HEADER RNA BINDING PROTEIN 05-JUN-16 5L80 TITLE STRUCTURE OF EXUPERANTIA EXO-LIKE AND SAM-LIKE DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL PROTEIN EXUPERANTIA,MATERNAL PROTEIN EXUPERANTIA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: EXU, CG8994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXONUCLEASE, RNA, PSEUDO NUCLEASE, SAM DOMAIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.LAZZARETTI,K.VEITH,F.BONO REVDAT 4 10-JAN-24 5L80 1 REMARK REVDAT 3 17-AUG-16 5L80 1 JRNL REVDAT 2 13-JUL-16 5L80 1 JRNL REVDAT 1 06-JUL-16 5L80 0 JRNL AUTH D.LAZZARETTI,K.VEITH,K.KRAMER,C.BASQUIN,H.URLAUB,U.IRION, JRNL AUTH 2 F.BONO JRNL TITL THE BICOID MRNA LOCALIZATION FACTOR EXUPERANTIA IS AN JRNL TITL 2 RNA-BINDING PSEUDONUCLEASE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 705 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27376588 JRNL DOI 10.1038/NSMB.3254 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3000 - 5.3540 1.00 2698 143 0.2479 0.2655 REMARK 3 2 5.3540 - 4.2505 1.00 2652 139 0.2243 0.2453 REMARK 3 3 4.2505 - 3.7135 1.00 2611 138 0.2335 0.2740 REMARK 3 4 3.7135 - 3.3741 1.00 2622 138 0.2631 0.2844 REMARK 3 5 3.3741 - 3.1323 1.00 2592 136 0.2974 0.2947 REMARK 3 6 3.1323 - 2.9476 1.00 2616 138 0.3065 0.3543 REMARK 3 7 2.9476 - 2.8000 0.99 2600 137 0.3145 0.3676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4294 REMARK 3 ANGLE : 0.658 5823 REMARK 3 CHIRALITY : 0.027 693 REMARK 3 PLANARITY : 0.002 743 REMARK 3 DIHEDRAL : 11.741 1485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5027 -21.1970 -11.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.4519 T22: 0.3544 REMARK 3 T33: 0.4713 T12: 0.0086 REMARK 3 T13: 0.0343 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 3.7696 L22: 6.5631 REMARK 3 L33: 5.4759 L12: -0.5839 REMARK 3 L13: -1.5727 L23: 1.1751 REMARK 3 S TENSOR REMARK 3 S11: -0.1200 S12: -0.0090 S13: -0.4427 REMARK 3 S21: 0.3566 S22: 0.0234 S23: 0.5451 REMARK 3 S31: 0.4809 S32: -0.2331 S33: 0.0434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8618 5.7499 -33.2847 REMARK 3 T TENSOR REMARK 3 T11: 0.9197 T22: 0.9019 REMARK 3 T33: 0.9874 T12: -0.1124 REMARK 3 T13: -0.1605 T23: 0.2052 REMARK 3 L TENSOR REMARK 3 L11: 0.9722 L22: 1.3920 REMARK 3 L33: 5.5255 L12: 0.1921 REMARK 3 L13: -0.6029 L23: -2.2975 REMARK 3 S TENSOR REMARK 3 S11: 0.4695 S12: -0.6938 S13: -0.7939 REMARK 3 S21: 0.1199 S22: 0.0663 S23: -0.2647 REMARK 3 S31: 0.4638 S32: -0.7855 S33: -0.1821 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4910 8.7445 -30.7237 REMARK 3 T TENSOR REMARK 3 T11: 1.3143 T22: 0.9766 REMARK 3 T33: 0.9085 T12: 0.1818 REMARK 3 T13: -0.0122 T23: 0.1524 REMARK 3 L TENSOR REMARK 3 L11: 1.4502 L22: 5.1422 REMARK 3 L33: 2.7174 L12: -2.2631 REMARK 3 L13: -0.3041 L23: 2.5291 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: -0.9389 S13: 0.0936 REMARK 3 S21: 0.9976 S22: -0.0848 S23: 1.0225 REMARK 3 S31: -1.2403 S32: -0.8514 S33: -0.3360 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5058 8.9962 -18.8851 REMARK 3 T TENSOR REMARK 3 T11: 0.6417 T22: 0.6595 REMARK 3 T33: 0.6491 T12: -0.1462 REMARK 3 T13: -0.0132 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 4.6824 L22: 4.9491 REMARK 3 L33: 3.8267 L12: 1.1299 REMARK 3 L13: -0.3425 L23: -1.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.1282 S13: 0.0016 REMARK 3 S21: 0.0380 S22: -0.2233 S23: -0.7303 REMARK 3 S31: -0.4185 S32: 1.0609 S33: 0.1191 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3557 4.4201 15.7894 REMARK 3 T TENSOR REMARK 3 T11: 1.5856 T22: 1.7881 REMARK 3 T33: 0.9395 T12: 0.7775 REMARK 3 T13: 0.0477 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 4.0040 L22: 8.3511 REMARK 3 L33: 0.5996 L12: -0.1890 REMARK 3 L13: 1.4036 L23: -1.0165 REMARK 3 S TENSOR REMARK 3 S11: 1.0489 S12: 0.5704 S13: 1.0419 REMARK 3 S21: -0.8727 S22: -0.4570 S23: -0.7110 REMARK 3 S31: -0.8870 S32: -1.8092 S33: 0.2344 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, PEG 1000, MES, PH 6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.29500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 VAL A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 LYS A 25 REMARK 465 GLY A 180 REMARK 465 ASP A 181 REMARK 465 ALA A 182 REMARK 465 ASN A 183 REMARK 465 ILE A 184 REMARK 465 LYS A 185 REMARK 465 ALA A 200 REMARK 465 ASP A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 PRO A 229 REMARK 465 GLU A 230 REMARK 465 PRO A 231 REMARK 465 LYS A 232 REMARK 465 SER A 233 REMARK 465 LYS A 313 REMARK 465 ASN A 314 REMARK 465 ILE A 315 REMARK 465 ASP A 345 REMARK 465 PRO A 346 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 THR A 349 REMARK 465 THR A 350 REMARK 465 VAL A 351 REMARK 465 LYS A 352 REMARK 465 PRO A 353 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ASP B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 ILE B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 ALA B 15 REMARK 465 ASP B 16 REMARK 465 GLN B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 PRO B 21 REMARK 465 VAL B 22 REMARK 465 GLY B 23 REMARK 465 ASP B 24 REMARK 465 LYS B 25 REMARK 465 VAL B 26 REMARK 465 GLU B 27 REMARK 465 GLY B 180 REMARK 465 ASP B 181 REMARK 465 ALA B 182 REMARK 465 ASN B 183 REMARK 465 ILE B 184 REMARK 465 ASP B 226 REMARK 465 GLY B 227 REMARK 465 LYS B 228 REMARK 465 PRO B 229 REMARK 465 GLU B 230 REMARK 465 PRO B 231 REMARK 465 LYS B 232 REMARK 465 GLU B 263 REMARK 465 ASN B 264 REMARK 465 LEU B 265 REMARK 465 GLU B 266 REMARK 465 ARG B 267 REMARK 465 GLN B 268 REMARK 465 ASN B 269 REMARK 465 SER B 270 REMARK 465 PHE B 271 REMARK 465 ARG B 272 REMARK 465 PRO B 273 REMARK 465 VAL B 274 REMARK 465 ASP B 302 REMARK 465 LEU B 303 REMARK 465 ASN B 304 REMARK 465 THR B 305 REMARK 465 LEU B 306 REMARK 465 SER B 307 REMARK 465 ALA B 308 REMARK 465 ILE B 309 REMARK 465 TRP B 310 REMARK 465 ALA B 311 REMARK 465 GLU B 312 REMARK 465 LYS B 313 REMARK 465 ASN B 314 REMARK 465 ILE B 315 REMARK 465 GLU B 316 REMARK 465 SER B 327 REMARK 465 ILE B 328 REMARK 465 GLY B 329 REMARK 465 ARG B 330 REMARK 465 LEU B 331 REMARK 465 ASP B 344 REMARK 465 SER B 345 REMARK 465 TYR B 346 REMARK 465 PHE B 347 REMARK 465 ASP B 348 REMARK 465 PRO B 349 REMARK 465 LYS B 350 REMARK 465 LYS B 351 REMARK 465 THR B 352 REMARK 465 THR B 353 REMARK 465 VAL B 354 REMARK 465 LYS B 355 REMARK 465 PRO B 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ASN A 186 CG OD1 ND2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 SER A 193 OG REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 SER A 197 OG REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 SER A 202 OG REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 SER A 234 OG REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 SER A 270 OG REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 THR A 281 OG1 CG2 REMARK 470 ILE A 294 CG1 CG2 CD1 REMARK 470 SER A 307 OG REMARK 470 TRP A 310 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 310 CZ3 CH2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 GLN A 323 CG CD OE1 NE2 REMARK 470 SER A 324 OG REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 SER A 342 OG REMARK 470 PHE A 344 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 THR B 60 OG1 CG2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 LEU B 122 CG CD1 CD2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 SER B 129 OG REMARK 470 SER B 130 OG REMARK 470 ASP B 131 CG OD1 OD2 REMARK 470 VAL B 134 CG1 CG2 REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 ARG B 141 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 SER B 167 OG REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ILE B 179 CG1 CG2 CD1 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 ASN B 186 CG OD1 ND2 REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 SER B 193 OG REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 SER B 197 OG REMARK 470 ASP B 201 CG OD1 OD2 REMARK 470 SER B 202 OG REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 SER B 223 OG REMARK 470 SER B 225 OG REMARK 470 SER B 233 OG REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ASN B 239 CG OD1 ND2 REMARK 470 ILE B 244 CG1 CG2 CD1 REMARK 470 LEU B 250 CG CD1 CD2 REMARK 470 LEU B 256 CG CD1 CD2 REMARK 470 GLN B 261 CG CD OE1 NE2 REMARK 470 ILE B 262 CG1 CG2 CD1 REMARK 470 PHE B 275 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 276 CG CD1 CD2 REMARK 470 TYR B 278 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 279 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 THR B 281 OG1 CG2 REMARK 470 LEU B 283 CG CD1 CD2 REMARK 470 HIS B 285 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 287 CG1 CG2 REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 290 CG1 CG2 REMARK 470 PHE B 292 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 294 CG1 CG2 CD1 REMARK 470 VAL B 295 CG1 CG2 REMARK 470 LEU B 296 CG CD1 CD2 REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 ASP B 319 CG OD1 OD2 REMARK 470 ILE B 320 CG1 CG2 CD1 REMARK 470 GLN B 323 CG CD OE1 NE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 SER B 333 OG REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 ASP B 335 CG OD1 OD2 REMARK 470 LYS B 336 CG CD CE NZ REMARK 470 LEU B 339 CG CD1 CD2 REMARK 470 LEU B 340 CG CD1 CD2 REMARK 470 GLU B 341 CG CD OE1 OE2 REMARK 470 LEU B 342 CG CD1 CD2 REMARK 470 LEU B 343 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 76.74 -100.53 REMARK 500 ASN A 72 -169.19 -101.71 REMARK 500 PHE A 143 -50.53 -155.81 REMARK 500 TYR A 187 72.37 -104.20 REMARK 500 THR A 281 -75.26 -75.18 REMARK 500 TYR A 343 -0.51 76.15 REMARK 500 PHE B 143 -48.33 -153.13 REMARK 500 SER B 178 52.53 -110.04 REMARK 500 TYR B 187 57.18 -118.49 REMARK 500 THR B 281 -74.95 -64.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L7Z RELATED DB: PDB REMARK 900 5L7Z CONTAINS THE EXO DOMAIN OF THE SAME PROTEIN DBREF 5L80 A 1 197 UNP P28750 EXU_DROME 1 197 DBREF 5L80 A 203 353 UNP P28750 EXU_DROME 256 406 DBREF 5L80 B 1 197 UNP P28750 EXU_DROME 1 197 DBREF 5L80 B 203 356 UNP P28750 EXU_DROME 256 406 SEQADV 5L80 LEU A 198 UNP P28750 LINKER SEQADV 5L80 ASP A 199 UNP P28750 LINKER SEQADV 5L80 ALA A 200 UNP P28750 LINKER SEQADV 5L80 ASP A 201 UNP P28750 LINKER SEQADV 5L80 SER A 202 UNP P28750 LINKER SEQADV 5L80 LEU B 198 UNP P28750 LINKER SEQADV 5L80 ASP B 199 UNP P28750 LINKER SEQADV 5L80 ALA B 200 UNP P28750 LINKER SEQADV 5L80 ASP B 201 UNP P28750 LINKER SEQADV 5L80 SER B 202 UNP P28750 LINKER SEQRES 1 A 353 MET VAL ALA ASP ASN ILE ASP ALA GLY VAL ALA ILE ALA SEQRES 2 A 353 VAL ALA ASP GLN SER SER SER PRO VAL GLY ASP LYS VAL SEQRES 3 A 353 GLU LEU PRO ALA GLY ASN TYR ILE LEU VAL GLY VAL ASP SEQRES 4 A 353 ILE ASP THR THR GLY ARG ARG LEU MET ASP GLU ILE VAL SEQRES 5 A 353 GLN LEU ALA ALA TYR THR PRO THR ASP HIS PHE GLU GLN SEQRES 6 A 353 TYR ILE MET PRO TYR MET ASN LEU ASN PRO ALA ALA ARG SEQRES 7 A 353 GLN ARG HIS GLN VAL ARG VAL ILE SER ILE GLY PHE TYR SEQRES 8 A 353 ARG MET LEU LYS SER MET GLN THR TYR LYS ILE ILE LYS SEQRES 9 A 353 SER LYS SER GLU ILE ALA ALA LEU LYS ASP PHE LEU ASN SEQRES 10 A 353 TRP LEU GLU GLN LEU LYS THR LYS ALA GLY PRO SER SER SEQRES 11 A 353 ASP GLY ILE VAL LEU ILE TYR HIS GLU GLU ARG LYS PHE SEQRES 12 A 353 ILE PRO TYR MET ILE LEU GLU SER LEU LYS LYS TYR GLY SEQRES 13 A 353 LEU LEU GLU ARG PHE THR ALA SER VAL LYS SER PHE ALA SEQRES 14 A 353 ASN SER ILE ASN LEU ALA LYS ALA SER ILE GLY ASP ALA SEQRES 15 A 353 ASN ILE LYS ASN TYR SER LEU ARG LYS LEU SER LYS ILE SEQRES 16 A 353 LEU SER LEU ASP ALA ASP SER LEU PHE ASP GLY ASN ALA SEQRES 17 A 353 SER VAL ARG ALA LYS LEU ALA PHE ASP VAL ALA LEU GLN SEQRES 18 A 353 LEU SER ASN SER ASP GLY LYS PRO GLU PRO LYS SER SER SEQRES 19 A 353 GLU ALA LEU GLU ASN MET PHE ASN ALA ILE ARG PRO PHE SEQRES 20 A 353 ALA LYS LEU VAL VAL SER ASP VAL LEU GLU LEU ASP ILE SEQRES 21 A 353 GLN ILE GLU ASN LEU GLU ARG GLN ASN SER PHE ARG PRO SEQRES 22 A 353 VAL PHE LEU ASN TYR PHE LYS THR THR LEU TYR HIS ARG SEQRES 23 A 353 VAL ARG ALA VAL LYS PHE ARG ILE VAL LEU ALA GLU ASN SEQRES 24 A 353 GLY PHE ASP LEU ASN THR LEU SER ALA ILE TRP ALA GLU SEQRES 25 A 353 LYS ASN ILE GLU GLY LEU ASP ILE ALA LEU GLN SER ILE SEQRES 26 A 353 GLY ARG LEU LYS SER LYS ASP LYS ALA GLU LEU LEU GLU SEQRES 27 A 353 LEU LEU ASP SER TYR PHE ASP PRO LYS LYS THR THR VAL SEQRES 28 A 353 LYS PRO SEQRES 1 B 353 MET VAL ALA ASP ASN ILE ASP ALA GLY VAL ALA ILE ALA SEQRES 2 B 353 VAL ALA ASP GLN SER SER SER PRO VAL GLY ASP LYS VAL SEQRES 3 B 353 GLU LEU PRO ALA GLY ASN TYR ILE LEU VAL GLY VAL ASP SEQRES 4 B 353 ILE ASP THR THR GLY ARG ARG LEU MET ASP GLU ILE VAL SEQRES 5 B 353 GLN LEU ALA ALA TYR THR PRO THR ASP HIS PHE GLU GLN SEQRES 6 B 353 TYR ILE MET PRO TYR MET ASN LEU ASN PRO ALA ALA ARG SEQRES 7 B 353 GLN ARG HIS GLN VAL ARG VAL ILE SER ILE GLY PHE TYR SEQRES 8 B 353 ARG MET LEU LYS SER MET GLN THR TYR LYS ILE ILE LYS SEQRES 9 B 353 SER LYS SER GLU ILE ALA ALA LEU LYS ASP PHE LEU ASN SEQRES 10 B 353 TRP LEU GLU GLN LEU LYS THR LYS ALA GLY PRO SER SER SEQRES 11 B 353 ASP GLY ILE VAL LEU ILE TYR HIS GLU GLU ARG LYS PHE SEQRES 12 B 353 ILE PRO TYR MET ILE LEU GLU SER LEU LYS LYS TYR GLY SEQRES 13 B 353 LEU LEU GLU ARG PHE THR ALA SER VAL LYS SER PHE ALA SEQRES 14 B 353 ASN SER ILE ASN LEU ALA LYS ALA SER ILE GLY ASP ALA SEQRES 15 B 353 ASN ILE LYS ASN TYR SER LEU ARG LYS LEU SER LYS ILE SEQRES 16 B 353 LEU SER LEU ASP ALA ASP SER LEU PHE ASP GLY ASN ALA SEQRES 17 B 353 SER VAL ARG ALA LYS LEU ALA PHE ASP VAL ALA LEU GLN SEQRES 18 B 353 LEU SER ASN SER ASP GLY LYS PRO GLU PRO LYS SER SER SEQRES 19 B 353 GLU ALA LEU GLU ASN MET PHE ASN ALA ILE ARG PRO PHE SEQRES 20 B 353 ALA LYS LEU VAL VAL SER ASP VAL LEU GLU LEU ASP ILE SEQRES 21 B 353 GLN ILE GLU ASN LEU GLU ARG GLN ASN SER PHE ARG PRO SEQRES 22 B 353 VAL PHE LEU ASN TYR PHE LYS THR THR LEU TYR HIS ARG SEQRES 23 B 353 VAL ARG ALA VAL LYS PHE ARG ILE VAL LEU ALA GLU ASN SEQRES 24 B 353 GLY PHE ASP LEU ASN THR LEU SER ALA ILE TRP ALA GLU SEQRES 25 B 353 LYS ASN ILE GLU GLY LEU ASP ILE ALA LEU GLN SER ILE SEQRES 26 B 353 GLY ARG LEU LYS SER LYS ASP LYS ALA GLU LEU LEU GLU SEQRES 27 B 353 LEU LEU ASP SER TYR PHE ASP PRO LYS LYS THR THR VAL SEQRES 28 B 353 LYS PRO FORMUL 3 HOH *11(H2 O) HELIX 1 AA1 ASN A 74 GLN A 82 1 9 HELIX 2 AA2 SER A 107 LYS A 125 1 19 HELIX 3 AA3 PHE A 143 TYR A 155 1 13 HELIX 4 AA4 LEU A 157 SER A 164 1 8 HELIX 5 AA5 SER A 171 ILE A 179 1 9 HELIX 6 AA6 SER A 188 LEU A 196 1 9 HELIX 7 AA7 ASN A 207 SER A 225 1 19 HELIX 8 AA8 GLU A 235 ARG A 245 1 11 HELIX 9 AA9 VAL A 251 ASN A 269 1 19 HELIX 10 AB1 PHE A 275 THR A 282 1 8 HELIX 11 AB2 THR A 282 ASN A 299 1 18 HELIX 12 AB3 ASP A 302 GLU A 312 1 11 HELIX 13 AB4 GLY A 317 SER A 324 1 8 HELIX 14 AB5 LYS A 329 SER A 342 1 14 HELIX 15 AB6 ASN B 74 GLN B 82 1 9 HELIX 16 AB7 SER B 107 GLY B 127 1 21 HELIX 17 AB8 PHE B 143 LYS B 153 1 11 HELIX 18 AB9 LEU B 157 SER B 164 1 8 HELIX 19 AC1 SER B 171 SER B 178 1 8 HELIX 20 AC2 SER B 188 LEU B 196 1 9 HELIX 21 AC3 ASN B 207 SER B 225 1 19 HELIX 22 AC4 SER B 234 ARG B 245 1 12 HELIX 23 AC5 VAL B 251 ILE B 262 1 12 HELIX 24 AC6 ASN B 277 THR B 282 1 6 HELIX 25 AC7 THR B 282 ASN B 299 1 18 HELIX 26 AC8 LEU B 318 GLN B 323 1 6 HELIX 27 AC9 SER B 333 LEU B 342 1 10 SHEET 1 AA1 6 HIS A 62 TYR A 66 0 SHEET 2 AA1 6 ILE A 51 TYR A 57 -1 N ALA A 56 O PHE A 63 SHEET 3 AA1 6 TYR A 33 THR A 42 -1 N ASP A 41 O VAL A 52 SHEET 4 AA1 6 GLY A 132 TYR A 137 1 O VAL A 134 N ILE A 34 SHEET 5 AA1 6 VAL A 165 ASN A 170 1 O SER A 167 N LEU A 135 SHEET 6 AA1 6 ALA A 248 LEU A 250 -1 O LYS A 249 N PHE A 168 SHEET 1 AA2 3 VAL A 83 ILE A 88 0 SHEET 2 AA2 3 TYR A 91 SER A 96 -1 O LYS A 95 N ARG A 84 SHEET 3 AA2 3 ILE A 102 ILE A 103 -1 O ILE A 103 N LEU A 94 SHEET 1 AA3 6 HIS B 62 TYR B 66 0 SHEET 2 AA3 6 ILE B 51 TYR B 57 -1 N ALA B 56 O PHE B 63 SHEET 3 AA3 6 ILE B 34 THR B 42 -1 N ASP B 41 O VAL B 52 SHEET 4 AA3 6 ILE B 133 TYR B 137 1 O VAL B 134 N ILE B 34 SHEET 5 AA3 6 VAL B 165 ASN B 170 1 O ALA B 169 N LEU B 135 SHEET 6 AA3 6 ALA B 248 LEU B 250 -1 O LYS B 249 N PHE B 168 SHEET 1 AA4 3 VAL B 83 ILE B 88 0 SHEET 2 AA4 3 TYR B 91 SER B 96 -1 O TYR B 91 N ILE B 88 SHEET 3 AA4 3 ILE B 102 ILE B 103 -1 O ILE B 103 N LEU B 94 CRYST1 79.540 66.590 81.330 90.00 113.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012572 0.000000 0.005503 0.00000 SCALE2 0.000000 0.015017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013422 0.00000