data_5L93 # _entry.id 5L93 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5L93 pdb_00005l93 10.2210/pdb5l93/pdb WWPDB D_1200000325 ? ? EMDB EMD-4015 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-07-13 2 'Structure model' 1 1 2016-08-10 3 'Structure model' 1 2 2017-02-22 4 'Structure model' 1 3 2017-08-02 5 'Structure model' 1 4 2018-10-17 6 'Structure model' 1 5 2019-12-11 7 'Structure model' 1 6 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' Other 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' Other 8 7 'Structure model' 'Data collection' 9 7 'Structure model' 'Database references' 10 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_imaging_optics 2 4 'Structure model' em_software 3 5 'Structure model' cell 4 5 'Structure model' refine 5 6 'Structure model' atom_sites 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' database_2 9 7 'Structure model' em_3d_fitting_list 10 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_imaging_optics.energyfilter_name' 2 4 'Structure model' '_em_software.name' 3 4 'Structure model' '_em_software.version' 4 5 'Structure model' '_cell.Z_PDB' 5 5 'Structure model' '_refine.pdbx_refine_id' 6 6 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 7 6 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 8 6 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 9 7 'Structure model' '_database_2.pdbx_DOI' 10 7 'Structure model' '_database_2.pdbx_database_accession' 11 7 'Structure model' '_em_3d_fitting_list.accession_code' 12 7 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 13 7 'Structure model' '_em_3d_fitting_list.source_name' 14 7 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L93 _pdbx_database_status.recvd_initial_deposition_date 2016-06-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4015 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schur, F.K.M.' 1 'Obr, M.' 2 'Hagen, W.J.H.' 3 'Wan, W.' 4 'Arjen, J.J.' 5 'Kirkpatrick, J.M.' 6 'Sachse, C.' 7 'Kraeusslich, H.-G.' 8 'Briggs, J.A.G.' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 353 _citation.language ? _citation.page_first 506 _citation.page_last 508 _citation.title 'An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aaf9620 _citation.pdbx_database_id_PubMed 27417497 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schur, F.K.' 1 ? primary 'Obr, M.' 2 ? primary 'Hagen, W.J.' 3 ? primary 'Wan, W.' 4 ? primary 'Jakobi, A.J.' 5 ? primary 'Kirkpatrick, J.M.' 6 ? primary 'Sachse, C.' 7 ? primary 'Krausslich, H.G.' 8 ? primary 'Briggs, J.A.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Capsid protein p24' _entity.formula_weight 24789.396 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Pr55Gag # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQ MREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAE QASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVT ; _entity_poly.pdbx_seq_one_letter_code_can ;SPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQ MREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAE QASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVT ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 ARG n 1 4 THR n 1 5 LEU n 1 6 ASN n 1 7 ALA n 1 8 TRP n 1 9 VAL n 1 10 LYS n 1 11 VAL n 1 12 VAL n 1 13 GLU n 1 14 GLU n 1 15 LYS n 1 16 ALA n 1 17 PHE n 1 18 SER n 1 19 PRO n 1 20 GLU n 1 21 VAL n 1 22 ILE n 1 23 PRO n 1 24 MET n 1 25 PHE n 1 26 SER n 1 27 ALA n 1 28 LEU n 1 29 SER n 1 30 GLU n 1 31 GLY n 1 32 ALA n 1 33 THR n 1 34 PRO n 1 35 GLN n 1 36 ASP n 1 37 LEU n 1 38 ASN n 1 39 THR n 1 40 MET n 1 41 LEU n 1 42 ASN n 1 43 THR n 1 44 VAL n 1 45 GLY n 1 46 GLY n 1 47 HIS n 1 48 GLN n 1 49 ALA n 1 50 ALA n 1 51 MET n 1 52 GLN n 1 53 MET n 1 54 LEU n 1 55 LYS n 1 56 GLU n 1 57 THR n 1 58 ILE n 1 59 ASN n 1 60 GLU n 1 61 GLU n 1 62 ALA n 1 63 ALA n 1 64 GLU n 1 65 TRP n 1 66 ASP n 1 67 ARG n 1 68 LEU n 1 69 HIS n 1 70 PRO n 1 71 VAL n 1 72 HIS n 1 73 ALA n 1 74 GLY n 1 75 PRO n 1 76 ILE n 1 77 ALA n 1 78 PRO n 1 79 GLY n 1 80 GLN n 1 81 MET n 1 82 ARG n 1 83 GLU n 1 84 PRO n 1 85 ARG n 1 86 GLY n 1 87 SER n 1 88 ASP n 1 89 ILE n 1 90 ALA n 1 91 GLY n 1 92 THR n 1 93 THR n 1 94 SER n 1 95 THR n 1 96 LEU n 1 97 GLN n 1 98 GLU n 1 99 GLN n 1 100 ILE n 1 101 GLY n 1 102 TRP n 1 103 MET n 1 104 THR n 1 105 HIS n 1 106 ASN n 1 107 PRO n 1 108 PRO n 1 109 ILE n 1 110 PRO n 1 111 VAL n 1 112 GLY n 1 113 GLU n 1 114 ILE n 1 115 TYR n 1 116 LYS n 1 117 ARG n 1 118 TRP n 1 119 ILE n 1 120 ILE n 1 121 LEU n 1 122 GLY n 1 123 LEU n 1 124 ASN n 1 125 LYS n 1 126 ILE n 1 127 VAL n 1 128 ARG n 1 129 MET n 1 130 TYR n 1 131 SER n 1 132 PRO n 1 133 THR n 1 134 SER n 1 135 ILE n 1 136 LEU n 1 137 ASP n 1 138 ILE n 1 139 ARG n 1 140 GLN n 1 141 GLY n 1 142 PRO n 1 143 LYS n 1 144 GLU n 1 145 PRO n 1 146 PHE n 1 147 ARG n 1 148 ASP n 1 149 TYR n 1 150 VAL n 1 151 ASP n 1 152 ARG n 1 153 PHE n 1 154 TYR n 1 155 LYS n 1 156 THR n 1 157 LEU n 1 158 ARG n 1 159 ALA n 1 160 GLU n 1 161 GLN n 1 162 ALA n 1 163 SER n 1 164 GLN n 1 165 GLU n 1 166 VAL n 1 167 LYS n 1 168 ASN n 1 169 TRP n 1 170 MET n 1 171 THR n 1 172 GLU n 1 173 THR n 1 174 LEU n 1 175 LEU n 1 176 VAL n 1 177 GLN n 1 178 ASN n 1 179 ALA n 1 180 ASN n 1 181 PRO n 1 182 ASP n 1 183 CYS n 1 184 LYS n 1 185 THR n 1 186 ILE n 1 187 LEU n 1 188 LYS n 1 189 ALA n 1 190 LEU n 1 191 GLY n 1 192 PRO n 1 193 GLY n 1 194 ALA n 1 195 THR n 1 196 LEU n 1 197 GLU n 1 198 GLU n 1 199 MET n 1 200 MET n 1 201 THR n 1 202 ALA n 1 203 CYS n 1 204 GLN n 1 205 GLY n 1 206 VAL n 1 207 GLY n 1 208 GLY n 1 209 PRO n 1 210 GLY n 1 211 HIS n 1 212 LYS n 1 213 ALA n 1 214 ARG n 1 215 VAL n 1 216 LEU n 1 217 ALA n 1 218 GLU n 1 219 ALA n 1 220 MET n 1 221 SER n 1 222 GLN n 1 223 VAL n 1 224 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 224 _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'isolate NY5' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1 group M subtype B (isolate NY5)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11698 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 148 148 SER SER A . n A 1 2 PRO 2 149 149 PRO PRO A . n A 1 3 ARG 3 150 150 ARG ARG A . n A 1 4 THR 4 151 151 THR THR A . n A 1 5 LEU 5 152 152 LEU LEU A . n A 1 6 ASN 6 153 153 ASN ASN A . n A 1 7 ALA 7 154 154 ALA ALA A . n A 1 8 TRP 8 155 155 TRP TRP A . n A 1 9 VAL 9 156 156 VAL VAL A . n A 1 10 LYS 10 157 157 LYS LYS A . n A 1 11 VAL 11 158 158 VAL VAL A . n A 1 12 VAL 12 159 159 VAL VAL A . n A 1 13 GLU 13 160 160 GLU GLU A . n A 1 14 GLU 14 161 161 GLU GLU A . n A 1 15 LYS 15 162 162 LYS LYS A . n A 1 16 ALA 16 163 163 ALA ALA A . n A 1 17 PHE 17 164 164 PHE PHE A . n A 1 18 SER 18 165 165 SER SER A . n A 1 19 PRO 19 166 166 PRO PRO A . n A 1 20 GLU 20 167 167 GLU GLU A . n A 1 21 VAL 21 168 168 VAL VAL A . n A 1 22 ILE 22 169 169 ILE ILE A . n A 1 23 PRO 23 170 170 PRO PRO A . n A 1 24 MET 24 171 171 MET MET A . n A 1 25 PHE 25 172 172 PHE PHE A . n A 1 26 SER 26 173 173 SER SER A . n A 1 27 ALA 27 174 174 ALA ALA A . n A 1 28 LEU 28 175 175 LEU LEU A . n A 1 29 SER 29 176 176 SER SER A . n A 1 30 GLU 30 177 177 GLU GLU A . n A 1 31 GLY 31 178 178 GLY GLY A . n A 1 32 ALA 32 179 179 ALA ALA A . n A 1 33 THR 33 180 180 THR THR A . n A 1 34 PRO 34 181 181 PRO PRO A . n A 1 35 GLN 35 182 182 GLN GLN A . n A 1 36 ASP 36 183 183 ASP ASP A . n A 1 37 LEU 37 184 184 LEU LEU A . n A 1 38 ASN 38 185 185 ASN ASN A . n A 1 39 THR 39 186 186 THR THR A . n A 1 40 MET 40 187 187 MET MET A . n A 1 41 LEU 41 188 188 LEU LEU A . n A 1 42 ASN 42 189 189 ASN ASN A . n A 1 43 THR 43 190 190 THR THR A . n A 1 44 VAL 44 191 191 VAL VAL A . n A 1 45 GLY 45 192 192 GLY GLY A . n A 1 46 GLY 46 193 193 GLY GLY A . n A 1 47 HIS 47 194 194 HIS HIS A . n A 1 48 GLN 48 195 195 GLN GLN A . n A 1 49 ALA 49 196 196 ALA ALA A . n A 1 50 ALA 50 197 197 ALA ALA A . n A 1 51 MET 51 198 198 MET MET A . n A 1 52 GLN 52 199 199 GLN GLN A . n A 1 53 MET 53 200 200 MET MET A . n A 1 54 LEU 54 201 201 LEU LEU A . n A 1 55 LYS 55 202 202 LYS LYS A . n A 1 56 GLU 56 203 203 GLU GLU A . n A 1 57 THR 57 204 204 THR THR A . n A 1 58 ILE 58 205 205 ILE ILE A . n A 1 59 ASN 59 206 206 ASN ASN A . n A 1 60 GLU 60 207 207 GLU GLU A . n A 1 61 GLU 61 208 208 GLU GLU A . n A 1 62 ALA 62 209 209 ALA ALA A . n A 1 63 ALA 63 210 210 ALA ALA A . n A 1 64 GLU 64 211 211 GLU GLU A . n A 1 65 TRP 65 212 212 TRP TRP A . n A 1 66 ASP 66 213 213 ASP ASP A . n A 1 67 ARG 67 214 214 ARG ARG A . n A 1 68 LEU 68 215 215 LEU LEU A . n A 1 69 HIS 69 216 216 HIS HIS A . n A 1 70 PRO 70 217 217 PRO PRO A . n A 1 71 VAL 71 218 218 VAL VAL A . n A 1 72 HIS 72 219 219 HIS HIS A . n A 1 73 ALA 73 220 220 ALA ALA A . n A 1 74 GLY 74 221 221 GLY GLY A . n A 1 75 PRO 75 222 222 PRO PRO A . n A 1 76 ILE 76 223 223 ILE ILE A . n A 1 77 ALA 77 224 224 ALA ALA A . n A 1 78 PRO 78 225 225 PRO PRO A . n A 1 79 GLY 79 226 226 GLY GLY A . n A 1 80 GLN 80 227 227 GLN GLN A . n A 1 81 MET 81 228 228 MET MET A . n A 1 82 ARG 82 229 229 ARG ARG A . n A 1 83 GLU 83 230 230 GLU GLU A . n A 1 84 PRO 84 231 231 PRO PRO A . n A 1 85 ARG 85 232 232 ARG ARG A . n A 1 86 GLY 86 233 233 GLY GLY A . n A 1 87 SER 87 234 234 SER SER A . n A 1 88 ASP 88 235 235 ASP ASP A . n A 1 89 ILE 89 236 236 ILE ILE A . n A 1 90 ALA 90 237 237 ALA ALA A . n A 1 91 GLY 91 238 238 GLY GLY A . n A 1 92 THR 92 239 239 THR THR A . n A 1 93 THR 93 240 240 THR THR A . n A 1 94 SER 94 241 241 SER SER A . n A 1 95 THR 95 242 242 THR THR A . n A 1 96 LEU 96 243 243 LEU LEU A . n A 1 97 GLN 97 244 244 GLN GLN A . n A 1 98 GLU 98 245 245 GLU GLU A . n A 1 99 GLN 99 246 246 GLN GLN A . n A 1 100 ILE 100 247 247 ILE ILE A . n A 1 101 GLY 101 248 248 GLY GLY A . n A 1 102 TRP 102 249 249 TRP TRP A . n A 1 103 MET 103 250 250 MET MET A . n A 1 104 THR 104 251 251 THR THR A . n A 1 105 HIS 105 252 252 HIS HIS A . n A 1 106 ASN 106 253 253 ASN ASN A . n A 1 107 PRO 107 254 254 PRO PRO A . n A 1 108 PRO 108 255 255 PRO PRO A . n A 1 109 ILE 109 256 256 ILE ILE A . n A 1 110 PRO 110 257 257 PRO PRO A . n A 1 111 VAL 111 258 258 VAL VAL A . n A 1 112 GLY 112 259 259 GLY GLY A . n A 1 113 GLU 113 260 260 GLU GLU A . n A 1 114 ILE 114 261 261 ILE ILE A . n A 1 115 TYR 115 262 262 TYR TYR A . n A 1 116 LYS 116 263 263 LYS LYS A . n A 1 117 ARG 117 264 264 ARG ARG A . n A 1 118 TRP 118 265 265 TRP TRP A . n A 1 119 ILE 119 266 266 ILE ILE A . n A 1 120 ILE 120 267 267 ILE ILE A . n A 1 121 LEU 121 268 268 LEU LEU A . n A 1 122 GLY 122 269 269 GLY GLY A . n A 1 123 LEU 123 270 270 LEU LEU A . n A 1 124 ASN 124 271 271 ASN ASN A . n A 1 125 LYS 125 272 272 LYS LYS A . n A 1 126 ILE 126 273 273 ILE ILE A . n A 1 127 VAL 127 274 274 VAL VAL A . n A 1 128 ARG 128 275 275 ARG ARG A . n A 1 129 MET 129 276 276 MET MET A . n A 1 130 TYR 130 277 277 TYR TYR A . n A 1 131 SER 131 278 278 SER SER A . n A 1 132 PRO 132 279 279 PRO PRO A . n A 1 133 THR 133 280 280 THR THR A . n A 1 134 SER 134 281 281 SER SER A . n A 1 135 ILE 135 282 282 ILE ILE A . n A 1 136 LEU 136 283 283 LEU LEU A . n A 1 137 ASP 137 284 284 ASP ASP A . n A 1 138 ILE 138 285 285 ILE ILE A . n A 1 139 ARG 139 286 286 ARG ARG A . n A 1 140 GLN 140 287 287 GLN GLN A . n A 1 141 GLY 141 288 288 GLY GLY A . n A 1 142 PRO 142 289 289 PRO PRO A . n A 1 143 LYS 143 290 290 LYS LYS A . n A 1 144 GLU 144 291 291 GLU GLU A . n A 1 145 PRO 145 292 292 PRO PRO A . n A 1 146 PHE 146 293 293 PHE PHE A . n A 1 147 ARG 147 294 294 ARG ARG A . n A 1 148 ASP 148 295 295 ASP ASP A . n A 1 149 TYR 149 296 296 TYR TYR A . n A 1 150 VAL 150 297 297 VAL VAL A . n A 1 151 ASP 151 298 298 ASP ASP A . n A 1 152 ARG 152 299 299 ARG ARG A . n A 1 153 PHE 153 300 300 PHE PHE A . n A 1 154 TYR 154 301 301 TYR TYR A . n A 1 155 LYS 155 302 302 LYS LYS A . n A 1 156 THR 156 303 303 THR THR A . n A 1 157 LEU 157 304 304 LEU LEU A . n A 1 158 ARG 158 305 305 ARG ARG A . n A 1 159 ALA 159 306 306 ALA ALA A . n A 1 160 GLU 160 307 307 GLU GLU A . n A 1 161 GLN 161 308 308 GLN GLN A . n A 1 162 ALA 162 309 309 ALA ALA A . n A 1 163 SER 163 310 310 SER SER A . n A 1 164 GLN 164 311 311 GLN GLN A . n A 1 165 GLU 165 312 312 GLU GLU A . n A 1 166 VAL 166 313 313 VAL VAL A . n A 1 167 LYS 167 314 314 LYS LYS A . n A 1 168 ASN 168 315 315 ASN ASN A . n A 1 169 TRP 169 316 316 TRP TRP A . n A 1 170 MET 170 317 317 MET MET A . n A 1 171 THR 171 318 318 THR THR A . n A 1 172 GLU 172 319 319 GLU GLU A . n A 1 173 THR 173 320 320 THR THR A . n A 1 174 LEU 174 321 321 LEU LEU A . n A 1 175 LEU 175 322 322 LEU LEU A . n A 1 176 VAL 176 323 323 VAL VAL A . n A 1 177 GLN 177 324 324 GLN GLN A . n A 1 178 ASN 178 325 325 ASN ASN A . n A 1 179 ALA 179 326 326 ALA ALA A . n A 1 180 ASN 180 327 327 ASN ASN A . n A 1 181 PRO 181 328 328 PRO PRO A . n A 1 182 ASP 182 329 329 ASP ASP A . n A 1 183 CYS 183 330 330 CYS CYS A . n A 1 184 LYS 184 331 331 LYS LYS A . n A 1 185 THR 185 332 332 THR THR A . n A 1 186 ILE 186 333 333 ILE ILE A . n A 1 187 LEU 187 334 334 LEU LEU A . n A 1 188 LYS 188 335 335 LYS LYS A . n A 1 189 ALA 189 336 336 ALA ALA A . n A 1 190 LEU 190 337 337 LEU LEU A . n A 1 191 GLY 191 338 338 GLY GLY A . n A 1 192 PRO 192 339 339 PRO PRO A . n A 1 193 GLY 193 340 340 GLY GLY A . n A 1 194 ALA 194 341 341 ALA ALA A . n A 1 195 THR 195 342 342 THR THR A . n A 1 196 LEU 196 343 343 LEU LEU A . n A 1 197 GLU 197 344 344 GLU GLU A . n A 1 198 GLU 198 345 345 GLU GLU A . n A 1 199 MET 199 346 346 MET MET A . n A 1 200 MET 200 347 347 MET MET A . n A 1 201 THR 201 348 348 THR THR A . n A 1 202 ALA 202 349 349 ALA ALA A . n A 1 203 CYS 203 350 350 CYS CYS A . n A 1 204 GLN 204 351 351 GLN GLN A . n A 1 205 GLY 205 352 352 GLY GLY A . n A 1 206 VAL 206 353 353 VAL VAL A . n A 1 207 GLY 207 354 354 GLY GLY A . n A 1 208 GLY 208 355 355 GLY GLY A . n A 1 209 PRO 209 356 356 PRO PRO A . n A 1 210 GLY 210 357 357 GLY GLY A . n A 1 211 HIS 211 358 358 HIS HIS A . n A 1 212 LYS 212 359 359 LYS LYS A . n A 1 213 ALA 213 360 360 ALA ALA A . n A 1 214 ARG 214 361 361 ARG ARG A . n A 1 215 VAL 215 362 362 VAL VAL A . n A 1 216 LEU 216 363 363 LEU LEU A . n A 1 217 ALA 217 364 364 ALA ALA A . n A 1 218 GLU 218 365 365 GLU GLU A . n A 1 219 ALA 219 366 366 ALA ALA A . n A 1 220 MET 220 367 367 MET MET A . n A 1 221 SER 221 368 368 SER SER A . n A 1 222 GLN 222 369 369 GLN GLN A . n A 1 223 VAL 223 370 370 VAL VAL A . n A 1 224 THR 224 371 371 THR THR A . n B 1 1 SER 1 148 148 SER SER B . n B 1 2 PRO 2 149 149 PRO PRO B . n B 1 3 ARG 3 150 150 ARG ARG B . n B 1 4 THR 4 151 151 THR THR B . n B 1 5 LEU 5 152 152 LEU LEU B . n B 1 6 ASN 6 153 153 ASN ASN B . n B 1 7 ALA 7 154 154 ALA ALA B . n B 1 8 TRP 8 155 155 TRP TRP B . n B 1 9 VAL 9 156 156 VAL VAL B . n B 1 10 LYS 10 157 157 LYS LYS B . n B 1 11 VAL 11 158 158 VAL VAL B . n B 1 12 VAL 12 159 159 VAL VAL B . n B 1 13 GLU 13 160 160 GLU GLU B . n B 1 14 GLU 14 161 161 GLU GLU B . n B 1 15 LYS 15 162 162 LYS LYS B . n B 1 16 ALA 16 163 163 ALA ALA B . n B 1 17 PHE 17 164 164 PHE PHE B . n B 1 18 SER 18 165 165 SER SER B . n B 1 19 PRO 19 166 166 PRO PRO B . n B 1 20 GLU 20 167 167 GLU GLU B . n B 1 21 VAL 21 168 168 VAL VAL B . n B 1 22 ILE 22 169 169 ILE ILE B . n B 1 23 PRO 23 170 170 PRO PRO B . n B 1 24 MET 24 171 171 MET MET B . n B 1 25 PHE 25 172 172 PHE PHE B . n B 1 26 SER 26 173 173 SER SER B . n B 1 27 ALA 27 174 174 ALA ALA B . n B 1 28 LEU 28 175 175 LEU LEU B . n B 1 29 SER 29 176 176 SER SER B . n B 1 30 GLU 30 177 177 GLU GLU B . n B 1 31 GLY 31 178 178 GLY GLY B . n B 1 32 ALA 32 179 179 ALA ALA B . n B 1 33 THR 33 180 180 THR THR B . n B 1 34 PRO 34 181 181 PRO PRO B . n B 1 35 GLN 35 182 182 GLN GLN B . n B 1 36 ASP 36 183 183 ASP ASP B . n B 1 37 LEU 37 184 184 LEU LEU B . n B 1 38 ASN 38 185 185 ASN ASN B . n B 1 39 THR 39 186 186 THR THR B . n B 1 40 MET 40 187 187 MET MET B . n B 1 41 LEU 41 188 188 LEU LEU B . n B 1 42 ASN 42 189 189 ASN ASN B . n B 1 43 THR 43 190 190 THR THR B . n B 1 44 VAL 44 191 191 VAL VAL B . n B 1 45 GLY 45 192 192 GLY GLY B . n B 1 46 GLY 46 193 193 GLY GLY B . n B 1 47 HIS 47 194 194 HIS HIS B . n B 1 48 GLN 48 195 195 GLN GLN B . n B 1 49 ALA 49 196 196 ALA ALA B . n B 1 50 ALA 50 197 197 ALA ALA B . n B 1 51 MET 51 198 198 MET MET B . n B 1 52 GLN 52 199 199 GLN GLN B . n B 1 53 MET 53 200 200 MET MET B . n B 1 54 LEU 54 201 201 LEU LEU B . n B 1 55 LYS 55 202 202 LYS LYS B . n B 1 56 GLU 56 203 203 GLU GLU B . n B 1 57 THR 57 204 204 THR THR B . n B 1 58 ILE 58 205 205 ILE ILE B . n B 1 59 ASN 59 206 206 ASN ASN B . n B 1 60 GLU 60 207 207 GLU GLU B . n B 1 61 GLU 61 208 208 GLU GLU B . n B 1 62 ALA 62 209 209 ALA ALA B . n B 1 63 ALA 63 210 210 ALA ALA B . n B 1 64 GLU 64 211 211 GLU GLU B . n B 1 65 TRP 65 212 212 TRP TRP B . n B 1 66 ASP 66 213 213 ASP ASP B . n B 1 67 ARG 67 214 214 ARG ARG B . n B 1 68 LEU 68 215 215 LEU LEU B . n B 1 69 HIS 69 216 216 HIS HIS B . n B 1 70 PRO 70 217 217 PRO PRO B . n B 1 71 VAL 71 218 218 VAL VAL B . n B 1 72 HIS 72 219 219 HIS HIS B . n B 1 73 ALA 73 220 220 ALA ALA B . n B 1 74 GLY 74 221 221 GLY GLY B . n B 1 75 PRO 75 222 222 PRO PRO B . n B 1 76 ILE 76 223 223 ILE ILE B . n B 1 77 ALA 77 224 224 ALA ALA B . n B 1 78 PRO 78 225 225 PRO PRO B . n B 1 79 GLY 79 226 226 GLY GLY B . n B 1 80 GLN 80 227 227 GLN GLN B . n B 1 81 MET 81 228 228 MET MET B . n B 1 82 ARG 82 229 229 ARG ARG B . n B 1 83 GLU 83 230 230 GLU GLU B . n B 1 84 PRO 84 231 231 PRO PRO B . n B 1 85 ARG 85 232 232 ARG ARG B . n B 1 86 GLY 86 233 233 GLY GLY B . n B 1 87 SER 87 234 234 SER SER B . n B 1 88 ASP 88 235 235 ASP ASP B . n B 1 89 ILE 89 236 236 ILE ILE B . n B 1 90 ALA 90 237 237 ALA ALA B . n B 1 91 GLY 91 238 238 GLY GLY B . n B 1 92 THR 92 239 239 THR THR B . n B 1 93 THR 93 240 240 THR THR B . n B 1 94 SER 94 241 241 SER SER B . n B 1 95 THR 95 242 242 THR THR B . n B 1 96 LEU 96 243 243 LEU LEU B . n B 1 97 GLN 97 244 244 GLN GLN B . n B 1 98 GLU 98 245 245 GLU GLU B . n B 1 99 GLN 99 246 246 GLN GLN B . n B 1 100 ILE 100 247 247 ILE ILE B . n B 1 101 GLY 101 248 248 GLY GLY B . n B 1 102 TRP 102 249 249 TRP TRP B . n B 1 103 MET 103 250 250 MET MET B . n B 1 104 THR 104 251 251 THR THR B . n B 1 105 HIS 105 252 252 HIS HIS B . n B 1 106 ASN 106 253 253 ASN ASN B . n B 1 107 PRO 107 254 254 PRO PRO B . n B 1 108 PRO 108 255 255 PRO PRO B . n B 1 109 ILE 109 256 256 ILE ILE B . n B 1 110 PRO 110 257 257 PRO PRO B . n B 1 111 VAL 111 258 258 VAL VAL B . n B 1 112 GLY 112 259 259 GLY GLY B . n B 1 113 GLU 113 260 260 GLU GLU B . n B 1 114 ILE 114 261 261 ILE ILE B . n B 1 115 TYR 115 262 262 TYR TYR B . n B 1 116 LYS 116 263 263 LYS LYS B . n B 1 117 ARG 117 264 264 ARG ARG B . n B 1 118 TRP 118 265 265 TRP TRP B . n B 1 119 ILE 119 266 266 ILE ILE B . n B 1 120 ILE 120 267 267 ILE ILE B . n B 1 121 LEU 121 268 268 LEU LEU B . n B 1 122 GLY 122 269 269 GLY GLY B . n B 1 123 LEU 123 270 270 LEU LEU B . n B 1 124 ASN 124 271 271 ASN ASN B . n B 1 125 LYS 125 272 272 LYS LYS B . n B 1 126 ILE 126 273 273 ILE ILE B . n B 1 127 VAL 127 274 274 VAL VAL B . n B 1 128 ARG 128 275 275 ARG ARG B . n B 1 129 MET 129 276 276 MET MET B . n B 1 130 TYR 130 277 277 TYR TYR B . n B 1 131 SER 131 278 278 SER SER B . n B 1 132 PRO 132 279 279 PRO PRO B . n B 1 133 THR 133 280 280 THR THR B . n B 1 134 SER 134 281 281 SER SER B . n B 1 135 ILE 135 282 282 ILE ILE B . n B 1 136 LEU 136 283 283 LEU LEU B . n B 1 137 ASP 137 284 284 ASP ASP B . n B 1 138 ILE 138 285 285 ILE ILE B . n B 1 139 ARG 139 286 286 ARG ARG B . n B 1 140 GLN 140 287 287 GLN GLN B . n B 1 141 GLY 141 288 288 GLY GLY B . n B 1 142 PRO 142 289 289 PRO PRO B . n B 1 143 LYS 143 290 290 LYS LYS B . n B 1 144 GLU 144 291 291 GLU GLU B . n B 1 145 PRO 145 292 292 PRO PRO B . n B 1 146 PHE 146 293 293 PHE PHE B . n B 1 147 ARG 147 294 294 ARG ARG B . n B 1 148 ASP 148 295 295 ASP ASP B . n B 1 149 TYR 149 296 296 TYR TYR B . n B 1 150 VAL 150 297 297 VAL VAL B . n B 1 151 ASP 151 298 298 ASP ASP B . n B 1 152 ARG 152 299 299 ARG ARG B . n B 1 153 PHE 153 300 300 PHE PHE B . n B 1 154 TYR 154 301 301 TYR TYR B . n B 1 155 LYS 155 302 302 LYS LYS B . n B 1 156 THR 156 303 303 THR THR B . n B 1 157 LEU 157 304 304 LEU LEU B . n B 1 158 ARG 158 305 305 ARG ARG B . n B 1 159 ALA 159 306 306 ALA ALA B . n B 1 160 GLU 160 307 307 GLU GLU B . n B 1 161 GLN 161 308 308 GLN GLN B . n B 1 162 ALA 162 309 309 ALA ALA B . n B 1 163 SER 163 310 310 SER SER B . n B 1 164 GLN 164 311 311 GLN GLN B . n B 1 165 GLU 165 312 312 GLU GLU B . n B 1 166 VAL 166 313 313 VAL VAL B . n B 1 167 LYS 167 314 314 LYS LYS B . n B 1 168 ASN 168 315 315 ASN ASN B . n B 1 169 TRP 169 316 316 TRP TRP B . n B 1 170 MET 170 317 317 MET MET B . n B 1 171 THR 171 318 318 THR THR B . n B 1 172 GLU 172 319 319 GLU GLU B . n B 1 173 THR 173 320 320 THR THR B . n B 1 174 LEU 174 321 321 LEU LEU B . n B 1 175 LEU 175 322 322 LEU LEU B . n B 1 176 VAL 176 323 323 VAL VAL B . n B 1 177 GLN 177 324 324 GLN GLN B . n B 1 178 ASN 178 325 325 ASN ASN B . n B 1 179 ALA 179 326 326 ALA ALA B . n B 1 180 ASN 180 327 327 ASN ASN B . n B 1 181 PRO 181 328 328 PRO PRO B . n B 1 182 ASP 182 329 329 ASP ASP B . n B 1 183 CYS 183 330 330 CYS CYS B . n B 1 184 LYS 184 331 331 LYS LYS B . n B 1 185 THR 185 332 332 THR THR B . n B 1 186 ILE 186 333 333 ILE ILE B . n B 1 187 LEU 187 334 334 LEU LEU B . n B 1 188 LYS 188 335 335 LYS LYS B . n B 1 189 ALA 189 336 336 ALA ALA B . n B 1 190 LEU 190 337 337 LEU LEU B . n B 1 191 GLY 191 338 338 GLY GLY B . n B 1 192 PRO 192 339 339 PRO PRO B . n B 1 193 GLY 193 340 340 GLY GLY B . n B 1 194 ALA 194 341 341 ALA ALA B . n B 1 195 THR 195 342 342 THR THR B . n B 1 196 LEU 196 343 343 LEU LEU B . n B 1 197 GLU 197 344 344 GLU GLU B . n B 1 198 GLU 198 345 345 GLU GLU B . n B 1 199 MET 199 346 346 MET MET B . n B 1 200 MET 200 347 347 MET MET B . n B 1 201 THR 201 348 348 THR THR B . n B 1 202 ALA 202 349 349 ALA ALA B . n B 1 203 CYS 203 350 350 CYS CYS B . n B 1 204 GLN 204 351 351 GLN GLN B . n B 1 205 GLY 205 352 352 GLY GLY B . n B 1 206 VAL 206 353 353 VAL VAL B . n B 1 207 GLY 207 354 354 GLY GLY B . n B 1 208 GLY 208 355 355 GLY GLY B . n B 1 209 PRO 209 356 356 PRO PRO B . n B 1 210 GLY 210 357 357 GLY GLY B . n B 1 211 HIS 211 358 358 HIS HIS B . n B 1 212 LYS 212 359 359 LYS LYS B . n B 1 213 ALA 213 360 360 ALA ALA B . n B 1 214 ARG 214 361 361 ARG ARG B . n B 1 215 VAL 215 362 362 VAL VAL B . n B 1 216 LEU 216 363 363 LEU LEU B . n B 1 217 ALA 217 364 364 ALA ALA B . n B 1 218 GLU 218 365 365 GLU GLU B . n B 1 219 ALA 219 366 366 ALA ALA B . n B 1 220 MET 220 367 367 MET MET B . n B 1 221 SER 221 368 368 SER SER B . n B 1 222 GLN 222 369 369 GLN GLN B . n B 1 223 VAL 223 370 370 VAL VAL B . n B 1 224 THR 224 371 371 THR THR B . n C 1 1 SER 1 148 148 SER SER C . n C 1 2 PRO 2 149 149 PRO PRO C . n C 1 3 ARG 3 150 150 ARG ARG C . n C 1 4 THR 4 151 151 THR THR C . n C 1 5 LEU 5 152 152 LEU LEU C . n C 1 6 ASN 6 153 153 ASN ASN C . n C 1 7 ALA 7 154 154 ALA ALA C . n C 1 8 TRP 8 155 155 TRP TRP C . n C 1 9 VAL 9 156 156 VAL VAL C . n C 1 10 LYS 10 157 157 LYS LYS C . n C 1 11 VAL 11 158 158 VAL VAL C . n C 1 12 VAL 12 159 159 VAL VAL C . n C 1 13 GLU 13 160 160 GLU GLU C . n C 1 14 GLU 14 161 161 GLU GLU C . n C 1 15 LYS 15 162 162 LYS LYS C . n C 1 16 ALA 16 163 163 ALA ALA C . n C 1 17 PHE 17 164 164 PHE PHE C . n C 1 18 SER 18 165 165 SER SER C . n C 1 19 PRO 19 166 166 PRO PRO C . n C 1 20 GLU 20 167 167 GLU GLU C . n C 1 21 VAL 21 168 168 VAL VAL C . n C 1 22 ILE 22 169 169 ILE ILE C . n C 1 23 PRO 23 170 170 PRO PRO C . n C 1 24 MET 24 171 171 MET MET C . n C 1 25 PHE 25 172 172 PHE PHE C . n C 1 26 SER 26 173 173 SER SER C . n C 1 27 ALA 27 174 174 ALA ALA C . n C 1 28 LEU 28 175 175 LEU LEU C . n C 1 29 SER 29 176 176 SER SER C . n C 1 30 GLU 30 177 177 GLU GLU C . n C 1 31 GLY 31 178 178 GLY GLY C . n C 1 32 ALA 32 179 179 ALA ALA C . n C 1 33 THR 33 180 180 THR THR C . n C 1 34 PRO 34 181 181 PRO PRO C . n C 1 35 GLN 35 182 182 GLN GLN C . n C 1 36 ASP 36 183 183 ASP ASP C . n C 1 37 LEU 37 184 184 LEU LEU C . n C 1 38 ASN 38 185 185 ASN ASN C . n C 1 39 THR 39 186 186 THR THR C . n C 1 40 MET 40 187 187 MET MET C . n C 1 41 LEU 41 188 188 LEU LEU C . n C 1 42 ASN 42 189 189 ASN ASN C . n C 1 43 THR 43 190 190 THR THR C . n C 1 44 VAL 44 191 191 VAL VAL C . n C 1 45 GLY 45 192 192 GLY GLY C . n C 1 46 GLY 46 193 193 GLY GLY C . n C 1 47 HIS 47 194 194 HIS HIS C . n C 1 48 GLN 48 195 195 GLN GLN C . n C 1 49 ALA 49 196 196 ALA ALA C . n C 1 50 ALA 50 197 197 ALA ALA C . n C 1 51 MET 51 198 198 MET MET C . n C 1 52 GLN 52 199 199 GLN GLN C . n C 1 53 MET 53 200 200 MET MET C . n C 1 54 LEU 54 201 201 LEU LEU C . n C 1 55 LYS 55 202 202 LYS LYS C . n C 1 56 GLU 56 203 203 GLU GLU C . n C 1 57 THR 57 204 204 THR THR C . n C 1 58 ILE 58 205 205 ILE ILE C . n C 1 59 ASN 59 206 206 ASN ASN C . n C 1 60 GLU 60 207 207 GLU GLU C . n C 1 61 GLU 61 208 208 GLU GLU C . n C 1 62 ALA 62 209 209 ALA ALA C . n C 1 63 ALA 63 210 210 ALA ALA C . n C 1 64 GLU 64 211 211 GLU GLU C . n C 1 65 TRP 65 212 212 TRP TRP C . n C 1 66 ASP 66 213 213 ASP ASP C . n C 1 67 ARG 67 214 214 ARG ARG C . n C 1 68 LEU 68 215 215 LEU LEU C . n C 1 69 HIS 69 216 216 HIS HIS C . n C 1 70 PRO 70 217 217 PRO PRO C . n C 1 71 VAL 71 218 218 VAL VAL C . n C 1 72 HIS 72 219 219 HIS HIS C . n C 1 73 ALA 73 220 220 ALA ALA C . n C 1 74 GLY 74 221 221 GLY GLY C . n C 1 75 PRO 75 222 222 PRO PRO C . n C 1 76 ILE 76 223 223 ILE ILE C . n C 1 77 ALA 77 224 224 ALA ALA C . n C 1 78 PRO 78 225 225 PRO PRO C . n C 1 79 GLY 79 226 226 GLY GLY C . n C 1 80 GLN 80 227 227 GLN GLN C . n C 1 81 MET 81 228 228 MET MET C . n C 1 82 ARG 82 229 229 ARG ARG C . n C 1 83 GLU 83 230 230 GLU GLU C . n C 1 84 PRO 84 231 231 PRO PRO C . n C 1 85 ARG 85 232 232 ARG ARG C . n C 1 86 GLY 86 233 233 GLY GLY C . n C 1 87 SER 87 234 234 SER SER C . n C 1 88 ASP 88 235 235 ASP ASP C . n C 1 89 ILE 89 236 236 ILE ILE C . n C 1 90 ALA 90 237 237 ALA ALA C . n C 1 91 GLY 91 238 238 GLY GLY C . n C 1 92 THR 92 239 239 THR THR C . n C 1 93 THR 93 240 240 THR THR C . n C 1 94 SER 94 241 241 SER SER C . n C 1 95 THR 95 242 242 THR THR C . n C 1 96 LEU 96 243 243 LEU LEU C . n C 1 97 GLN 97 244 244 GLN GLN C . n C 1 98 GLU 98 245 245 GLU GLU C . n C 1 99 GLN 99 246 246 GLN GLN C . n C 1 100 ILE 100 247 247 ILE ILE C . n C 1 101 GLY 101 248 248 GLY GLY C . n C 1 102 TRP 102 249 249 TRP TRP C . n C 1 103 MET 103 250 250 MET MET C . n C 1 104 THR 104 251 251 THR THR C . n C 1 105 HIS 105 252 252 HIS HIS C . n C 1 106 ASN 106 253 253 ASN ASN C . n C 1 107 PRO 107 254 254 PRO PRO C . n C 1 108 PRO 108 255 255 PRO PRO C . n C 1 109 ILE 109 256 256 ILE ILE C . n C 1 110 PRO 110 257 257 PRO PRO C . n C 1 111 VAL 111 258 258 VAL VAL C . n C 1 112 GLY 112 259 259 GLY GLY C . n C 1 113 GLU 113 260 260 GLU GLU C . n C 1 114 ILE 114 261 261 ILE ILE C . n C 1 115 TYR 115 262 262 TYR TYR C . n C 1 116 LYS 116 263 263 LYS LYS C . n C 1 117 ARG 117 264 264 ARG ARG C . n C 1 118 TRP 118 265 265 TRP TRP C . n C 1 119 ILE 119 266 266 ILE ILE C . n C 1 120 ILE 120 267 267 ILE ILE C . n C 1 121 LEU 121 268 268 LEU LEU C . n C 1 122 GLY 122 269 269 GLY GLY C . n C 1 123 LEU 123 270 270 LEU LEU C . n C 1 124 ASN 124 271 271 ASN ASN C . n C 1 125 LYS 125 272 272 LYS LYS C . n C 1 126 ILE 126 273 273 ILE ILE C . n C 1 127 VAL 127 274 274 VAL VAL C . n C 1 128 ARG 128 275 275 ARG ARG C . n C 1 129 MET 129 276 276 MET MET C . n C 1 130 TYR 130 277 277 TYR TYR C . n C 1 131 SER 131 278 278 SER SER C . n C 1 132 PRO 132 279 279 PRO PRO C . n C 1 133 THR 133 280 280 THR THR C . n C 1 134 SER 134 281 281 SER SER C . n C 1 135 ILE 135 282 282 ILE ILE C . n C 1 136 LEU 136 283 283 LEU LEU C . n C 1 137 ASP 137 284 284 ASP ASP C . n C 1 138 ILE 138 285 285 ILE ILE C . n C 1 139 ARG 139 286 286 ARG ARG C . n C 1 140 GLN 140 287 287 GLN GLN C . n C 1 141 GLY 141 288 288 GLY GLY C . n C 1 142 PRO 142 289 289 PRO PRO C . n C 1 143 LYS 143 290 290 LYS LYS C . n C 1 144 GLU 144 291 291 GLU GLU C . n C 1 145 PRO 145 292 292 PRO PRO C . n C 1 146 PHE 146 293 293 PHE PHE C . n C 1 147 ARG 147 294 294 ARG ARG C . n C 1 148 ASP 148 295 295 ASP ASP C . n C 1 149 TYR 149 296 296 TYR TYR C . n C 1 150 VAL 150 297 297 VAL VAL C . n C 1 151 ASP 151 298 298 ASP ASP C . n C 1 152 ARG 152 299 299 ARG ARG C . n C 1 153 PHE 153 300 300 PHE PHE C . n C 1 154 TYR 154 301 301 TYR TYR C . n C 1 155 LYS 155 302 302 LYS LYS C . n C 1 156 THR 156 303 303 THR THR C . n C 1 157 LEU 157 304 304 LEU LEU C . n C 1 158 ARG 158 305 305 ARG ARG C . n C 1 159 ALA 159 306 306 ALA ALA C . n C 1 160 GLU 160 307 307 GLU GLU C . n C 1 161 GLN 161 308 308 GLN GLN C . n C 1 162 ALA 162 309 309 ALA ALA C . n C 1 163 SER 163 310 310 SER SER C . n C 1 164 GLN 164 311 311 GLN GLN C . n C 1 165 GLU 165 312 312 GLU GLU C . n C 1 166 VAL 166 313 313 VAL VAL C . n C 1 167 LYS 167 314 314 LYS LYS C . n C 1 168 ASN 168 315 315 ASN ASN C . n C 1 169 TRP 169 316 316 TRP TRP C . n C 1 170 MET 170 317 317 MET MET C . n C 1 171 THR 171 318 318 THR THR C . n C 1 172 GLU 172 319 319 GLU GLU C . n C 1 173 THR 173 320 320 THR THR C . n C 1 174 LEU 174 321 321 LEU LEU C . n C 1 175 LEU 175 322 322 LEU LEU C . n C 1 176 VAL 176 323 323 VAL VAL C . n C 1 177 GLN 177 324 324 GLN GLN C . n C 1 178 ASN 178 325 325 ASN ASN C . n C 1 179 ALA 179 326 326 ALA ALA C . n C 1 180 ASN 180 327 327 ASN ASN C . n C 1 181 PRO 181 328 328 PRO PRO C . n C 1 182 ASP 182 329 329 ASP ASP C . n C 1 183 CYS 183 330 330 CYS CYS C . n C 1 184 LYS 184 331 331 LYS LYS C . n C 1 185 THR 185 332 332 THR THR C . n C 1 186 ILE 186 333 333 ILE ILE C . n C 1 187 LEU 187 334 334 LEU LEU C . n C 1 188 LYS 188 335 335 LYS LYS C . n C 1 189 ALA 189 336 336 ALA ALA C . n C 1 190 LEU 190 337 337 LEU LEU C . n C 1 191 GLY 191 338 338 GLY GLY C . n C 1 192 PRO 192 339 339 PRO PRO C . n C 1 193 GLY 193 340 340 GLY GLY C . n C 1 194 ALA 194 341 341 ALA ALA C . n C 1 195 THR 195 342 342 THR THR C . n C 1 196 LEU 196 343 343 LEU LEU C . n C 1 197 GLU 197 344 344 GLU GLU C . n C 1 198 GLU 198 345 345 GLU GLU C . n C 1 199 MET 199 346 346 MET MET C . n C 1 200 MET 200 347 347 MET MET C . n C 1 201 THR 201 348 348 THR THR C . n C 1 202 ALA 202 349 349 ALA ALA C . n C 1 203 CYS 203 350 350 CYS CYS C . n C 1 204 GLN 204 351 351 GLN GLN C . n C 1 205 GLY 205 352 352 GLY GLY C . n C 1 206 VAL 206 353 353 VAL VAL C . n C 1 207 GLY 207 354 354 GLY GLY C . n C 1 208 GLY 208 355 355 GLY GLY C . n C 1 209 PRO 209 356 356 PRO PRO C . n C 1 210 GLY 210 357 357 GLY GLY C . n C 1 211 HIS 211 358 358 HIS HIS C . n C 1 212 LYS 212 359 359 LYS LYS C . n C 1 213 ALA 213 360 360 ALA ALA C . n C 1 214 ARG 214 361 361 ARG ARG C . n C 1 215 VAL 215 362 362 VAL VAL C . n C 1 216 LEU 216 363 363 LEU LEU C . n C 1 217 ALA 217 364 364 ALA ALA C . n C 1 218 GLU 218 365 365 GLU GLU C . n C 1 219 ALA 219 366 366 ALA ALA C . n C 1 220 MET 220 367 367 MET MET C . n C 1 221 SER 221 368 368 SER SER C . n C 1 222 GLN 222 369 369 GLN GLN C . n C 1 223 VAL 223 370 370 VAL VAL C . n C 1 224 THR 224 371 371 THR THR C . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5L93 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L93 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5L93 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.90 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 5L93 _struct.title 'An atomic model of HIV-1 CA-SP1 reveals structures regulating assembly and maturation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L93 _struct_keywords.text 'HIV-1 capsid SP1, viral protein' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GAG_HV1N5 _struct_ref.pdbx_db_accession P12493 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQ MREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAE QASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVT ; _struct_ref.pdbx_align_begin 148 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5L93 A 1 ? 224 ? P12493 148 ? 371 ? 148 371 2 1 5L93 B 1 ? 224 ? P12493 148 ? 371 ? 148 371 3 1 5L93 C 1 ? 224 ? P12493 148 ? 371 ? 148 371 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? 0.500000 -0.866025 -0.000000 177.03689 0.866025 0.500000 -0.000000 -47.43689 -0.000000 -0.000000 1.000000 -0.00000 3 'point symmetry operation' ? ? -0.500000 -0.866025 0.000000 306.63689 0.866025 -0.500000 -0.000000 82.16311 -0.000000 0.000000 1.000000 -0.00000 4 'point symmetry operation' ? ? -1.000000 -0.000000 0.000000 259.20000 -0.000000 -1.000000 0.000000 259.20000 0.000000 0.000000 1.000000 -0.00000 5 'point symmetry operation' ? ? -0.500000 0.866025 -0.000000 82.16311 -0.866025 -0.500000 0.000000 306.63689 0.000000 -0.000000 1.000000 -0.00000 6 'point symmetry operation' ? ? 0.500000 0.866025 -0.000000 -47.43689 -0.866025 0.500000 -0.000000 177.03689 -0.000000 -0.000000 1.000000 -0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? GLU A 14 ? SER A 148 GLU A 161 1 ? 14 HELX_P HELX_P2 AA2 GLU A 20 ? GLU A 30 ? GLU A 167 GLU A 177 1 ? 11 HELX_P HELX_P3 AA3 THR A 33 ? THR A 43 ? THR A 180 THR A 190 1 ? 11 HELX_P HELX_P4 AA4 GLN A 48 ? HIS A 69 ? GLN A 195 HIS A 216 1 ? 22 HELX_P HELX_P5 AA5 ARG A 85 ? ALA A 90 ? ARG A 232 ALA A 237 1 ? 6 HELX_P HELX_P6 AA6 THR A 95 ? HIS A 105 ? THR A 242 HIS A 252 1 ? 11 HELX_P HELX_P7 AA7 PRO A 110 ? TYR A 130 ? PRO A 257 TYR A 277 1 ? 21 HELX_P HELX_P8 AA8 PRO A 145 ? GLU A 160 ? PRO A 292 GLU A 307 1 ? 16 HELX_P HELX_P9 AA9 SER A 163 ? ASN A 178 ? SER A 310 ASN A 325 1 ? 16 HELX_P HELX_P10 AB1 ASN A 180 ? ALA A 189 ? ASN A 327 ALA A 336 1 ? 10 HELX_P HELX_P11 AB2 THR A 195 ? GLY A 205 ? THR A 342 GLY A 352 1 ? 11 HELX_P HELX_P12 AB3 GLY A 208 ? THR A 224 ? GLY A 355 THR A 371 1 ? 17 HELX_P HELX_P13 AB4 PRO B 2 ? GLU B 14 ? PRO B 149 GLU B 161 1 ? 13 HELX_P HELX_P14 AB5 GLU B 20 ? GLU B 30 ? GLU B 167 GLU B 177 1 ? 11 HELX_P HELX_P15 AB6 THR B 33 ? THR B 43 ? THR B 180 THR B 190 1 ? 11 HELX_P HELX_P16 AB7 GLN B 48 ? HIS B 69 ? GLN B 195 HIS B 216 1 ? 22 HELX_P HELX_P17 AB8 ARG B 85 ? ALA B 90 ? ARG B 232 ALA B 237 1 ? 6 HELX_P HELX_P18 AB9 THR B 95 ? HIS B 105 ? THR B 242 HIS B 252 1 ? 11 HELX_P HELX_P19 AC1 PRO B 110 ? TYR B 130 ? PRO B 257 TYR B 277 1 ? 21 HELX_P HELX_P20 AC2 PRO B 145 ? GLU B 160 ? PRO B 292 GLU B 307 1 ? 16 HELX_P HELX_P21 AC3 SER B 163 ? ASN B 178 ? SER B 310 ASN B 325 1 ? 16 HELX_P HELX_P22 AC4 ASN B 180 ? ALA B 189 ? ASN B 327 ALA B 336 1 ? 10 HELX_P HELX_P23 AC5 THR B 195 ? GLY B 205 ? THR B 342 GLY B 352 1 ? 11 HELX_P HELX_P24 AC6 GLY B 208 ? THR B 224 ? GLY B 355 THR B 371 1 ? 17 HELX_P HELX_P25 AC7 PRO C 2 ? GLU C 14 ? PRO C 149 GLU C 161 1 ? 13 HELX_P HELX_P26 AC8 GLU C 20 ? GLU C 30 ? GLU C 167 GLU C 177 1 ? 11 HELX_P HELX_P27 AC9 THR C 33 ? THR C 43 ? THR C 180 THR C 190 1 ? 11 HELX_P HELX_P28 AD1 GLN C 48 ? HIS C 69 ? GLN C 195 HIS C 216 1 ? 22 HELX_P HELX_P29 AD2 ARG C 85 ? ALA C 90 ? ARG C 232 ALA C 237 1 ? 6 HELX_P HELX_P30 AD3 THR C 95 ? HIS C 105 ? THR C 242 HIS C 252 1 ? 11 HELX_P HELX_P31 AD4 PRO C 110 ? TYR C 130 ? PRO C 257 TYR C 277 1 ? 21 HELX_P HELX_P32 AD5 PRO C 145 ? GLU C 160 ? PRO C 292 GLU C 307 1 ? 16 HELX_P HELX_P33 AD6 SER C 163 ? ASN C 178 ? SER C 310 ASN C 325 1 ? 16 HELX_P HELX_P34 AD7 ASN C 180 ? ALA C 189 ? ASN C 327 ALA C 336 1 ? 10 HELX_P HELX_P35 AD8 THR C 195 ? GLY C 205 ? THR C 342 GLY C 352 1 ? 11 HELX_P HELX_P36 AD9 GLY C 208 ? THR C 224 ? GLY C 355 THR C 371 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 74 A . ? GLY 221 A PRO 75 A ? PRO 222 A 1 -4.59 2 ASN 106 A . ? ASN 253 A PRO 107 A ? PRO 254 A 1 -0.33 3 GLY 74 B . ? GLY 221 B PRO 75 B ? PRO 222 B 1 -4.61 4 ASN 106 B . ? ASN 253 B PRO 107 B ? PRO 254 B 1 -0.33 5 GLY 74 C . ? GLY 221 C PRO 75 C ? PRO 222 C 1 -4.52 6 ASN 106 C . ? ASN 253 C PRO 107 C ? PRO 254 C 1 -0.44 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 167 ? ? -130.80 -55.67 2 1 GLN A 195 ? ? -100.22 -71.89 3 1 PRO A 222 ? ? -90.29 54.68 4 1 PRO A 225 ? ? -68.20 56.70 5 1 ARG A 229 ? ? 62.20 -143.37 6 1 THR A 240 ? ? 69.02 -3.35 7 1 GLU B 167 ? ? -130.69 -55.99 8 1 GLN B 195 ? ? -100.18 -71.95 9 1 PRO B 222 ? ? -90.31 54.72 10 1 PRO B 225 ? ? -68.19 56.72 11 1 ARG B 229 ? ? 62.10 -143.40 12 1 THR B 240 ? ? 69.00 -3.45 13 1 GLU C 167 ? ? -130.84 -55.90 14 1 GLN C 195 ? ? -100.20 -71.94 15 1 PRO C 222 ? ? -90.36 54.69 16 1 PRO C 225 ? ? -68.27 56.75 17 1 ARG C 229 ? ? 62.08 -143.36 18 1 THR C 240 ? ? 68.96 -3.50 # _em_3d_fitting.entry_id 5L93 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.details _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 ? 1 148-279 1L6N 1 ? ? PDB 'experimental model' 1L6N 1 2 ? 1 280-353 3DS2 2 ? ? PDB 'experimental model' 3DS2 1 3 ? 2 354-371 1U57 3 ? ? PDB 'experimental model' 1U57 # _em_3d_reconstruction.entry_id 5L93 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 128733 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ;Virus-like particles were assembled in the presence of nucleic acid (73mer oligonucleotide, 1:10 molar ratio oligonucleotide:protein). ; _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ;Virus-like particles were obtained by in vitro assembly of a truncated Gag construct (deltaMACANCSP2) in presence of the maturation inhibitor Bevirimat ; _em_entity_assembly.name 'Human immunodeficiency virus 1' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5L93 _em_image_scans.id 1 _em_image_scans.dimension_height 3838 _em_image_scans.dimension_width 3710 _em_image_scans.frames_per_image 10 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 8-10 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? # _em_imaging.id 1 _em_imaging.entry_id 5L93 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details Nanoprobe _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 5000 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'at 20 mA' _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty YES _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate OTHER _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '10nM colloidal gold was added to the sample prior to plunge freezing.' _em_vitrification.humidity 95 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.entry_id 5L93 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5L93 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SUBTOMOGRAM AVERAGING' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 5L93 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM ? HEPES 1 2 100 mM NaCl 'Sodium Chloride' 1 3 1 mM ? EDTA 1 4 1 mM ? TCEP # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details 'CTF correction was performed using the ctfphaseflip program in IMOD prior to backprojection.' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units . _em_entity_assembly_molwt.value . # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 11676 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Human immunodeficiency virus 1' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pET11C _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ;Frames were aligned using MotionCorr. Tilts in a tilt series were exposure filtered for cumulative electron dose. Tomograms were reconstructed using IMOD. ; # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 3.4 _em_image_recording.average_exposure_time 1 _em_image_recording.details ;Number of frames ranged from 8-10 Exposure time per tilt ranged from 0.8 to 1.0 seconds ; _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower 0 _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'VOLUME SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' 'CTF determination' CTFFIND 4 1 ? ? 5 'CTF CORRECTION' 'CTF correction within IMOD' CTFPHASEFLIP ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' 'rigid body docking using Fit in map option' 'UCSF Chimera' ? ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? 'CCP4 package' ? ? 1 ? 11 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 12 'MODEL REFINEMENT' ? Coot 0.8.1 ? 1 ? 13 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 14 'FINAL EULER ASSIGNMENT' ? AV3 ? 1 ? ? 15 'FINAL EULER ASSIGNMENT' ? 'TOM Toolbox' ? 1 ? ? 16 CLASSIFICATION ? ? ? 1 ? ? 17 RECONSTRUCTION ? AV3 ? 1 ? ? 18 RECONSTRUCTION ? 'TOM Toolbox' ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 5 _em_specimen.details 'Virus-like particles were assembled in vitro' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 9606 _em_virus_natural_host.organism 'Homo sapiens' _em_virus_natural_host.strain ? # _em_volume_selection.id 1 _em_volume_selection.details 'Subtomograms were extracted from the surface of each particle according to the determined radius of the particle.' _em_volume_selection.image_processing_id 1 _em_volume_selection.method . _em_volume_selection.num_tomograms 43 _em_volume_selection.num_volumes_extracted 527528 _em_volume_selection.reference_model . # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation' Germany 'BR 3635/2-1' 1 'German Research Foundation' Germany 'KR 906/7-1' 2 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1L6N 2 'experimental model' PDB 3DS2 3 'experimental model' PDB 1U57 # _atom_sites.entry_id 5L93 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_