HEADER OXIDOREDUCTASE 09-JUN-16 5L9A TITLE L-THREONINE DEHYDROGENASE FROM TRYPANOSOMA BRUCEI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE 3-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.103; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS APO-ENZYME, ROSSMANN FOLD, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.ERSKINE,J.B.COOPER,E.ADJOGATSE,J.KELLY,S.P.WOOD REVDAT 4 10-JAN-24 5L9A 1 REMARK REVDAT 3 10-OCT-18 5L9A 1 JRNL REVDAT 2 19-SEP-18 5L9A 1 JRNL REVDAT 1 22-JUN-16 5L9A 0 JRNL AUTH E.ADJOGATSE,P.ERSKINE,S.A.WELLS,J.M.KELLY,J.D.WILDEN, JRNL AUTH 2 A.W.E.CHAN,D.SELWOOD,A.COKER,S.WOOD,J.B.COOPER JRNL TITL STRUCTURE AND FUNCTION OF L-THREONINE-3-DEHYDROGENASE FROM JRNL TITL 2 THE PARASITIC PROTOZOAN TRYPANOSOMA BRUCEI REVEALED BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY AND GEOMETRIC SIMULATIONS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 861 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30198897 JRNL DOI 10.1107/S2059798318009208 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 103550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.103 REMARK 3 R VALUE (WORKING SET) : 0.100 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 1335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.266 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5339 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5106 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7275 ; 2.070 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11828 ; 1.325 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 685 ; 6.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;35.633 ;24.018 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 943 ;13.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 810 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6062 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1144 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2676 ; 1.525 ; 1.090 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2673 ; 1.491 ; 1.088 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3378 ; 1.837 ; 1.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3379 ; 1.837 ; 1.643 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2663 ; 3.286 ; 1.503 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2664 ; 3.286 ; 1.504 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3897 ; 3.800 ; 2.085 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7685 ; 5.313 ;13.457 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6662 ; 4.115 ;10.740 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10445 ; 4.414 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 333 ;40.177 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 11313 ;11.902 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 53.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YY7 REMARK 200 REMARK 200 REMARK: THIN PLATES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20 % W/V PEG 10K, REMARK 280 TDH 2.0 MG/ML, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 237 O HOH A 601 1.98 REMARK 500 O HOH A 740 O HOH A 1018 2.09 REMARK 500 O HOH B 611 O HOH B 917 2.13 REMARK 500 O HOH A 605 O HOH A 806 2.14 REMARK 500 O HOH B 750 O HOH B 761 2.15 REMARK 500 O HOH A 601 O HOH A 935 2.16 REMARK 500 ND2 ASN A 291 O HOH A 602 2.16 REMARK 500 NH1 ARG A 253 O HOH A 603 2.17 REMARK 500 OD1 ASP B 24 O HOH B 601 2.17 REMARK 500 O HOH A 989 O HOH A 1014 2.18 REMARK 500 O HOH B 1044 O HOH B 1139 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1153 O HOH B 759 1554 2.09 REMARK 500 O HOH A 640 O HOH B 768 1554 2.18 REMARK 500 O HOH A 708 O HOH B 1187 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 129 CD LYS A 129 CE 0.182 REMARK 500 GLU A 306 CG GLU A 306 CD 0.101 REMARK 500 GLU A 306 CD GLU A 306 OE1 0.081 REMARK 500 SER B 211 CB SER B 211 OG 0.113 REMARK 500 GLU B 267 CD GLU B 267 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 81 CB - CG - SD ANGL. DEV. = -21.4 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 VAL B 33 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP B 35 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 PHE B 62 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 101 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 167 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 237 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 290 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 97 -60.20 -109.22 REMARK 500 SER A 118 -160.33 -107.45 REMARK 500 SER B 118 -160.72 -104.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1262 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1263 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1264 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1265 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1266 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1267 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1268 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1270 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1271 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1272 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1273 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1274 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1275 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1276 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1277 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A1278 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1279 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1282 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A1283 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A1284 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH A1285 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A1286 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH B1223 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B1224 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1225 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1226 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1227 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1228 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1229 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1230 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1231 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B1232 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1233 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1234 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B1235 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1236 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B1237 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1238 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B1239 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1240 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B1241 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1242 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B1243 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B1244 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B1245 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B1246 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH B1247 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH B1248 DISTANCE = 9.11 ANGSTROMS REMARK 525 HOH B1249 DISTANCE = 9.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 501 DBREF 5L9A A 3 321 UNP Q7YW97 Q7YW97_9TRYP 14 332 DBREF 5L9A B 3 321 UNP Q7YW97 Q7YW97_9TRYP 14 332 SEQADV 5L9A HIS A 1 UNP Q7YW97 EXPRESSION TAG SEQADV 5L9A MET A 2 UNP Q7YW97 EXPRESSION TAG SEQADV 5L9A HIS B 1 UNP Q7YW97 EXPRESSION TAG SEQADV 5L9A MET B 2 UNP Q7YW97 EXPRESSION TAG SEQRES 1 A 321 HIS MET PRO ARG VAL LEU VAL THR GLY ALA LEU GLY GLN SEQRES 2 A 321 ILE GLY THR ASP LEU SER LEU ALA LEU ARG ASP LYS PHE SEQRES 3 A 321 GLY ALA ASP SER VAL LEU VAL SER ASP VAL VAL GLU PRO SEQRES 4 A 321 GLY ALA LYS HIS PRO LEU ALA GLY LEU LYS GLY VAL GLU SEQRES 5 A 321 LYS LEU ASP CYS LEU ASP SER ASN GLY PHE GLU LYS LEU SEQRES 6 A 321 VAL LYS GLU PHE LYS PRO THR TRP MET TYR HIS LEU PRO SEQRES 7 A 321 ALA ILE MET SER VAL ARG GLY GLU ALA GLU PRO ASP LEU SEQRES 8 A 321 ALA MET ASP ILE ASN VAL ASN THR THR ARG TYR ALA LEU SEQRES 9 A 321 GLU LEU ALA ARG LYS TYR ASN ILE ARG ILE PHE ILE PRO SEQRES 10 A 321 SER THR ILE ALA ALA PHE GLY ASP LYS CYS GLY LYS THR SEQRES 11 A 321 MET THR LYS ASP ASP THR ILE MET ASN PRO SER THR VAL SEQRES 12 A 321 TYR GLY VAL THR LYS VAL TYR THR GLU LEU LEU GLY THR SEQRES 13 A 321 TRP TYR ARG GLN LYS TYR GLY VAL ASP PHE ARG SER VAL SEQRES 14 A 321 ARG LEU PRO GLY ILE ILE SER ALA ALA THR LEU PRO GLY SEQRES 15 A 321 GLY GLY ALA THR ASP TYR ALA ILE HIS MET TYR HIS SER SEQRES 16 A 321 ALA LEU LEU GLN LYS LYS CYS VAL CYS PRO VAL LEU PRO SEQRES 17 A 321 TYR GLU SER LEU PRO MET MET TYR MET PRO ASP THR LEU SEQRES 18 A 321 ASN SER LEU VAL LYS ILE MET GLU ALA PRO LEU GLU LYS SEQRES 19 A 321 LEU THR ARG THR VAL TYR ASN ILE THR GLY PHE SER PHE SEQRES 20 A 321 SER PRO SER GLU LEU ARG PHE SER ILE GLU ARG CYS THR SEQRES 21 A 321 ASP ARG THR ILE GLU VAL GLU TYR VAL GLU GLY PRO ALA SEQRES 22 A 321 GLN LYS ILE ALA ASN SER TRP PRO ASP SER LEU ASP ASP SEQRES 23 A 321 SER ASN ALA ARG ASN ASP TRP GLY HIS GLN VAL LYS TYR SEQRES 24 A 321 ASP ILE ASP MET MET SER GLU ASP MET LEU ARG GLN ILE SEQRES 25 A 321 PRO ILE LEU HIS GLY LEU PRO SER LEU SEQRES 1 B 321 HIS MET PRO ARG VAL LEU VAL THR GLY ALA LEU GLY GLN SEQRES 2 B 321 ILE GLY THR ASP LEU SER LEU ALA LEU ARG ASP LYS PHE SEQRES 3 B 321 GLY ALA ASP SER VAL LEU VAL SER ASP VAL VAL GLU PRO SEQRES 4 B 321 GLY ALA LYS HIS PRO LEU ALA GLY LEU LYS GLY VAL GLU SEQRES 5 B 321 LYS LEU ASP CYS LEU ASP SER ASN GLY PHE GLU LYS LEU SEQRES 6 B 321 VAL LYS GLU PHE LYS PRO THR TRP MET TYR HIS LEU PRO SEQRES 7 B 321 ALA ILE MET SER VAL ARG GLY GLU ALA GLU PRO ASP LEU SEQRES 8 B 321 ALA MET ASP ILE ASN VAL ASN THR THR ARG TYR ALA LEU SEQRES 9 B 321 GLU LEU ALA ARG LYS TYR ASN ILE ARG ILE PHE ILE PRO SEQRES 10 B 321 SER THR ILE ALA ALA PHE GLY ASP LYS CYS GLY LYS THR SEQRES 11 B 321 MET THR LYS ASP ASP THR ILE MET ASN PRO SER THR VAL SEQRES 12 B 321 TYR GLY VAL THR LYS VAL TYR THR GLU LEU LEU GLY THR SEQRES 13 B 321 TRP TYR ARG GLN LYS TYR GLY VAL ASP PHE ARG SER VAL SEQRES 14 B 321 ARG LEU PRO GLY ILE ILE SER ALA ALA THR LEU PRO GLY SEQRES 15 B 321 GLY GLY ALA THR ASP TYR ALA ILE HIS MET TYR HIS SER SEQRES 16 B 321 ALA LEU LEU GLN LYS LYS CYS VAL CYS PRO VAL LEU PRO SEQRES 17 B 321 TYR GLU SER LEU PRO MET MET TYR MET PRO ASP THR LEU SEQRES 18 B 321 ASN SER LEU VAL LYS ILE MET GLU ALA PRO LEU GLU LYS SEQRES 19 B 321 LEU THR ARG THR VAL TYR ASN ILE THR GLY PHE SER PHE SEQRES 20 B 321 SER PRO SER GLU LEU ARG PHE SER ILE GLU ARG CYS THR SEQRES 21 B 321 ASP ARG THR ILE GLU VAL GLU TYR VAL GLU GLY PRO ALA SEQRES 22 B 321 GLN LYS ILE ALA ASN SER TRP PRO ASP SER LEU ASP ASP SEQRES 23 B 321 SER ASN ALA ARG ASN ASP TRP GLY HIS GLN VAL LYS TYR SEQRES 24 B 321 ASP ILE ASP MET MET SER GLU ASP MET LEU ARG GLN ILE SEQRES 25 B 321 PRO ILE LEU HIS GLY LEU PRO SER LEU HET ACT A 501 4 HET ACT B 501 4 HETNAM ACT ACETATE ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *1335(H2 O) HELIX 1 AA1 GLY A 12 GLY A 27 1 16 HELIX 2 AA2 ASP A 58 LYS A 70 1 13 HELIX 3 AA3 MET A 81 GLU A 88 1 8 HELIX 4 AA4 GLU A 88 VAL A 97 1 10 HELIX 5 AA5 VAL A 97 TYR A 110 1 14 HELIX 6 AA6 ALA A 121 PHE A 123 5 3 HELIX 7 AA7 THR A 142 GLY A 163 1 22 HELIX 8 AA8 THR A 186 GLN A 199 1 14 HELIX 9 AA9 MET A 217 ALA A 230 1 14 HELIX 10 AB1 PRO A 231 LEU A 235 5 5 HELIX 11 AB2 SER A 248 ASP A 261 1 14 HELIX 12 AB3 GLY A 271 SER A 279 1 9 HELIX 13 AB4 ASP A 286 GLY A 294 1 9 HELIX 14 AB5 ASP A 300 GLY A 317 1 18 HELIX 15 AB6 GLY B 12 GLY B 27 1 16 HELIX 16 AB7 ASP B 58 LYS B 70 1 13 HELIX 17 AB8 MET B 81 GLU B 88 1 8 HELIX 18 AB9 GLU B 88 VAL B 97 1 10 HELIX 19 AC1 VAL B 97 TYR B 110 1 14 HELIX 20 AC2 ALA B 121 PHE B 123 5 3 HELIX 21 AC3 THR B 142 GLY B 163 1 22 HELIX 22 AC4 THR B 186 GLN B 199 1 14 HELIX 23 AC5 MET B 217 ALA B 230 1 14 HELIX 24 AC6 PRO B 231 LEU B 235 5 5 HELIX 25 AC7 SER B 248 ASP B 261 1 14 HELIX 26 AC8 GLY B 271 SER B 279 1 9 HELIX 27 AC9 ASP B 286 GLY B 294 1 9 HELIX 28 AD1 ASP B 300 GLY B 317 1 18 SHEET 1 AA1 7 VAL A 51 LYS A 53 0 SHEET 2 AA1 7 VAL A 31 ASP A 35 1 N VAL A 33 O GLU A 52 SHEET 3 AA1 7 VAL A 5 THR A 8 1 N VAL A 5 O LEU A 32 SHEET 4 AA1 7 TRP A 73 HIS A 76 1 O TYR A 75 N LEU A 6 SHEET 5 AA1 7 ARG A 113 PHE A 115 1 O PHE A 115 N MET A 74 SHEET 6 AA1 7 PHE A 166 LEU A 171 1 O ARG A 167 N ILE A 114 SHEET 7 AA1 7 SER A 118 THR A 119 1 N SER A 118 O VAL A 169 SHEET 1 AA2 7 VAL A 51 LYS A 53 0 SHEET 2 AA2 7 VAL A 31 ASP A 35 1 N VAL A 33 O GLU A 52 SHEET 3 AA2 7 VAL A 5 THR A 8 1 N VAL A 5 O LEU A 32 SHEET 4 AA2 7 TRP A 73 HIS A 76 1 O TYR A 75 N LEU A 6 SHEET 5 AA2 7 ARG A 113 PHE A 115 1 O PHE A 115 N MET A 74 SHEET 6 AA2 7 PHE A 166 LEU A 171 1 O ARG A 167 N ILE A 114 SHEET 7 AA2 7 VAL A 239 ASN A 241 1 O TYR A 240 N ARG A 170 SHEET 1 AA3 3 GLY A 173 ILE A 175 0 SHEET 2 AA3 3 LEU A 212 TYR A 216 1 O MET A 215 N ILE A 175 SHEET 3 AA3 3 PHE A 245 PHE A 247 -1 O PHE A 245 N MET A 214 SHEET 1 AA4 2 CYS A 202 CYS A 204 0 SHEET 2 AA4 2 VAL A 266 TYR A 268 1 O GLU A 267 N CYS A 204 SHEET 1 AA5 7 VAL B 51 LYS B 53 0 SHEET 2 AA5 7 VAL B 31 ASP B 35 1 N VAL B 33 O GLU B 52 SHEET 3 AA5 7 VAL B 5 THR B 8 1 N VAL B 7 O LEU B 32 SHEET 4 AA5 7 TRP B 73 HIS B 76 1 O TYR B 75 N LEU B 6 SHEET 5 AA5 7 ARG B 113 PHE B 115 1 O PHE B 115 N MET B 74 SHEET 6 AA5 7 PHE B 166 LEU B 171 1 O ARG B 167 N ILE B 114 SHEET 7 AA5 7 SER B 118 THR B 119 1 N SER B 118 O VAL B 169 SHEET 1 AA6 7 VAL B 51 LYS B 53 0 SHEET 2 AA6 7 VAL B 31 ASP B 35 1 N VAL B 33 O GLU B 52 SHEET 3 AA6 7 VAL B 5 THR B 8 1 N VAL B 7 O LEU B 32 SHEET 4 AA6 7 TRP B 73 HIS B 76 1 O TYR B 75 N LEU B 6 SHEET 5 AA6 7 ARG B 113 PHE B 115 1 O PHE B 115 N MET B 74 SHEET 6 AA6 7 PHE B 166 LEU B 171 1 O ARG B 167 N ILE B 114 SHEET 7 AA6 7 VAL B 239 ASN B 241 1 O TYR B 240 N ARG B 170 SHEET 1 AA7 3 GLY B 173 ILE B 175 0 SHEET 2 AA7 3 LEU B 212 TYR B 216 1 O PRO B 213 N GLY B 173 SHEET 3 AA7 3 PHE B 245 PHE B 247 -1 O PHE B 245 N MET B 214 SHEET 1 AA8 2 CYS B 202 CYS B 204 0 SHEET 2 AA8 2 VAL B 266 TYR B 268 1 O GLU B 267 N CYS B 204 SITE 1 AC1 4 MET A 81 SER A 82 HOH A 717 HOH A 890 SITE 1 AC2 5 MET B 81 SER B 82 HOH B 734 HOH B 874 SITE 2 AC2 5 HOH B 996 CRYST1 46.985 57.722 70.074 72.46 70.38 73.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021283 -0.006426 -0.006295 0.00000 SCALE2 0.000000 0.018097 -0.004210 0.00000 SCALE3 0.000000 0.000000 0.015555 0.00000