HEADER TRANSPORT PROTEIN 10-JUN-16 5L9I TITLE CRYSTAL STRUCTURE OF THE PERIPLASMIC BINDING PROTEIN MOTA IN COMPLEX TITLE 2 WITH DFG FROM A. TUMEFACIENS B6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. B6; SOURCE 3 ORGANISM_TAXID: 1183423; SOURCE 4 GENE: ASB65_13110; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PERIPLASMIC BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.MARTY,S.MORERA REVDAT 4 10-JAN-24 5L9I 1 REMARK REVDAT 3 06-SEP-17 5L9I 1 REMARK REVDAT 2 16-NOV-16 5L9I 1 JRNL REVDAT 1 21-SEP-16 5L9I 0 JRNL AUTH L.MARTY,A.VIGOUROUX,M.AUMONT-NICAISE,Y.DESSAUX,D.FAURE, JRNL AUTH 2 S.MORERA JRNL TITL STRUCTURAL BASIS FOR HIGH SPECIFICITY OF AMADORI COMPOUND JRNL TITL 2 AND MANNOPINE OPINE BINDING IN BACTERIAL PATHOGENS. JRNL REF J.BIOL.CHEM. V. 291 22638 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27609514 JRNL DOI 10.1074/JBC.M116.745562 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2629 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3886 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2490 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3692 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 194 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86930 REMARK 3 B22 (A**2) : 1.86930 REMARK 3 B33 (A**2) : -3.73870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.138 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.125 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5216 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7076 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1741 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 140 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 746 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5216 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 672 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6145 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.1378 48.5118 -0.1823 REMARK 3 T TENSOR REMARK 3 T11: -0.4974 T22: -0.3413 REMARK 3 T33: -0.4266 T12: 0.0801 REMARK 3 T13: -0.0525 T23: -0.1190 REMARK 3 L TENSOR REMARK 3 L11: 2.8202 L22: 0.9068 REMARK 3 L33: 2.0436 L12: -0.6241 REMARK 3 L13: 0.9794 L23: -0.6692 REMARK 3 S TENSOR REMARK 3 S11: 0.3475 S12: 0.6276 S13: -0.4398 REMARK 3 S21: -0.0891 S22: -0.1740 S23: 0.1138 REMARK 3 S31: 0.1501 S32: 0.3620 S33: -0.1735 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 46.6027 83.5112 -12.7351 REMARK 3 T TENSOR REMARK 3 T11: -0.4731 T22: -0.5170 REMARK 3 T33: -0.3682 T12: 0.0486 REMARK 3 T13: 0.1079 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.5757 L22: 2.3270 REMARK 3 L33: 2.4064 L12: 0.1385 REMARK 3 L13: 0.1362 L23: -0.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.0118 S13: 0.0709 REMARK 3 S21: 0.3112 S22: 0.1693 S23: 0.4438 REMARK 3 S31: -0.2615 S32: -0.1500 S33: -0.2125 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.480 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 4K, 0.1 M MES, 0.2 M CACL2, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.03000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.51500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.54500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 MET B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PRO B 25 REMARK 465 ARG B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 ARG B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 -155.52 -130.28 REMARK 500 ASP A 84 -64.56 -102.68 REMARK 500 SER B 36 -155.46 -131.28 REMARK 500 ASP B 84 -65.07 -102.14 REMARK 500 LEU B 352 102.79 -57.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SNW A 401 OXT REMARK 620 2 HOH A 519 O 128.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SNW A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SNW B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L9G RELATED DB: PDB REMARK 900 5L9G IS THE SAME PROTEIN MOTA IN A DIFFERENT COMPLEX DBREF1 5L9I A 31 354 UNP A0A109C781_RHIRD DBREF2 5L9I A A0A109C781 24 347 DBREF1 5L9I B 31 354 UNP A0A109C781_RHIRD DBREF2 5L9I B A0A109C781 24 347 SEQADV 5L9I MET A 10 UNP A0A109C78 INITIATING METHIONINE SEQADV 5L9I GLY A 11 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER A 12 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER A 13 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 14 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 15 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 16 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 17 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 18 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 19 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER A 20 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER A 21 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I GLY A 22 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I LEU A 23 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I VAL A 24 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I PRO A 25 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I ARG A 26 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I GLY A 27 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER A 28 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 29 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I MET A 30 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 355 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 356 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 357 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 358 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 359 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS A 360 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I MET B 10 UNP A0A109C78 INITIATING METHIONINE SEQADV 5L9I GLY B 11 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER B 12 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER B 13 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 14 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 15 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 16 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 17 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 18 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 19 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER B 20 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER B 21 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I GLY B 22 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I LEU B 23 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I VAL B 24 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I PRO B 25 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I ARG B 26 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I GLY B 27 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I SER B 28 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 29 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I MET B 30 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 355 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 356 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 357 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 358 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 359 UNP A0A109C78 EXPRESSION TAG SEQADV 5L9I HIS B 360 UNP A0A109C78 EXPRESSION TAG SEQRES 1 A 351 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 351 LEU VAL PRO ARG GLY SER HIS MET ASP VAL VAL ILE ALA SEQRES 3 A 351 SER SER GLY GLY GLY TRP GLN GLU ALA GLN ASP LYS ALA SEQRES 4 A 351 LEU TRP ALA PRO ALA ALA LYS ALA LEU ASN ILE THR TYR SEQRES 5 A 351 THR GLN ASP THR PHE GLN ASN TRP ALA GLU ALA ARG ALA SEQRES 6 A 351 GLN VAL GLU SER GLY SER VAL THR TRP ASP ILE ILE GLN SEQRES 7 A 351 ILE GLY ILE ALA ASP GLU PRO GLN ALA LYS ALA ALA GLY SEQRES 8 A 351 VAL LEU GLU LYS LEU ASP PRO ASP ILE VAL ASN LYS ALA SEQRES 9 A 351 ASP PHE PRO PRO GLY SER VAL THR ASP SER PHE VAL ALA SEQRES 10 A 351 ASN SER ASN TYR SER THR LEU ILE ALA TRP ASN LYS LYS SEQRES 11 A 351 THR TYR GLY ASP ASN GLY PRO LYS SER MET ALA ASP PHE SEQRES 12 A 351 PHE ASP VAL LYS LYS PHE PRO GLY LYS ARG ALA LEU TRP SEQRES 13 A 351 ASN GLN PRO ILE GLY MET ILE GLU ALA ALA ALA LEU ALA SEQRES 14 A 351 LEU GLY THR PRO ARG ASP LYS VAL TYR GLU PHE LEU SER SEQRES 15 A 351 THR GLU GLU GLY ARG LYS ALA ALA ILE ALA LYS LEU THR SEQRES 16 A 351 GLU LEU ALA PRO SER VAL SER VAL TRP TRP GLU SER GLY SEQRES 17 A 351 ALA GLN ALA ALA GLN LEU ILE LYS ASP GLY GLU VAL ASP SEQRES 18 A 351 MET ILE ILE THR TRP GLY GLY ARG VAL GLN GLY ALA ILE SEQRES 19 A 351 ASN ASP GLY ALA ASN PHE ALA TYR THR PHE ASN ASP ALA SEQRES 20 A 351 GLN LEU GLY THR ASP GLY TYR ALA ILE VAL LYS GLY ALA SEQRES 21 A 351 PRO HIS ARG ASP ALA ALA MET ARG PHE LEU LYS GLU MET SEQRES 22 A 351 SER LYS ALA GLU TYR GLN LYS ASP LEU PRO ASN SER PHE SEQRES 23 A 351 ALA THR ALA PRO ALA ASN MET LYS ALA TYR ASP LEU ALA SEQRES 24 A 351 LYS TYR THR PRO GLU LYS MET ALA THR MET ALA SER ALA SEQRES 25 A 351 PRO GLU ASN VAL ALA VAL GLN TYR SER VAL ASP PRO ASN SEQRES 26 A 351 PHE TRP ALA LYS HIS ALA LYS TRP ALA SER GLU ALA TYR SEQRES 27 A 351 ASP ASN VAL ARG LEU SER ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 351 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 351 LEU VAL PRO ARG GLY SER HIS MET ASP VAL VAL ILE ALA SEQRES 3 B 351 SER SER GLY GLY GLY TRP GLN GLU ALA GLN ASP LYS ALA SEQRES 4 B 351 LEU TRP ALA PRO ALA ALA LYS ALA LEU ASN ILE THR TYR SEQRES 5 B 351 THR GLN ASP THR PHE GLN ASN TRP ALA GLU ALA ARG ALA SEQRES 6 B 351 GLN VAL GLU SER GLY SER VAL THR TRP ASP ILE ILE GLN SEQRES 7 B 351 ILE GLY ILE ALA ASP GLU PRO GLN ALA LYS ALA ALA GLY SEQRES 8 B 351 VAL LEU GLU LYS LEU ASP PRO ASP ILE VAL ASN LYS ALA SEQRES 9 B 351 ASP PHE PRO PRO GLY SER VAL THR ASP SER PHE VAL ALA SEQRES 10 B 351 ASN SER ASN TYR SER THR LEU ILE ALA TRP ASN LYS LYS SEQRES 11 B 351 THR TYR GLY ASP ASN GLY PRO LYS SER MET ALA ASP PHE SEQRES 12 B 351 PHE ASP VAL LYS LYS PHE PRO GLY LYS ARG ALA LEU TRP SEQRES 13 B 351 ASN GLN PRO ILE GLY MET ILE GLU ALA ALA ALA LEU ALA SEQRES 14 B 351 LEU GLY THR PRO ARG ASP LYS VAL TYR GLU PHE LEU SER SEQRES 15 B 351 THR GLU GLU GLY ARG LYS ALA ALA ILE ALA LYS LEU THR SEQRES 16 B 351 GLU LEU ALA PRO SER VAL SER VAL TRP TRP GLU SER GLY SEQRES 17 B 351 ALA GLN ALA ALA GLN LEU ILE LYS ASP GLY GLU VAL ASP SEQRES 18 B 351 MET ILE ILE THR TRP GLY GLY ARG VAL GLN GLY ALA ILE SEQRES 19 B 351 ASN ASP GLY ALA ASN PHE ALA TYR THR PHE ASN ASP ALA SEQRES 20 B 351 GLN LEU GLY THR ASP GLY TYR ALA ILE VAL LYS GLY ALA SEQRES 21 B 351 PRO HIS ARG ASP ALA ALA MET ARG PHE LEU LYS GLU MET SEQRES 22 B 351 SER LYS ALA GLU TYR GLN LYS ASP LEU PRO ASN SER PHE SEQRES 23 B 351 ALA THR ALA PRO ALA ASN MET LYS ALA TYR ASP LEU ALA SEQRES 24 B 351 LYS TYR THR PRO GLU LYS MET ALA THR MET ALA SER ALA SEQRES 25 B 351 PRO GLU ASN VAL ALA VAL GLN TYR SER VAL ASP PRO ASN SEQRES 26 B 351 PHE TRP ALA LYS HIS ALA LYS TRP ALA SER GLU ALA TYR SEQRES 27 B 351 ASP ASN VAL ARG LEU SER ARG HIS HIS HIS HIS HIS HIS HET SNW A 401 21 HET PEG A 402 7 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET CA A 406 1 HET CA A 407 1 HET SNW B 401 21 HET PEG B 402 7 HET PEG B 403 7 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET CA B 407 1 HETNAM SNW DEOXYFRUCTOSYLGLUTAMINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN SNW SANTHOPINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SNW 2(C11 H20 N2 O8) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 8 CA 3(CA 2+) FORMUL 17 HOH *288(H2 O) HELIX 1 AA1 GLY A 38 LEU A 49 1 12 HELIX 2 AA2 LEU A 49 LEU A 57 1 9 HELIX 3 AA3 TRP A 69 GLY A 79 1 11 HELIX 4 AA4 ASP A 92 ALA A 99 1 8 HELIX 5 AA5 ASN A 111 PHE A 115 5 5 HELIX 6 AA6 LYS A 138 GLY A 142 1 5 HELIX 7 AA7 SER A 148 PHE A 153 1 6 HELIX 8 AA8 GLY A 170 LEU A 179 1 10 HELIX 9 AA9 PRO A 182 ASP A 184 5 3 HELIX 10 AB1 LYS A 185 LEU A 190 1 6 HELIX 11 AB2 THR A 192 ALA A 207 1 16 HELIX 12 AB3 SER A 216 ASP A 226 1 11 HELIX 13 AB4 GLY A 236 ASP A 245 1 10 HELIX 14 AB5 HIS A 271 SER A 283 1 13 HELIX 15 AB6 LYS A 284 LYS A 289 1 6 HELIX 16 AB7 MET A 302 LYS A 309 1 8 HELIX 17 AB8 THR A 311 ALA A 316 1 6 HELIX 18 AB9 ALA A 321 ALA A 326 1 6 HELIX 19 AC1 ASP A 332 SER A 353 1 22 HELIX 20 AC2 GLY B 38 LEU B 49 1 12 HELIX 21 AC3 LEU B 49 ASN B 58 1 10 HELIX 22 AC4 TRP B 69 GLY B 79 1 11 HELIX 23 AC5 ASP B 92 ALA B 99 1 8 HELIX 24 AC6 ASN B 111 PHE B 115 5 5 HELIX 25 AC7 LYS B 138 GLY B 142 1 5 HELIX 26 AC8 SER B 148 PHE B 153 1 6 HELIX 27 AC9 GLY B 170 LEU B 179 1 10 HELIX 28 AD1 PRO B 182 ASP B 184 5 3 HELIX 29 AD2 LYS B 185 LEU B 190 1 6 HELIX 30 AD3 THR B 192 ALA B 207 1 16 HELIX 31 AD4 SER B 216 ASP B 226 1 11 HELIX 32 AD5 GLY B 236 ASP B 245 1 10 HELIX 33 AD6 HIS B 271 SER B 283 1 13 HELIX 34 AD7 LYS B 284 LYS B 289 1 6 HELIX 35 AD8 MET B 302 LYS B 309 1 8 HELIX 36 AD9 THR B 311 THR B 317 1 7 HELIX 37 AE1 ALA B 321 ALA B 326 1 6 HELIX 38 AE2 ASP B 332 LEU B 352 1 21 SHEET 1 AA1 6 TYR A 61 THR A 65 0 SHEET 2 AA1 6 VAL A 32 SER A 36 1 N VAL A 32 O THR A 62 SHEET 3 AA1 6 ILE A 85 GLY A 89 1 O GLN A 87 N ALA A 35 SHEET 4 AA1 6 PHE A 249 ILE A 265 -1 O ALA A 264 N ILE A 86 SHEET 5 AA1 6 VAL A 125 ASN A 137 -1 N TYR A 130 O GLY A 259 SHEET 6 AA1 6 ALA A 298 PRO A 299 -1 O ALA A 298 N ASN A 129 SHEET 1 AA2 6 VAL A 210 TRP A 214 0 SHEET 2 AA2 6 ARG A 162 TRP A 165 1 N ARG A 162 O SER A 211 SHEET 3 AA2 6 MET A 231 TRP A 235 1 O ILE A 233 N ALA A 163 SHEET 4 AA2 6 VAL A 125 ASN A 137 -1 N ALA A 135 O ILE A 232 SHEET 5 AA2 6 PHE A 249 ILE A 265 -1 O GLY A 259 N TYR A 130 SHEET 6 AA2 6 TYR A 329 SER A 330 1 O TYR A 329 N LEU A 258 SHEET 1 AA3 6 TYR B 61 THR B 65 0 SHEET 2 AA3 6 VAL B 32 SER B 36 1 N VAL B 32 O THR B 62 SHEET 3 AA3 6 ILE B 85 GLY B 89 1 O ILE B 85 N ALA B 35 SHEET 4 AA3 6 PHE B 249 ILE B 265 -1 O ALA B 264 N ILE B 86 SHEET 5 AA3 6 VAL B 125 ASN B 137 -1 N TYR B 130 O GLY B 259 SHEET 6 AA3 6 ALA B 298 PRO B 299 -1 O ALA B 298 N ASN B 129 SHEET 1 AA4 6 VAL B 210 TRP B 214 0 SHEET 2 AA4 6 ARG B 162 TRP B 165 1 N ARG B 162 O SER B 211 SHEET 3 AA4 6 MET B 231 TRP B 235 1 O ILE B 233 N ALA B 163 SHEET 4 AA4 6 VAL B 125 ASN B 137 -1 N LEU B 133 O THR B 234 SHEET 5 AA4 6 PHE B 249 ILE B 265 -1 O GLY B 259 N TYR B 130 SHEET 6 AA4 6 TYR B 329 SER B 330 1 O TYR B 329 N LEU B 258 LINK OXT SNW A 401 CA CA A 406 1555 1555 2.87 LINK CA CA A 406 O HOH A 519 1555 1555 2.85 SITE 1 AC1 17 SER A 37 TRP A 41 PHE A 66 GLN A 67 SITE 2 AC1 17 GLN A 87 ASP A 92 SER A 128 TYR A 130 SITE 3 AC1 17 TRP A 165 TRP A 235 ARG A 238 ASP A 261 SITE 4 AC1 17 THR A 297 CA A 406 HOH A 515 HOH A 519 SITE 5 AC1 17 HOH A 561 SITE 1 AC2 9 GLY A 241 ASN A 244 ASP A 245 SER A 294 SITE 2 AC2 9 PHE A 295 HOH A 522 HOH A 530 HOH A 550 SITE 3 AC2 9 HOH A 603 SITE 1 AC3 9 ASN A 137 LYS A 139 ILE A 224 LYS A 225 SITE 2 AC3 9 GLY A 227 ALA A 247 ASN A 248 PHE A 249 SITE 3 AC3 9 HOH A 501 SITE 1 AC4 4 ASP A 64 THR A 65 HOH A 557 GLU B 228 SITE 1 AC5 1 TYR A 305 SITE 1 AC6 6 TRP A 235 GLY A 237 ARG A 238 PHE A 295 SITE 2 AC6 6 SNW A 401 HOH A 519 SITE 1 AC7 2 GLY A 40 ARG A 238 SITE 1 AC8 16 SER B 37 TRP B 41 PHE B 66 GLN B 67 SITE 2 AC8 16 GLN B 87 ASP B 92 SER B 128 TYR B 130 SITE 3 AC8 16 TRP B 165 TRP B 235 ARG B 238 ASP B 261 SITE 4 AC8 16 THR B 297 HOH B 520 HOH B 546 HOH B 556 SITE 1 AC9 3 SER B 216 GLN B 219 PEG B 403 SITE 1 AD1 2 GLU B 215 PEG B 402 SITE 1 AD2 5 HIS B 271 ARG B 272 ASP B 273 ALA B 274 SITE 2 AD2 5 GLU B 313 SITE 1 AD3 4 LYS B 197 ILE B 200 TRP B 342 ALA B 346 SITE 1 AD4 4 GLY B 241 ASN B 244 ASP B 245 HOH B 527 SITE 1 AD5 2 GLY B 40 ARG B 238 CRYST1 71.390 71.390 134.060 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014008 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007459 0.00000