600 -4.352 18.955 163.648 26 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 20 1_555 A C 57 1_555 0.120 -0.235 0.204 -10.688 -13.168 2.892 27 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 72 1_555 A C 3 1_555 A G 71 1_555 -0.032 -1.947 3.256 -2.427 2.686 37.150 -3.388 -0.263 3.108 4.204 3.798 37.320 1 AA_G2C3:G70C71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A C 3 1_555 A G 71 1_555 A G 4 1_555 A C 70 1_555 -0.053 -1.991 3.227 0.889 6.650 25.535 -5.977 0.332 2.629 14.723 -1.968 26.388 2 AA_C3G4:C69G70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A C 70 1_555 A G 5 1_555 A C 69 1_555 0.581 -1.792 3.083 1.286 7.971 29.825 -4.724 -0.873 2.553 15.141 -2.444 30.874 3 AA_G4G5:C68C69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 69 1_555 A G 6 1_555 A C 68 1_555 0.635 -2.045 3.427 1.098 11.693 33.039 -5.070 -0.899 2.595 19.798 -1.859 35.009 4 AA_G5G6:C67C68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A G 6 1_555 A C 68 1_555 A G 7 1_555 A C 67 1_555 -0.807 -1.915 3.078 2.028 10.850 34.011 -4.454 1.565 2.327 17.971 -3.359 35.707 5 AA_G6G7:C66C67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A G 7 1_555 A C 67 1_555 A G 50 1_555 A C 66 1_555 0.318 -1.934 3.163 1.469 4.372 32.677 -4.097 -0.327 2.898 7.722 -2.595 32.992 6 AA_G7G49:C65C66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A G 50 1_555 A C 66 1_555 A U 51 1_555 A G 65 1_555 -0.364 -1.297 3.097 -2.766 4.512 40.164 -2.342 0.239 2.957 6.536 4.007 40.497 7 AA_G49U50:G64C65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 51 1_555 A G 65 1_555 A C 52 1_555 A G 64 1_555 0.288 -1.484 2.925 4.286 6.766 29.062 -4.030 0.190 2.538 13.170 -8.342 30.123 8 AA_U50C51:G63G64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A C 52 1_555 A G 64 1_555 A G 53 1_555 A C 63 1_555 0.019 -2.054 3.546 2.100 8.905 23.616 -7.205 0.550 2.602 20.786 -4.901 25.303 9 AA_C51G52:C62G63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 53 1_555 A C 63 1_555 A G 54 1_555 A C 62 1_555 0.687 -1.960 3.379 -1.565 0.565 35.835 -3.265 -1.346 3.317 0.918 2.542 35.872 10 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 54 1_555 A C 62 1_555 A 5MU 55 1_555 A A 59 1_555 -1.850 -2.351 3.168 4.613 -0.763 91.522 -1.625 1.376 3.109 -0.533 -3.217 91.615 11 AA_G535MU54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 5MU 55 1_555 A A 59 1_555 A PSU 56 1_555 A G 19 1_555 2.103 -1.813 3.309 12.315 1.258 38.801 -2.763 -1.520 3.723 1.837 -17.988 40.655 12 AA_5MU54PSU55:G18A58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A A 39 1_555 A OMC 33 1_555 A C 40 1_555 A G 32 1_555 0.115 -1.452 3.382 -1.391 -1.589 42.125 -1.848 -0.309 3.426 -2.209 1.933 42.176 13 AA_A38C39:G31OMC32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A C 40 1_555 A G 32 1_555 A C 41 1_555 A G 31 1_555 0.179 -2.000 3.501 2.098 4.859 34.849 -4.049 0.026 3.207 8.055 -3.478 35.237 14 AA_C39C40:G30G31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A C 41 1_555 A G 31 1_555 A C 42 1_555 A G 30 1_555 -0.516 -1.998 3.449 -0.592 6.177 31.023 -4.806 0.837 3.014 11.405 1.093 31.622 15 AA_C40C41:G29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A C 42 1_555 A G 30 1_555 A G 43 1_555 A C 29 1_555 1.137 -2.114 3.349 1.383 10.368 24.720 -6.990 -2.128 2.346 22.948 -3.061 26.810 16 AA_C41G42:C28G29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 43 1_555 A C 29 1_555 A A 44 1_555 A U 28 1_555 0.327 -1.538 3.268 0.345 2.865 38.182 -2.698 -0.457 3.151 4.372 -0.526 38.287 17 AA_G42A43:U27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A A 44 1_555 A U 28 1_555 A A 45 1_555 A G 27 1_555 -0.562 -1.496 3.392 7.871 3.163 38.488 -2.597 1.770 3.095 4.729 -11.766 39.377 18 AA_A43A44:G26U27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 45 1_555 A G 27 1_555 A G 10 1_555 A C 26 1_555 -2.866 -2.751 3.149 17.337 13.993 55.713 -3.296 3.537 1.598 14.352 -17.782 59.669 19 AA_A44G10:C25G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A C 26 1_555 A A 11 1_555 A U 25 1_555 -1.046 -2.005 3.259 -8.926 5.124 34.790 -3.939 0.436 3.108 8.347 14.539 36.235 20 AA_G10A11:U24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A A 11 1_555 A U 25 1_555 A G 12 1_555 A C 24 1_555 0.180 -1.926 3.289 7.523 4.500 28.901 -4.587 1.139 2.916 8.765 -14.653 30.174 21 AA_A11G12:C23U24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A G 12 1_555 A C 24 1_555 A C 13 1_555 A G 23 1_555 1.308 -2.143 3.219 3.248 2.819 28.885 -4.849 -1.906 3.126 5.613 -6.466 29.197 22 AA_G12C13:G22C23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 23 1_555 A A 14 1_555 A 4SU 8 1_555 -0.427 -1.195 3.269 4.889 -2.782 65.805 -0.984 0.590 3.276 -2.556 -4.491 66.018 23 AA_C13A14:4SU8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A 4SU 8 1_555 A G 15 1_555 A C 49 1_555 1.752 -3.084 2.666 -4.816 6.306 -69.467 2.497 1.381 3.002 -5.516 -4.213 -69.863 24 AA_A14G15:C484SU8_AA A 14 ? A 8 ? A 15 ? A 48 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal CNRS France UMR7654 1 'Ecole polytechnique' France UMR7654 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CW5 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5L4O _atom_sites.fract_transf_matrix[1][1] 0.028450 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007012 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004948 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_