HEADER HYDROLASE 30-MAY-16 5L6N TITLE DISULFATED MADANIN-THROMBIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTHROMBIN; COMPND 8 CHAIN: H; COMPND 9 SYNONYM: COAGULATION FACTOR II; COMPND 10 EC: 3.4.21.5; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: THROMBIN INHIBITOR MADANIN 1; COMPND 13 CHAIN: I; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HAEMAPHYSALIS LONGICORNIS; SOURCE 12 ORGANISM_COMMON: BUSH TICK; SOURCE 13 ORGANISM_TAXID: 44386 KEYWDS HYDROLASE, ANTICOAGULANT SULFOTYROSINE EXPDTA X-RAY DIFFRACTION AUTHOR J.RIPOLL-ROZADA,P.J.B.PEREIRA REVDAT 4 10-JAN-24 5L6N 1 HETSYN REVDAT 3 29-JUL-20 5L6N 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 06-SEP-17 5L6N 1 JRNL REVDAT 1 29-MAR-17 5L6N 0 JRNL AUTH R.E.THOMPSON,X.LIU,J.RIPOLL-ROZADA,N.ALONSO-GARCIA, JRNL AUTH 2 B.L.PARKER,P.J.B.PEREIRA,R.J.PAYNE JRNL TITL TYROSINE SULFATION MODULATES ACTIVITY OF TICK-DERIVED JRNL TITL 2 THROMBIN INHIBITORS. JRNL REF NAT CHEM V. 9 909 2017 JRNL REFN ESSN 1755-4349 JRNL PMID 28837178 JRNL DOI 10.1038/NCHEM.2744 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 41712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7124 - 4.0104 0.99 2819 137 0.1433 0.1599 REMARK 3 2 4.0104 - 3.1836 0.99 2694 145 0.1432 0.1779 REMARK 3 3 3.1836 - 2.7813 1.00 2659 152 0.1704 0.1966 REMARK 3 4 2.7813 - 2.5271 1.00 2671 148 0.1666 0.2082 REMARK 3 5 2.5271 - 2.3460 1.00 2626 145 0.1687 0.1890 REMARK 3 6 2.3460 - 2.2077 1.00 2672 127 0.1662 0.2019 REMARK 3 7 2.2077 - 2.0971 1.00 2638 140 0.1578 0.1889 REMARK 3 8 2.0971 - 2.0058 1.00 2618 134 0.1749 0.2358 REMARK 3 9 2.0058 - 1.9286 1.00 2610 146 0.1778 0.2162 REMARK 3 10 1.9286 - 1.8621 1.00 2604 143 0.1880 0.2288 REMARK 3 11 1.8621 - 1.8038 1.00 2634 150 0.2064 0.2633 REMARK 3 12 1.8038 - 1.7523 1.00 2575 148 0.2244 0.2704 REMARK 3 13 1.7523 - 1.7061 1.00 2600 157 0.2451 0.2833 REMARK 3 14 1.7061 - 1.6645 1.00 2584 144 0.2553 0.2814 REMARK 3 15 1.6645 - 1.6267 0.97 2564 128 0.2692 0.2589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2586 REMARK 3 ANGLE : 0.898 3496 REMARK 3 CHIRALITY : 0.058 365 REMARK 3 PLANARITY : 0.006 452 REMARK 3 DIHEDRAL : 22.438 1559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 291 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1443 10.9252 30.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1909 REMARK 3 T33: 0.2044 T12: 0.0166 REMARK 3 T13: 0.0605 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.1484 L22: 7.1908 REMARK 3 L33: 2.0509 L12: 1.1177 REMARK 3 L13: -1.7527 L23: -1.9363 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.2736 S13: 0.0848 REMARK 3 S21: 0.2003 S22: 0.1224 S23: 0.5619 REMARK 3 S31: 0.0856 S32: -0.6069 S33: -0.1070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 300 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4133 12.7435 37.4586 REMARK 3 T TENSOR REMARK 3 T11: 0.2965 T22: 0.2649 REMARK 3 T33: 0.1435 T12: -0.0211 REMARK 3 T13: 0.0460 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 2.4605 L22: 3.9777 REMARK 3 L33: 5.8779 L12: -0.5141 REMARK 3 L13: -2.0635 L23: -0.5204 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.9024 S13: 0.4290 REMARK 3 S21: 0.5414 S22: -0.0228 S23: 0.1759 REMARK 3 S31: -0.4205 S32: -0.1391 S33: 0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 309 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2830 21.4049 31.2157 REMARK 3 T TENSOR REMARK 3 T11: 0.4139 T22: 0.2755 REMARK 3 T33: 0.3437 T12: -0.0765 REMARK 3 T13: 0.0545 T23: -0.1263 REMARK 3 L TENSOR REMARK 3 L11: 6.7927 L22: 2.5788 REMARK 3 L33: 2.6966 L12: 0.8894 REMARK 3 L13: 2.7072 L23: -1.4145 REMARK 3 S TENSOR REMARK 3 S11: 0.3070 S12: -0.5873 S13: 0.7870 REMARK 3 S21: 0.4785 S22: -0.2339 S23: -0.4633 REMARK 3 S31: -1.2262 S32: 0.6651 S33: -0.2177 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 321 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4717 -2.2190 17.6374 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1427 REMARK 3 T33: 0.1752 T12: 0.0081 REMARK 3 T13: 0.0209 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.7054 L22: 1.4123 REMARK 3 L33: 2.3520 L12: 0.3719 REMARK 3 L13: -0.3586 L23: 0.1207 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.0876 S13: -0.1983 REMARK 3 S21: -0.0449 S22: 0.0046 S23: -0.0991 REMARK 3 S31: 0.3113 S32: 0.0581 S33: 0.0518 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 376 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3715 -8.3275 26.0732 REMARK 3 T TENSOR REMARK 3 T11: 0.2932 T22: 0.1120 REMARK 3 T33: 0.2232 T12: -0.0195 REMARK 3 T13: 0.0488 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.9639 L22: 2.2446 REMARK 3 L33: 6.0072 L12: 0.0075 REMARK 3 L13: -0.8084 L23: 1.0887 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: -0.0961 S13: -0.2132 REMARK 3 S21: 0.1047 S22: -0.0800 S23: 0.0593 REMARK 3 S31: 0.7007 S32: -0.1293 S33: 0.1363 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 397 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9472 2.5520 12.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1666 REMARK 3 T33: 0.1389 T12: -0.0026 REMARK 3 T13: -0.0112 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.0113 L22: 2.0245 REMARK 3 L33: 2.6198 L12: 0.2427 REMARK 3 L13: -0.4436 L23: -0.1201 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.2396 S13: -0.0505 REMARK 3 S21: -0.1918 S22: -0.0369 S23: 0.1265 REMARK 3 S31: 0.1283 S32: -0.2247 S33: 0.0703 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 443 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9478 19.0909 20.9891 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1464 REMARK 3 T33: 0.1834 T12: 0.0002 REMARK 3 T13: 0.0549 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.8985 L22: 2.9767 REMARK 3 L33: 1.2076 L12: -0.8542 REMARK 3 L13: -0.1934 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: 0.1179 S13: 0.4381 REMARK 3 S21: -0.1647 S22: -0.0679 S23: -0.2251 REMARK 3 S31: -0.3292 S32: 0.0059 S33: -0.0702 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 461 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1488 -4.0598 26.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.3070 REMARK 3 T33: 0.3153 T12: 0.0819 REMARK 3 T13: 0.0485 T23: 0.0691 REMARK 3 L TENSOR REMARK 3 L11: 1.6080 L22: 3.0240 REMARK 3 L33: 4.4243 L12: 0.1975 REMARK 3 L13: -2.6139 L23: -1.0053 REMARK 3 S TENSOR REMARK 3 S11: -0.6372 S12: -0.6538 S13: -1.1005 REMARK 3 S21: 0.0172 S22: -0.1066 S23: -0.3350 REMARK 3 S31: 0.5957 S32: 0.9174 S33: 0.6293 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 481 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3609 12.1312 18.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.1488 REMARK 3 T33: 0.1816 T12: -0.0243 REMARK 3 T13: 0.0352 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.3236 L22: 1.5434 REMARK 3 L33: 1.9118 L12: -0.1842 REMARK 3 L13: -0.5921 L23: 0.3839 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: 0.0519 S13: 0.2020 REMARK 3 S21: -0.0842 S22: 0.0293 S23: -0.2528 REMARK 3 S31: -0.1929 S32: 0.3096 S33: -0.0821 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 564 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9327 10.2992 7.7086 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.3981 REMARK 3 T33: 0.2672 T12: 0.0752 REMARK 3 T13: -0.0510 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.1140 L22: 7.3210 REMARK 3 L33: 5.7224 L12: 3.7284 REMARK 3 L13: -0.6645 L23: 0.4390 REMARK 3 S TENSOR REMARK 3 S11: -0.1590 S12: 0.7037 S13: 0.5045 REMARK 3 S21: -0.4876 S22: 0.2150 S23: 0.8019 REMARK 3 S31: -0.0219 S32: -0.9993 S33: 0.0055 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 31 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4632 15.9786 1.0343 REMARK 3 T TENSOR REMARK 3 T11: 0.6446 T22: 0.6433 REMARK 3 T33: 0.4601 T12: 0.0675 REMARK 3 T13: -0.1107 T23: 0.1541 REMARK 3 L TENSOR REMARK 3 L11: 2.2308 L22: 2.4736 REMARK 3 L33: 2.2407 L12: 1.1274 REMARK 3 L13: -0.5154 L23: 1.7482 REMARK 3 S TENSOR REMARK 3 S11: 0.2186 S12: 0.6132 S13: 0.0721 REMARK 3 S21: -1.7230 S22: -0.3449 S23: 0.9088 REMARK 3 S31: -0.4813 S32: -1.6205 S33: 0.0367 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 38 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6642 8.1645 -7.0019 REMARK 3 T TENSOR REMARK 3 T11: 0.9620 T22: 1.2521 REMARK 3 T33: 0.5410 T12: 0.4365 REMARK 3 T13: -0.0575 T23: -0.1662 REMARK 3 L TENSOR REMARK 3 L11: 2.4687 L22: 4.9927 REMARK 3 L33: 2.4982 L12: 0.4204 REMARK 3 L13: -2.2628 L23: 0.7876 REMARK 3 S TENSOR REMARK 3 S11: 0.2229 S12: 0.5846 S13: 0.1178 REMARK 3 S21: -0.8325 S22: -0.3194 S23: 0.5103 REMARK 3 S31: -0.7528 S32: -0.8678 S33: 0.0960 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7713 3.7594 2.2814 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.3234 REMARK 3 T33: 0.2251 T12: -0.0347 REMARK 3 T13: 0.0335 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.1611 L22: 1.1182 REMARK 3 L33: 3.4348 L12: 1.2734 REMARK 3 L13: -1.4039 L23: -0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.3889 S12: 0.4978 S13: -0.1390 REMARK 3 S21: -0.4663 S22: 0.2024 S23: -0.0710 REMARK 3 S31: 0.1807 S32: 0.1832 S33: 0.2032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.627 REMARK 200 RESOLUTION RANGE LOW (A) : 44.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U69 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT BUFFER PH 7.0, 30% (W/V) PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.27300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.68450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.11900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.68450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.27300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.11900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 285 REMARK 465 PHE L 286 REMARK 465 GLY L 287 REMARK 465 SER L 288 REMARK 465 GLY L 289 REMARK 465 GLU L 290 REMARK 465 ARG L 320 REMARK 465 TRP H 468 REMARK 465 THR H 469 REMARK 465 ALA H 470 REMARK 465 ASN H 471 REMARK 465 VAL H 472 REMARK 465 VAL I 20 REMARK 465 LYS I 21 REMARK 465 VAL I 22 REMARK 465 GLN I 23 REMARK 465 LYS I 24 REMARK 465 ARG I 25 REMARK 465 THR I 26 REMARK 465 ASP I 27 REMARK 465 GLY I 28 REMARK 465 ASP I 29 REMARK 465 ALA I 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 299 -87.31 -129.76 REMARK 500 SER H 354 -169.44 -160.85 REMARK 500 TYR H 367 85.27 -151.12 REMARK 500 ASN H 373 77.93 -154.60 REMARK 500 ILE H 395 -62.91 -129.02 REMARK 500 GLU H 414 -69.97 -131.51 REMARK 500 LYS H 474 -83.22 -155.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 553 O REMARK 620 2 LYS H 556 O 93.6 REMARK 620 3 HOH H 767 O 158.4 69.0 REMARK 620 4 HOH H 796 O 107.7 158.3 89.4 REMARK 620 5 HOH H 819 O 84.3 96.9 85.2 81.9 REMARK 620 6 HOH H 844 O 98.9 80.0 90.8 99.8 175.6 REMARK 620 N 1 2 3 4 5 DBREF 5L6N L 285 320 UNP P00734 THRB_HUMAN 328 363 DBREF 5L6N H 321 579 UNP P00734 THRB_HUMAN 364 622 DBREF 5L6N I 20 54 UNP Q86FP9 Q86FP9_HAELO 39 73 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 35 VAL LYS VAL GLN LYS ARG THR ASP GLY ASP ALA ASP TYS SEQRES 2 I 35 ASP GLU TYS GLU GLU ASP GLY THR THR PRO THR PRO ASP SEQRES 3 I 35 PRO THR ALA PRO THR ALA LYS PRO ARG MODRES 5L6N TYS I 32 TYR MODIFIED RESIDUE MODRES 5L6N TYS I 35 TYR MODIFIED RESIDUE HET TYS I 32 16 HET TYS I 35 16 HET NAG H 601 14 HET NA H 602 1 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 TYS 2(C9 H11 N O6 S) FORMUL 4 NAG C8 H15 N O6 FORMUL 5 NA NA 1+ FORMUL 6 HOH *233(H2 O) HELIX 1 AA1 PHE L 299 SER L 303 5 5 HELIX 2 AA2 THR L 308 GLY L 319 1 12 HELIX 3 AA3 ALA H 361 CYS H 364 5 4 HELIX 4 AA4 PRO H 368 ASP H 371 5 4 HELIX 5 AA5 THR H 375 ASN H 377 5 3 HELIX 6 AA6 ASP H 442 LEU H 450 1 9 HELIX 7 AA7 GLU H 489 SER H 496 1 8 HELIX 8 AA8 LYS H 511 GLY H 515 5 5 HELIX 9 AA9 LEU H 566 GLY H 578 1 13 SHEET 1 AA1 7 SER H 325 ASP H 326 0 SHEET 2 AA1 7 GLN H 481 PRO H 486 -1 O VAL H 482 N SER H 325 SHEET 3 AA1 7 LYS H 455 GLY H 460 -1 N VAL H 458 O VAL H 483 SHEET 4 AA1 7 PRO H 528 LYS H 532 -1 O VAL H 530 N ARG H 457 SHEET 5 AA1 7 TRP H 539 TRP H 547 -1 O TYR H 540 N MET H 531 SHEET 6 AA1 7 GLY H 558 HIS H 562 -1 O PHE H 559 N TRP H 547 SHEET 7 AA1 7 MET H 505 ALA H 508 -1 N PHE H 506 O TYR H 560 SHEET 1 AA2 7 GLN H 335 ARG H 340 0 SHEET 2 AA2 7 GLU H 345 LEU H 352 -1 O GLU H 345 N ARG H 340 SHEET 3 AA2 7 TRP H 357 THR H 360 -1 O LEU H 359 N SER H 351 SHEET 4 AA2 7 ALA H 421 LEU H 425 -1 O MET H 423 N VAL H 358 SHEET 5 AA2 7 LYS H 397 ILE H 406 -1 N GLU H 402 O LYS H 424 SHEET 6 AA2 7 LEU H 379 ILE H 383 -1 N ILE H 383 O LYS H 397 SHEET 7 AA2 7 GLN H 335 ARG H 340 -1 N PHE H 339 O LEU H 380 SHEET 1 AA3 2 LEU H 366 TYR H 367 0 SHEET 2 AA3 2 LYS H 372 ASN H 373 -1 O LYS H 372 N TYR H 367 SSBOND 1 CYS L 293 CYS H 439 1555 1555 2.05 SSBOND 2 CYS H 348 CYS H 364 1555 1555 2.06 SSBOND 3 CYS H 493 CYS H 507 1555 1555 2.03 SSBOND 4 CYS H 521 CYS H 551 1555 1555 2.07 LINK ND2 ASN H 373 C1 NAG H 601 1555 1555 1.44 LINK C ASP I 31 N TYS I 32 1555 1555 1.33 LINK C TYS I 32 N ASP I 33 1555 1555 1.33 LINK C GLU I 34 N TYS I 35 1555 1555 1.33 LINK C TYS I 35 N GLU I 36 1555 1555 1.33 LINK O ARG H 553 NA NA H 602 1555 1555 2.30 LINK O LYS H 556 NA NA H 602 1555 1555 2.40 LINK NA NA H 602 O HOH H 767 1555 1555 2.47 LINK NA NA H 602 O HOH H 796 1555 1555 2.42 LINK NA NA H 602 O HOH H 819 1555 1555 2.73 LINK NA NA H 602 O HOH H 844 1555 1555 2.31 CISPEP 1 SER H 342 PRO H 343 0 -2.49 CRYST1 44.546 80.238 91.369 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010945 0.00000