HEADER LIGASE 03-JUN-16 5L7P TITLE IN SILICO-POWERED SPECIFIC INCORPORATION OF PHOTOCAGED DOPA AT TITLE 2 MULTIPLE PROTEIN SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 GENE: TYRS, MJ0389; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYRRS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HAUF,F.RICHTER,T.SCHNEIDER,B.M.MARTINS,T.BAUMANN,P.DURKIN,H.DOBBEK, AUTHOR 2 A.MOEGLICH,N.BUDISA REVDAT 3 10-JAN-24 5L7P 1 LINK REVDAT 2 27-SEP-17 5L7P 1 JRNL REVDAT 1 13-SEP-17 5L7P 0 JRNL AUTH M.HAUF,F.RICHTER,T.SCHNEIDER,T.FAIDT,B.M.MARTINS,T.BAUMANN, JRNL AUTH 2 P.DURKIN,H.DOBBEK,K.JACOBS,A.MOGLICH,N.BUDISA JRNL TITL PHOTOACTIVATABLE MUSSEL-BASED UNDERWATER ADHESIVE PROTEINS JRNL TITL 2 BY AN EXPANDED GENETIC CODE. JRNL REF CHEMBIOCHEM V. 18 1819 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28650092 JRNL DOI 10.1002/CBIC.201700327 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1168: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.410 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2464 - 4.3485 1.00 4113 145 0.1707 0.1763 REMARK 3 2 4.3485 - 3.4520 1.00 3943 139 0.1517 0.1889 REMARK 3 3 3.4520 - 3.0158 1.00 3903 138 0.1826 0.2119 REMARK 3 4 3.0158 - 2.7401 1.00 3882 138 0.1873 0.2388 REMARK 3 5 2.7401 - 2.5437 1.00 3862 136 0.1917 0.2674 REMARK 3 6 2.5437 - 2.3937 1.00 3850 136 0.1790 0.2364 REMARK 3 7 2.3937 - 2.2739 1.00 3852 136 0.1768 0.2153 REMARK 3 8 2.2739 - 2.1749 1.00 3826 136 0.1826 0.2790 REMARK 3 9 2.1749 - 2.0912 1.00 3828 135 0.1939 0.2503 REMARK 3 10 2.0912 - 2.0190 1.00 3842 136 0.2135 0.2917 REMARK 3 11 2.0190 - 1.9559 1.00 3798 133 0.2201 0.2878 REMARK 3 12 1.9559 - 1.9000 1.00 3839 136 0.2400 0.3080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5005 REMARK 3 ANGLE : 1.189 6719 REMARK 3 CHIRALITY : 0.062 742 REMARK 3 PLANARITY : 0.007 860 REMARK 3 DIHEDRAL : 14.173 3137 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.235 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 25.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2 0.1 M HEPES PH 7.5 53% PEG REMARK 280 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.75350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.94150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.13750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.94150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.75350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.13750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.50700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 39.13750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.94150 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 39.13750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.94150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 139 REMARK 465 GLU A 140 REMARK 465 ASP A 141 REMARK 465 GLU A 142 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 172 HZ1 LYS A 204 1.44 REMARK 500 HH21 ARG A 9 OD1 ASP A 54 1.53 REMARK 500 HE ARG A 286 O HOH A 502 1.55 REMARK 500 HE ARG A 303 O HOH A 504 1.56 REMARK 500 H LYS A 186 O HOH A 509 1.57 REMARK 500 O HOH A 678 O HOH A 681 2.06 REMARK 500 O HOH B 614 O HOH B 653 2.14 REMARK 500 O HOH B 516 O HOH B 618 2.15 REMARK 500 O HOH A 670 O HOH A 680 2.17 REMARK 500 OE1 GLU A 259 O HOH A 501 2.18 REMARK 500 OE2 GLU A 172 NZ LYS A 204 2.18 REMARK 500 OE1 GLN B 56 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 237 HH12 ARG A 286 4545 1.40 REMARK 500 HZ2 LYS A 186 OXT LEU B 306 1655 1.59 REMARK 500 O HOH A 668 O HOH B 516 3455 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 303 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 303 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 303 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 75 19.89 82.86 REMARK 500 CYS A 231 66.09 -168.25 REMARK 500 GLN B 75 33.09 73.63 REMARK 500 ASN B 143 78.95 -119.64 REMARK 500 CYS B 231 69.91 -162.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 681 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 221 OE1 REMARK 620 2 GLU A 221 OE2 46.8 REMARK 620 3 HOH A 541 O 96.8 60.4 REMARK 620 4 HOH A 570 O 95.1 124.3 95.7 REMARK 620 5 HOH A 653 O 155.1 158.0 102.2 67.4 REMARK 620 6 HOH B 603 O 113.9 73.5 69.1 148.2 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BUU B 401 DBREF 5L7P A 1 306 UNP Q57834 SYY_METJA 1 306 DBREF 5L7P B 1 306 UNP Q57834 SYY_METJA 1 306 SEQADV 5L7P MET A -11 UNP Q57834 INITIATING METHIONINE SEQADV 5L7P ARG A -10 UNP Q57834 EXPRESSION TAG SEQADV 5L7P GLY A -9 UNP Q57834 EXPRESSION TAG SEQADV 5L7P SER A -8 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -7 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -6 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -5 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -4 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -3 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS A -2 UNP Q57834 EXPRESSION TAG SEQADV 5L7P GLY A -1 UNP Q57834 EXPRESSION TAG SEQADV 5L7P SER A 0 UNP Q57834 EXPRESSION TAG SEQADV 5L7P ALA A 32 UNP Q57834 TYR 32 ENGINEERED MUTATION SEQADV 5L7P ILE A 65 UNP Q57834 LEU 65 ENGINEERED MUTATION SEQADV 5L7P ALA A 70 UNP Q57834 HIS 70 ENGINEERED MUTATION SEQADV 5L7P ALA A 109 UNP Q57834 GLN 109 ENGINEERED MUTATION SEQADV 5L7P ALA A 158 UNP Q57834 ASP 158 ENGINEERED MUTATION SEQADV 5L7P ALA A 159 UNP Q57834 ILE 159 ENGINEERED MUTATION SEQADV 5L7P MET A 162 UNP Q57834 LEU 162 ENGINEERED MUTATION SEQADV 5L7P ASN A 167 UNP Q57834 ALA 167 ENGINEERED MUTATION SEQADV 5L7P GLN A 180 UNP Q57834 ALA 180 ENGINEERED MUTATION SEQADV 5L7P ARG A 286 UNP Q57834 ASP 286 ENGINEERED MUTATION SEQADV 5L7P MET B -11 UNP Q57834 INITIATING METHIONINE SEQADV 5L7P ARG B -10 UNP Q57834 EXPRESSION TAG SEQADV 5L7P GLY B -9 UNP Q57834 EXPRESSION TAG SEQADV 5L7P SER B -8 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -7 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -6 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -5 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -4 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -3 UNP Q57834 EXPRESSION TAG SEQADV 5L7P HIS B -2 UNP Q57834 EXPRESSION TAG SEQADV 5L7P GLY B -1 UNP Q57834 EXPRESSION TAG SEQADV 5L7P SER B 0 UNP Q57834 EXPRESSION TAG SEQADV 5L7P ALA B 32 UNP Q57834 TYR 32 ENGINEERED MUTATION SEQADV 5L7P ILE B 65 UNP Q57834 LEU 65 ENGINEERED MUTATION SEQADV 5L7P ALA B 70 UNP Q57834 HIS 70 ENGINEERED MUTATION SEQADV 5L7P ALA B 109 UNP Q57834 GLN 109 ENGINEERED MUTATION SEQADV 5L7P ALA B 158 UNP Q57834 ASP 158 ENGINEERED MUTATION SEQADV 5L7P ALA B 159 UNP Q57834 ILE 159 ENGINEERED MUTATION SEQADV 5L7P MET B 162 UNP Q57834 LEU 162 ENGINEERED MUTATION SEQADV 5L7P ASN B 167 UNP Q57834 ALA 167 ENGINEERED MUTATION SEQADV 5L7P GLN B 180 UNP Q57834 ALA 180 ENGINEERED MUTATION SEQADV 5L7P ARG B 286 UNP Q57834 ASP 286 ENGINEERED MUTATION SEQRES 1 A 318 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 318 ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU ILE SEQRES 3 A 318 ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS ASP SEQRES 4 A 318 GLU LYS SER ALA ALA ILE GLY PHE GLU PRO SER GLY LYS SEQRES 5 A 318 ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET ILE SEQRES 6 A 318 ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE ILE LEU SEQRES 7 A 318 ALA ASP LEU ALA ALA TYR LEU ASN GLN LYS GLY GLU LEU SEQRES 8 A 318 ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS VAL SEQRES 9 A 318 PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR GLY SEQRES 10 A 318 SER GLU PHE ALA LEU ASP LYS ASP TYR THR LEU ASN VAL SEQRES 11 A 318 TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA ARG SEQRES 12 A 318 ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN PRO SEQRES 13 A 318 LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL ASN SEQRES 14 A 318 ALA ALA HIS TYR MET GLY VAL ASP VAL ASN VAL GLY GLY SEQRES 15 A 318 MET GLU GLN ARG LYS ILE HIS MET LEU GLN ARG GLU LEU SEQRES 16 A 318 LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL LEU SEQRES 17 A 318 THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER LYS SEQRES 18 A 318 GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU ILE SEQRES 19 A 318 ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY VAL SEQRES 20 A 318 VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR PHE SEQRES 21 A 318 LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS PHE SEQRES 22 A 318 GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU GLU SEQRES 23 A 318 SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ARG LEU SEQRES 24 A 318 LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU GLU SEQRES 25 A 318 PRO ILE ARG LYS ARG LEU SEQRES 1 B 318 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 318 ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU ILE SEQRES 3 B 318 ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS ASP SEQRES 4 B 318 GLU LYS SER ALA ALA ILE GLY PHE GLU PRO SER GLY LYS SEQRES 5 B 318 ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET ILE SEQRES 6 B 318 ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE ILE LEU SEQRES 7 B 318 ALA ASP LEU ALA ALA TYR LEU ASN GLN LYS GLY GLU LEU SEQRES 8 B 318 ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS VAL SEQRES 9 B 318 PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR GLY SEQRES 10 B 318 SER GLU PHE ALA LEU ASP LYS ASP TYR THR LEU ASN VAL SEQRES 11 B 318 TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA ARG SEQRES 12 B 318 ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN PRO SEQRES 13 B 318 LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL ASN SEQRES 14 B 318 ALA ALA HIS TYR MET GLY VAL ASP VAL ASN VAL GLY GLY SEQRES 15 B 318 MET GLU GLN ARG LYS ILE HIS MET LEU GLN ARG GLU LEU SEQRES 16 B 318 LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL LEU SEQRES 17 B 318 THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER LYS SEQRES 18 B 318 GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU ILE SEQRES 19 B 318 ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY VAL SEQRES 20 B 318 VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR PHE SEQRES 21 B 318 LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS PHE SEQRES 22 B 318 GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU GLU SEQRES 23 B 318 SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ARG LEU SEQRES 24 B 318 LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU GLU SEQRES 25 B 318 PRO ILE ARG LYS ARG LEU HET 1PE A 401 38 HET CA A 402 1 HET CL A 403 1 HET BUU B 401 39 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM BUU (2~{S})-2-AZANYL-3-[3-[(2-NITROPHENYL)METHOXY]-4- HETNAM 2 BUU OXIDANYL-PHENYL]PROPANOIC ACID HETSYN 1PE PEG400 FORMUL 3 1PE C10 H22 O6 FORMUL 4 CA CA 2+ FORMUL 5 CL CL 1- FORMUL 6 BUU C16 H16 N2 O6 FORMUL 7 HOH *341(H2 O) HELIX 1 AA1 ASP A 2 ARG A 9 1 8 HELIX 2 AA2 SER A 16 LEU A 24 1 9 HELIX 3 AA3 HIS A 42 ALA A 58 1 17 HELIX 4 AA4 ALA A 67 ASN A 74 1 8 HELIX 5 AA5 GLU A 78 GLY A 97 1 20 HELIX 6 AA6 SER A 106 PHE A 108 5 3 HELIX 7 AA7 ASP A 111 THR A 125 1 15 HELIX 8 AA8 THR A 126 MET A 134 1 9 HELIX 9 AA9 VAL A 146 GLY A 163 1 18 HELIX 10 AB1 GLN A 173 LEU A 184 1 12 HELIX 11 AB2 SER A 218 LYS A 228 1 11 HELIX 12 AB3 ASN A 239 PHE A 248 1 10 HELIX 13 AB4 PRO A 258 GLY A 262 5 5 HELIX 14 AB5 SER A 269 ASN A 279 1 11 HELIX 15 AB6 HIS A 283 LEU A 306 1 24 HELIX 16 AB7 ASP B 2 ARG B 9 1 8 HELIX 17 AB8 SER B 16 LYS B 25 1 10 HELIX 18 AB9 HIS B 42 ALA B 58 1 17 HELIX 19 AC1 ALA B 67 ASN B 74 1 8 HELIX 20 AC2 GLU B 78 MET B 96 1 19 HELIX 21 AC3 SER B 106 PHE B 108 5 3 HELIX 22 AC4 ASP B 111 LEU B 123 1 13 HELIX 23 AC5 THR B 126 MET B 134 1 9 HELIX 24 AC6 VAL B 146 GLY B 163 1 18 HELIX 25 AC7 GLN B 173 LEU B 184 1 12 HELIX 26 AC8 SER B 218 LYS B 228 1 11 HELIX 27 AC9 ASN B 239 PHE B 248 1 10 HELIX 28 AD1 SER B 269 ASN B 279 1 11 HELIX 29 AD2 HIS B 283 LEU B 306 1 24 SHEET 1 AA1 6 GLU A 13 ILE A 15 0 SHEET 2 AA1 6 VAL A 189 ASN A 193 -1 O CYS A 190 N ILE A 15 SHEET 3 AA1 6 VAL A 166 GLY A 170 1 N ASN A 167 O VAL A 189 SHEET 4 AA1 6 LYS A 29 PHE A 35 1 N ALA A 32 O VAL A 166 SHEET 5 AA1 6 PHE A 60 LEU A 66 1 O ILE A 65 N ILE A 33 SHEET 6 AA1 6 LYS A 101 TYR A 104 1 O VAL A 103 N LEU A 66 SHEET 1 AA2 2 LEU A 253 ILE A 255 0 SHEET 2 AA2 2 LEU A 265 VAL A 267 -1 O VAL A 267 N LEU A 253 SHEET 1 AA3 6 GLU B 13 ILE B 15 0 SHEET 2 AA3 6 VAL B 189 ASN B 193 -1 O CYS B 190 N ILE B 15 SHEET 3 AA3 6 VAL B 166 GLY B 170 1 N ASN B 167 O VAL B 189 SHEET 4 AA3 6 SER B 30 PHE B 35 1 N ALA B 32 O VAL B 168 SHEET 5 AA3 6 ASP B 61 LEU B 66 1 O ILE B 65 N ILE B 33 SHEET 6 AA3 6 LYS B 101 TYR B 104 1 O VAL B 103 N LEU B 66 SHEET 1 AA4 2 LEU B 253 ILE B 255 0 SHEET 2 AA4 2 LEU B 265 VAL B 267 -1 O VAL B 267 N LEU B 253 LINK OE1 GLU A 221 CA CA A 402 1555 1555 2.72 LINK OE2 GLU A 221 CA CA A 402 1555 1555 2.81 LINK CA CA A 402 O HOH A 541 1555 1555 2.27 LINK CA CA A 402 O HOH A 570 1555 1555 2.50 LINK CA CA A 402 O HOH A 653 1555 1555 2.35 LINK CA CA A 402 O HOH B 603 1555 3455 2.74 CISPEP 1 ILE A 15 SER A 16 0 -6.56 CISPEP 2 TYR A 251 PRO A 252 0 2.42 CISPEP 3 ILE B 15 SER B 16 0 -1.49 CISPEP 4 TYR B 251 PRO B 252 0 2.66 SITE 1 AC1 7 LEU A 69 LEU A 73 ASN A 74 ALA A 147 SITE 2 AC1 7 MET A 154 GLN A 155 CL A 403 SITE 1 AC2 5 GLU A 221 HOH A 541 HOH A 570 HOH A 653 SITE 2 AC2 5 HOH B 603 SITE 1 AC3 6 ALA A 67 ASP A 68 LEU A 69 ALA A 70 SITE 2 AC3 6 GLY A 105 1PE A 401 SITE 1 AC4 13 GLY B 34 GLU B 36 ILE B 65 ALA B 67 SITE 2 AC4 13 LEU B 69 ALA B 70 GLY B 105 ALA B 109 SITE 3 AC4 13 TYR B 151 MET B 154 GLN B 155 ALA B 158 SITE 4 AC4 13 GLN B 173 CRYST1 55.507 78.275 137.883 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007253 0.00000