HEADER OXIDOREDUCTASE 09-JUN-16 5L94 TITLE THE 2.25 A CRYSTAL STRUCTURE OF CYP109E1 FROM BACILLUS MEGATERIUM IN TITLE 2 COMPLEX WITH TESTOSTERONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM (STRAIN DSM 319); SOURCE 3 ORGANISM_TAXID: 592022; SOURCE 4 STRAIN: DSM 319; SOURCE 5 GENE: BMD_3874; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACILLUS, BACTERIAL PROTEINS, BINDING SITES, CATALYSIS, CYTOCHROME P- KEYWDS 2 450 ENZYME SYSTEM, CYTOCHROME P450, HYDROXYLATION, ESCHERICHIA COLI, KEYWDS 3 HEME, LIGANDS, MOLECULAR STRUCTURE, OXIDATION-REDUCTION, OXYGEN, KEYWDS 4 PROTEIN, PROTEIN STRUCTURE, SECONDARY, STEROIDS, SUBSTRATE KEYWDS 5 SPECIFICITY, TESTOSTERONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.K.JOZWIK,A.M.W.H.THUNNISSEN REVDAT 4 10-JAN-24 5L94 1 LINK REVDAT 3 30-NOV-16 5L94 1 JRNL REVDAT 2 12-OCT-16 5L94 1 JRNL REVDAT 1 05-OCT-16 5L94 0 JRNL AUTH I.K.JOZWIK,F.M.KISS,A.ABDULMUGHNI,E.BRILL,J.ZAPP,J.PLEISS, JRNL AUTH 2 R.BERNHARDT,A.W.THUNNISSEN JRNL TITL STRUCTURAL BASIS OF STEROID BINDING AND OXIDATION BY THE JRNL TITL 2 CYTOCHROME P450 CYP109E1 FROM BACILLUS MEGATERIUM. JRNL REF FEBS J. V. 283 4128 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27686671 JRNL DOI 10.1111/FEBS.13911 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 42810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6120 - 6.9870 0.97 2640 129 0.1427 0.1835 REMARK 3 2 6.9870 - 5.5474 1.00 2671 125 0.1700 0.2265 REMARK 3 3 5.5474 - 4.8466 1.00 2679 167 0.1513 0.1865 REMARK 3 4 4.8466 - 4.4036 1.00 2653 146 0.1451 0.1573 REMARK 3 5 4.4036 - 4.0881 1.00 2707 126 0.1437 0.2017 REMARK 3 6 4.0881 - 3.8471 1.00 2665 155 0.1738 0.1981 REMARK 3 7 3.8471 - 3.6545 1.00 2679 139 0.1992 0.2316 REMARK 3 8 3.6545 - 3.4954 1.00 2703 142 0.2177 0.2662 REMARK 3 9 3.4954 - 3.3609 1.00 2675 123 0.2056 0.2663 REMARK 3 10 3.3609 - 3.2449 1.00 2684 146 0.2009 0.2202 REMARK 3 11 3.2449 - 3.1435 1.00 2674 138 0.2271 0.2889 REMARK 3 12 3.1435 - 3.0536 1.00 2694 177 0.2312 0.2782 REMARK 3 13 3.0536 - 2.9732 1.00 2633 155 0.2242 0.3056 REMARK 3 14 2.9732 - 2.9007 1.00 2668 147 0.2335 0.2407 REMARK 3 15 2.9007 - 2.8348 1.00 2688 141 0.2375 0.2933 REMARK 3 16 2.8348 - 2.7744 1.00 2649 127 0.2613 0.2899 REMARK 3 17 2.7744 - 2.7189 1.00 2755 133 0.2561 0.2107 REMARK 3 18 2.7189 - 2.6676 1.00 2691 133 0.2539 0.3481 REMARK 3 19 2.6676 - 2.6200 1.00 2675 124 0.2528 0.3374 REMARK 3 20 2.6200 - 2.5756 0.99 2679 108 0.2650 0.3109 REMARK 3 21 2.5756 - 2.5340 1.00 2727 136 0.2635 0.3433 REMARK 3 22 2.5340 - 2.4951 0.99 2643 123 0.3055 0.3389 REMARK 3 23 2.4951 - 2.4584 1.00 2670 156 0.2820 0.3440 REMARK 3 24 2.4584 - 2.4237 0.99 2677 126 0.2841 0.3566 REMARK 3 25 2.4237 - 2.3910 0.99 2603 189 0.2831 0.3373 REMARK 3 26 2.3910 - 2.3599 0.99 2647 152 0.2998 0.3658 REMARK 3 27 2.3599 - 2.3304 0.99 2689 165 0.3143 0.3262 REMARK 3 28 2.3304 - 2.3023 0.99 2624 134 0.3571 0.4463 REMARK 3 29 2.3023 - 2.2756 0.99 2632 146 0.3765 0.4093 REMARK 3 30 2.2756 - 2.2500 0.99 2663 176 0.5269 0.5721 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6352 REMARK 3 ANGLE : 1.252 8617 REMARK 3 CHIRALITY : 0.057 928 REMARK 3 PLANARITY : 0.008 1101 REMARK 3 DIHEDRAL : 16.291 2418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HELIOS OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 56.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 3350 AND 8% TACSIMATE PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.46100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 VAL A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 ASN A 14 REMARK 465 THR A 15 REMARK 465 ILE A 16 REMARK 465 PRO A 72 REMARK 465 GLN A 73 REMARK 465 ASN A 74 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 GLY B 8 REMARK 465 ILE B 9 REMARK 465 VAL B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 VAL B 13 REMARK 465 ASN B 14 REMARK 465 THR B 15 REMARK 465 ILE B 16 REMARK 465 GLN B 17 REMARK 465 THR B 18 REMARK 465 LYS B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 ARG B 22 REMARK 465 ARG B 69 REMARK 465 ARG B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 GLN B 73 REMARK 465 ASN B 74 REMARK 465 GLN B 75 REMARK 465 ARG B 76 REMARK 465 GLN B 77 REMARK 465 THR B 78 REMARK 465 ALA B 79 REMARK 465 LEU B 80 REMARK 465 ALA B 170 REMARK 465 GLY B 171 REMARK 465 PRO B 172 REMARK 465 SER B 173 REMARK 465 ASN B 174 REMARK 465 ASN B 175 REMARK 465 GLU B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 THR B 179 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 140 OD1 ASP B 166 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 359 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 35 -45.76 -138.64 REMARK 500 LEU A 138 -67.11 -135.20 REMARK 500 GLN A 226 96.32 -67.08 REMARK 500 GLU A 245 13.78 -141.04 REMARK 500 THR A 246 -74.56 -130.03 REMARK 500 ALA A 309 126.09 -39.92 REMARK 500 LEU A 398 86.02 -150.44 REMARK 500 ALA B 36 69.58 -158.78 REMARK 500 LEU B 138 -60.44 -130.41 REMARK 500 SER B 389 149.36 174.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 708 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 352 SG REMARK 620 2 HEM A 501 NA 94.3 REMARK 620 3 HEM A 501 NB 87.9 92.4 REMARK 620 4 HEM A 501 NC 86.5 178.3 89.1 REMARK 620 5 HEM A 501 ND 91.7 85.0 177.4 93.5 REMARK 620 6 TES A 502 O3 178.0 87.4 93.0 91.8 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 352 SG REMARK 620 2 HEM B 501 NA 101.7 REMARK 620 3 HEM B 501 NB 94.6 86.1 REMARK 620 4 HEM B 501 NC 90.8 166.7 88.5 REMARK 620 5 HEM B 501 ND 99.4 88.4 165.7 93.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 DBREF 5L94 A 1 404 UNP D5DKI8 D5DKI8_BACMD 1 404 DBREF 5L94 B 1 404 UNP D5DKI8 D5DKI8_BACMD 1 404 SEQADV 5L94 HIS A 405 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS A 406 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS A 407 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS A 408 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS A 409 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS A 410 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 405 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 406 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 407 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 408 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 409 UNP D5DKI8 EXPRESSION TAG SEQADV 5L94 HIS B 410 UNP D5DKI8 EXPRESSION TAG SEQRES 1 A 410 MET LYS THR GLU ARG GLU ASN GLY ILE VAL ARG GLN VAL SEQRES 2 A 410 ASN THR ILE GLN THR LYS GLU GLU ARG PHE ASN PRO PHE SEQRES 3 A 410 SER TRP TYR GLU GLU MET ARG ASN THR ALA PRO VAL GLN SEQRES 4 A 410 TRP ASP GLU GLU ARG GLN VAL TRP ASP VAL PHE HIS TYR SEQRES 5 A 410 ASP GLY VAL LYS GLU VAL LEU GLU GLN LYS ASN ILE PHE SEQRES 6 A 410 SER SER ASP ARG ARG PRO PRO GLN ASN GLN ARG GLN THR SEQRES 7 A 410 ALA LEU GLY THR SER LEU ILE ASN ILE ASP PRO PRO LYS SEQRES 8 A 410 HIS ALA GLU MET ARG ALA LEU VAL ASN LYS ALA PHE THR SEQRES 9 A 410 PRO LYS ALA MET LYS ALA TRP GLU PRO LYS ILE ALA ARG SEQRES 10 A 410 ILE THR ASN GLU LEU LEU GLN GLU VAL GLU HIS LEU GLU SEQRES 11 A 410 ASP ILE ASP ILE VAL GLU HIS LEU SER TYR PRO LEU PRO SEQRES 12 A 410 VAL MET VAL ILE ALA ASP ILE LEU GLY VAL PRO ILE GLU SEQRES 13 A 410 ASP GLN ARG GLN PHE LYS ASP TRP SER ASP ILE ILE VAL SEQRES 14 A 410 ALA GLY PRO SER ASN ASN GLU ARG GLU THR LEU GLU LYS SEQRES 15 A 410 LEU GLN GLN GLU LYS MET LYS ALA ASN ASP GLU LEU GLU SEQRES 16 A 410 THR TYR PHE TYR ARG ILE ILE GLU GLU LYS ARG THR ARG SEQRES 17 A 410 PRO GLY ASP ASP ILE ILE SER VAL LEU LEU GLN ALA LYS SEQRES 18 A 410 GLU GLU GLY LYS GLN LEU THR ASP GLU GLU ILE VAL GLY SEQRES 19 A 410 PHE SER ILE LEU LEU LEU ILE ALA GLY ASN GLU THR THR SEQRES 20 A 410 THR ASN LEU ILE SER ASN THR ILE TYR CYS LEU MET GLU SEQRES 21 A 410 ASP LYS ALA SER PHE GLU ARG LEU LYS ARG GLU LYS GLU SEQRES 22 A 410 LEU LEU PRO SER GLY ILE GLU GLU VAL LEU ARG TYR ARG SEQRES 23 A 410 SER PRO VAL GLN ALA LEU HIS ARG ILE VAL LYS GLU ASP SEQRES 24 A 410 VAL THR LEU ALA GLY LYS LYS LEU LYS ALA GLY GLU HIS SEQRES 25 A 410 VAL VAL PRO TRP MET GLY SER ALA HIS ARG ASP ALA GLU SEQRES 26 A 410 TYR PHE GLU ASP PRO GLU VAL PHE LYS ILE ASP ARG LYS SEQRES 27 A 410 PRO ASN VAL HIS MET ALA PHE GLY ARG GLY ILE HIS PHE SEQRES 28 A 410 CYS LEU GLY ALA PRO LEU ALA ARG ILE GLU ALA LYS ILE SEQRES 29 A 410 MET LEU ALA GLU LEU ILE ASP ARG TYR PRO GLN MET ASP SEQRES 30 A 410 TRP SER PRO SER PHE GLU LEU LYS PRO ILE GLU SER THR SEQRES 31 A 410 PHE VAL TYR GLY LEU LYS GLU LEU LEU ILE ARG LYS ASN SEQRES 32 A 410 VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 410 MET LYS THR GLU ARG GLU ASN GLY ILE VAL ARG GLN VAL SEQRES 2 B 410 ASN THR ILE GLN THR LYS GLU GLU ARG PHE ASN PRO PHE SEQRES 3 B 410 SER TRP TYR GLU GLU MET ARG ASN THR ALA PRO VAL GLN SEQRES 4 B 410 TRP ASP GLU GLU ARG GLN VAL TRP ASP VAL PHE HIS TYR SEQRES 5 B 410 ASP GLY VAL LYS GLU VAL LEU GLU GLN LYS ASN ILE PHE SEQRES 6 B 410 SER SER ASP ARG ARG PRO PRO GLN ASN GLN ARG GLN THR SEQRES 7 B 410 ALA LEU GLY THR SER LEU ILE ASN ILE ASP PRO PRO LYS SEQRES 8 B 410 HIS ALA GLU MET ARG ALA LEU VAL ASN LYS ALA PHE THR SEQRES 9 B 410 PRO LYS ALA MET LYS ALA TRP GLU PRO LYS ILE ALA ARG SEQRES 10 B 410 ILE THR ASN GLU LEU LEU GLN GLU VAL GLU HIS LEU GLU SEQRES 11 B 410 ASP ILE ASP ILE VAL GLU HIS LEU SER TYR PRO LEU PRO SEQRES 12 B 410 VAL MET VAL ILE ALA ASP ILE LEU GLY VAL PRO ILE GLU SEQRES 13 B 410 ASP GLN ARG GLN PHE LYS ASP TRP SER ASP ILE ILE VAL SEQRES 14 B 410 ALA GLY PRO SER ASN ASN GLU ARG GLU THR LEU GLU LYS SEQRES 15 B 410 LEU GLN GLN GLU LYS MET LYS ALA ASN ASP GLU LEU GLU SEQRES 16 B 410 THR TYR PHE TYR ARG ILE ILE GLU GLU LYS ARG THR ARG SEQRES 17 B 410 PRO GLY ASP ASP ILE ILE SER VAL LEU LEU GLN ALA LYS SEQRES 18 B 410 GLU GLU GLY LYS GLN LEU THR ASP GLU GLU ILE VAL GLY SEQRES 19 B 410 PHE SER ILE LEU LEU LEU ILE ALA GLY ASN GLU THR THR SEQRES 20 B 410 THR ASN LEU ILE SER ASN THR ILE TYR CYS LEU MET GLU SEQRES 21 B 410 ASP LYS ALA SER PHE GLU ARG LEU LYS ARG GLU LYS GLU SEQRES 22 B 410 LEU LEU PRO SER GLY ILE GLU GLU VAL LEU ARG TYR ARG SEQRES 23 B 410 SER PRO VAL GLN ALA LEU HIS ARG ILE VAL LYS GLU ASP SEQRES 24 B 410 VAL THR LEU ALA GLY LYS LYS LEU LYS ALA GLY GLU HIS SEQRES 25 B 410 VAL VAL PRO TRP MET GLY SER ALA HIS ARG ASP ALA GLU SEQRES 26 B 410 TYR PHE GLU ASP PRO GLU VAL PHE LYS ILE ASP ARG LYS SEQRES 27 B 410 PRO ASN VAL HIS MET ALA PHE GLY ARG GLY ILE HIS PHE SEQRES 28 B 410 CYS LEU GLY ALA PRO LEU ALA ARG ILE GLU ALA LYS ILE SEQRES 29 B 410 MET LEU ALA GLU LEU ILE ASP ARG TYR PRO GLN MET ASP SEQRES 30 B 410 TRP SER PRO SER PHE GLU LEU LYS PRO ILE GLU SER THR SEQRES 31 B 410 PHE VAL TYR GLY LEU LYS GLU LEU LEU ILE ARG LYS ASN SEQRES 32 B 410 VAL HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HET TES A 502 21 HET HEM B 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM TES TESTOSTERONE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 TES C19 H28 O2 FORMUL 6 HOH *243(H2 O) HELIX 1 AA1 THR A 18 PHE A 23 1 6 HELIX 2 AA2 PRO A 25 ASN A 34 1 10 HELIX 3 AA3 HIS A 51 GLN A 61 1 11 HELIX 4 AA4 ALA A 79 ILE A 87 5 9 HELIX 5 AA5 PRO A 90 LYS A 101 1 12 HELIX 6 AA6 THR A 104 ALA A 110 1 7 HELIX 7 AA7 ALA A 110 VAL A 126 1 17 HELIX 8 AA8 ILE A 134 LEU A 138 1 5 HELIX 9 AA9 TYR A 140 GLY A 152 1 13 HELIX 10 AB1 PRO A 154 GLU A 156 5 3 HELIX 11 AB2 ASP A 157 ALA A 170 1 14 HELIX 12 AB3 GLU A 176 ARG A 208 1 33 HELIX 13 AB4 ASP A 212 GLU A 223 1 12 HELIX 14 AB5 THR A 228 THR A 246 1 19 HELIX 15 AB6 THR A 246 ASP A 261 1 16 HELIX 16 AB7 ASP A 261 GLU A 271 1 11 HELIX 17 AB8 LEU A 274 ARG A 286 1 13 HELIX 18 AB9 TRP A 316 HIS A 321 1 6 HELIX 19 AC1 GLY A 354 TYR A 373 1 20 HELIX 20 AC2 PRO B 25 ALA B 36 1 12 HELIX 21 AC3 HIS B 51 GLN B 61 1 11 HELIX 22 AC4 SER B 83 ILE B 87 5 5 HELIX 23 AC5 PRO B 90 ASN B 100 1 11 HELIX 24 AC6 LYS B 101 THR B 104 5 4 HELIX 25 AC7 ALA B 110 VAL B 126 1 17 HELIX 26 AC8 ILE B 134 LEU B 138 1 5 HELIX 27 AC9 TYR B 140 GLY B 152 1 13 HELIX 28 AD1 PRO B 154 GLU B 156 5 3 HELIX 29 AD2 ASP B 157 VAL B 169 1 13 HELIX 30 AD3 GLU B 181 ARG B 208 1 28 HELIX 31 AD4 ASP B 212 ALA B 220 1 9 HELIX 32 AD5 THR B 228 ASP B 261 1 34 HELIX 33 AD6 ASP B 261 GLU B 271 1 11 HELIX 34 AD7 LEU B 274 ARG B 286 1 13 HELIX 35 AD8 TRP B 316 HIS B 321 1 6 HELIX 36 AD9 GLY B 354 TYR B 373 1 20 SHEET 1 AA1 5 VAL A 38 ASP A 41 0 SHEET 2 AA1 5 VAL A 46 VAL A 49 -1 O ASP A 48 N GLN A 39 SHEET 3 AA1 5 HIS A 312 PRO A 315 1 O VAL A 314 N TRP A 47 SHEET 4 AA1 5 ARG A 294 VAL A 296 -1 N ARG A 294 O VAL A 313 SHEET 5 AA1 5 PHE A 65 SER A 66 -1 N SER A 66 O ILE A 295 SHEET 1 AA2 3 ASP A 131 ASP A 133 0 SHEET 2 AA2 3 LEU A 399 ARG A 401 -1 O ILE A 400 N ILE A 132 SHEET 3 AA2 3 ASP A 377 TRP A 378 -1 N ASP A 377 O ARG A 401 SHEET 1 AA3 2 VAL A 300 LEU A 302 0 SHEET 2 AA3 2 LYS A 305 LEU A 307 -1 O LEU A 307 N VAL A 300 SHEET 1 AA4 5 VAL B 38 ASP B 41 0 SHEET 2 AA4 5 VAL B 46 VAL B 49 -1 O VAL B 46 N ASP B 41 SHEET 3 AA4 5 HIS B 312 PRO B 315 1 O VAL B 314 N TRP B 47 SHEET 4 AA4 5 ARG B 294 VAL B 296 -1 N ARG B 294 O VAL B 313 SHEET 5 AA4 5 PHE B 65 SER B 66 -1 N SER B 66 O ILE B 295 SHEET 1 AA5 3 ASP B 131 ASP B 133 0 SHEET 2 AA5 3 LEU B 399 ARG B 401 -1 O ILE B 400 N ILE B 132 SHEET 3 AA5 3 ASP B 377 TRP B 378 -1 N ASP B 377 O ARG B 401 SHEET 1 AA6 2 VAL B 300 LEU B 302 0 SHEET 2 AA6 2 LYS B 305 LEU B 307 -1 O LEU B 307 N VAL B 300 LINK SG CYS A 352 FE HEM A 501 1555 1555 2.36 LINK FE HEM A 501 O3 TES A 502 1555 1555 2.38 LINK SG CYS B 352 FE HEM B 501 1555 1555 2.26 CISPEP 1 PRO A 89 PRO A 90 0 -2.93 CISPEP 2 LYS A 338 PRO A 339 0 -9.68 CISPEP 3 PRO B 89 PRO B 90 0 -1.20 CISPEP 4 LYS B 338 PRO B 339 0 -7.84 SITE 1 AC1 19 LEU A 84 ILE A 85 HIS A 92 ARG A 96 SITE 2 AC1 19 ILE A 147 LEU A 238 ALA A 242 THR A 246 SITE 3 AC1 19 ARG A 294 ALA A 344 PHE A 345 GLY A 346 SITE 4 AC1 19 HIS A 350 CYS A 352 GLY A 354 ALA A 358 SITE 5 AC1 19 TES A 502 HOH A 612 HOH A 682 SITE 1 AC2 4 ILE A 241 VAL A 289 PHE A 391 HEM A 501 SITE 1 AC3 22 LEU B 84 ILE B 85 HIS B 92 ARG B 96 SITE 2 AC3 22 ILE B 147 ALA B 242 GLY B 243 THR B 246 SITE 3 AC3 22 THR B 247 LEU B 292 ARG B 294 ALA B 344 SITE 4 AC3 22 PHE B 345 GLY B 346 ILE B 349 HIS B 350 SITE 5 AC3 22 CYS B 352 GLY B 354 ALA B 358 HOH B 624 SITE 6 AC3 22 HOH B 638 HOH B 678 CRYST1 60.359 134.922 61.870 90.00 113.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016568 0.000000 0.007318 0.00000 SCALE2 0.000000 0.007412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017669 0.00000