HEADER SIGNALING PROTEIN 07-JUN-16 5L85 TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN HUMAN ZNHIT3 AND NUFIP1 TITLE 2 PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER HIT DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNF-4A COACTIVATOR,THYROID HORMONE RECEPTOR INTERACTOR 3, COMPND 5 THYROID RECEPTOR-INTERACTING PROTEIN 3,TRIP-3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR FRAGILE X MENTAL RETARDATION-INTERACTING PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NUCLEAR FMRP-INTERACTING PROTEIN 1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNHIT3, TRIP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NUFIP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PAC-HIT FOLD JAW HELICES, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.QUINTERNET,M.-E.CHAGOT,X.MANIVAL REVDAT 7 14-JUN-23 5L85 1 REMARK REVDAT 6 08-MAY-19 5L85 1 REMARK REVDAT 5 06-SEP-17 5L85 1 REMARK REVDAT 4 19-OCT-16 5L85 1 JRNL REVDAT 3 28-SEP-16 5L85 1 JRNL REVDAT 2 21-SEP-16 5L85 1 JRNL REVDAT 1 31-AUG-16 5L85 0 JRNL AUTH M.QUINTERNET,M.E.CHAGOT,B.ROTHE,D.TIOTIU,B.CHARPENTIER, JRNL AUTH 2 X.MANIVAL JRNL TITL STRUCTURAL FEATURES OF THE BOX C/D SNORNP PRE-ASSEMBLY JRNL TITL 2 PROCESS ARE CONSERVED THROUGH SPECIES. JRNL REF STRUCTURE V. 24 1693 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27594683 JRNL DOI 10.1016/J.STR.2016.07.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000305. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] ZNHIT3, 1 MM REMARK 210 [U-13C; U-15N] NUFIP1, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D 1H-1H REMARK 210 NOESY; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, TOPSPIN 3.2, CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 160 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 148 HE2 HIS B 465 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 122 72.81 -162.72 REMARK 500 1 GLU A 153 -94.37 51.12 REMARK 500 1 ASP B 481 -60.50 -91.96 REMARK 500 1 PHE B 482 -77.85 -90.33 REMARK 500 2 PRO A 82 99.53 -66.90 REMARK 500 2 HIS A 83 -75.25 -168.09 REMARK 500 2 PHE B 482 -86.08 -115.41 REMARK 500 3 PRO A 82 45.79 -76.49 REMARK 500 3 ASP A 122 40.07 -145.38 REMARK 500 3 GLU A 153 -171.23 58.62 REMARK 500 3 PHE B 482 -88.38 -110.11 REMARK 500 3 ASP B 486 -27.03 -143.41 REMARK 500 3 LYS B 491 37.56 -85.53 REMARK 500 4 SER A 150 101.51 69.19 REMARK 500 4 PHE B 482 -83.38 -100.43 REMARK 500 4 ASP B 486 51.48 -143.38 REMARK 500 4 LYS B 491 49.33 -82.34 REMARK 500 5 MET A 84 35.38 -84.04 REMARK 500 5 ASP A 122 77.22 -151.57 REMARK 500 5 GLN A 151 62.57 64.35 REMARK 500 5 ASN A 152 125.23 71.44 REMARK 500 5 GLU A 154 43.45 -80.35 REMARK 500 5 PHE B 482 -91.81 -116.27 REMARK 500 6 MET A 84 67.25 -155.44 REMARK 500 6 ASP A 122 51.43 -150.04 REMARK 500 6 GLU A 154 -161.87 -122.27 REMARK 500 6 PHE B 482 -87.02 -119.09 REMARK 500 6 THR B 487 -41.91 -144.96 REMARK 500 7 PHE B 482 -85.29 -87.32 REMARK 500 7 ASP B 486 -52.01 -148.70 REMARK 500 8 SER A 150 -169.48 55.19 REMARK 500 8 PHE B 482 -87.22 -107.27 REMARK 500 8 ASN B 488 -59.56 -127.53 REMARK 500 8 ALA B 490 43.09 -100.12 REMARK 500 8 ASP B 494 -60.33 67.69 REMARK 500 9 HIS A 83 69.76 -108.86 REMARK 500 9 ASP A 122 46.40 -141.63 REMARK 500 9 PHE B 482 -85.95 -85.97 REMARK 500 9 LYS B 493 45.73 -98.02 REMARK 500 10 ASP A 122 69.23 -160.52 REMARK 500 10 PHE B 482 -89.68 -89.64 REMARK 500 10 ASP B 486 -12.81 -153.49 REMARK 500 11 ASN A 152 109.64 67.68 REMARK 500 11 PHE B 482 -90.43 -107.63 REMARK 500 11 ASP B 486 23.34 -140.26 REMARK 500 12 PRO A 82 76.85 -67.61 REMARK 500 12 HIS A 83 46.29 -141.81 REMARK 500 12 GLU A 154 43.10 -82.10 REMARK 500 12 PHE B 482 -92.86 -97.41 REMARK 500 12 ASN B 488 -64.24 -122.64 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34007 RELATED DB: BMRB DBREF 5L85 A 85 155 UNP Q15649 ZNHI3_HUMAN 85 155 DBREF 5L85 B 462 495 UNP Q9UHK0 NUFP1_HUMAN 462 495 SEQADV 5L85 GLY A 81 UNP Q15649 EXPRESSION TAG SEQADV 5L85 PRO A 82 UNP Q15649 EXPRESSION TAG SEQADV 5L85 HIS A 83 UNP Q15649 EXPRESSION TAG SEQADV 5L85 MET A 84 UNP Q15649 EXPRESSION TAG SEQRES 1 A 75 GLY PRO HIS MET ASP ARG VAL SER LEU GLN ASN LEU LYS SEQRES 2 A 75 ASN LEU GLY GLU SER ALA THR LEU ARG SER LEU LEU LEU SEQRES 3 A 75 ASN PRO HIS LEU ARG GLN LEU MET VAL ASN LEU ASP GLN SEQRES 4 A 75 GLY GLU ASP LYS ALA LYS LEU MET ARG ALA TYR MET GLN SEQRES 5 A 75 GLU PRO LEU PHE VAL GLU PHE ALA ASP CYS CYS LEU GLY SEQRES 6 A 75 ILE VAL GLU PRO SER GLN ASN GLU GLU SER SEQRES 1 B 34 ASP ILE ARG HIS GLU ARG ASN VAL ILE LEU GLN CYS VAL SEQRES 2 B 34 ARG TYR ILE ILE LYS LYS ASP PHE PHE GLY LEU ASP THR SEQRES 3 B 34 ASN SER ALA LYS SER LYS ASP VAL HELIX 1 AA1 SER A 88 SER A 98 1 11 HELIX 2 AA2 SER A 98 SER A 103 1 6 HELIX 3 AA3 ASN A 107 GLY A 120 1 14 HELIX 4 AA4 ASP A 122 TYR A 130 1 9 HELIX 5 AA5 GLU A 133 GLU A 148 1 16 HELIX 6 AA6 ILE B 463 ASP B 481 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1