HEADER SIGNALING PROTEIN 10-JUN-16 5L9N TITLE STRUCTURE OF URIDYLYLATED GLNB FROM ESCHERICHIA COLI BOUND TO ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GLNB, B2553, JW2537; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS URIDYLYLATION, PII PROTEIN, NITROGEN METABOLISM, GLNK, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.RUBIO,C.PALANCA REVDAT 4 10-JAN-24 5L9N 1 LINK ATOM REVDAT 3 24-MAY-17 5L9N 1 JRNL REVDAT 2 10-MAY-17 5L9N 1 JRNL REVDAT 1 05-APR-17 5L9N 0 JRNL AUTH C.PALANCA,V.RUBIO JRNL TITL EFFECTS OF T-LOOP MODIFICATION ON THE PII-SIGNALLING JRNL TITL 2 PROTEIN: STRUCTURE OF URIDYLYLATED ESCHERICHIA COLI GLNB JRNL TITL 3 BOUND TO ATP. JRNL REF ENVIRON MICROBIOL REP V. 9 290 2017 JRNL REFN ESSN 1758-2229 JRNL PMID 28345298 JRNL DOI 10.1111/1758-2229.12533 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1030 - 2.7408 1.00 3054 135 0.1636 0.1994 REMARK 3 2 2.7408 - 2.1757 1.00 2928 156 0.2177 0.2468 REMARK 3 3 2.1757 - 1.9010 0.99 2911 158 0.2263 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 760 REMARK 3 ANGLE : 1.243 1038 REMARK 3 CHIRALITY : 0.040 130 REMARK 3 PLANARITY : 0.006 125 REMARK 3 DIHEDRAL : 16.254 289 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6253 17.1660 -9.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.2740 T22: 0.2542 REMARK 3 T33: 0.2299 T12: 0.0535 REMARK 3 T13: -0.0557 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2125 L22: 1.2318 REMARK 3 L33: 0.6318 L12: -0.3483 REMARK 3 L13: 0.2777 L23: -0.5212 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.1707 S13: -0.2463 REMARK 3 S21: 0.4248 S22: -0.0179 S23: -0.3590 REMARK 3 S31: 0.3155 S32: 0.2674 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2267 20.4032 -14.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.2768 REMARK 3 T33: 0.2425 T12: -0.0345 REMARK 3 T13: 0.0113 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0134 L22: 0.1169 REMARK 3 L33: 0.5414 L12: 0.0316 REMARK 3 L13: 0.1112 L23: -0.3415 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: 0.4588 S13: 0.5698 REMARK 3 S21: 0.0039 S22: -0.0084 S23: 0.3108 REMARK 3 S31: 0.3072 S32: -0.2053 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9890 18.4436 -14.3966 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2724 REMARK 3 T33: 0.2609 T12: 0.0106 REMARK 3 T13: 0.0121 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.1119 L22: 0.5119 REMARK 3 L33: 0.1512 L12: 0.2824 REMARK 3 L13: 0.1502 L23: 0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.1213 S13: -0.3212 REMARK 3 S21: 0.1566 S22: 0.0396 S23: -0.3292 REMARK 3 S31: 0.2107 S32: 0.0118 S33: 0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0072 9.5712 -11.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.4331 T22: 0.3604 REMARK 3 T33: 0.4660 T12: 0.1994 REMARK 3 T13: -0.0380 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 0.2296 L22: 0.2412 REMARK 3 L33: 0.3529 L12: -0.1009 REMARK 3 L13: -0.0507 L23: 0.2976 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: -0.1801 S13: -0.5814 REMARK 3 S21: 0.6595 S22: 0.1311 S23: -0.8496 REMARK 3 S31: 1.0995 S32: 0.6041 S33: 0.1318 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0658 9.3498 -14.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.4497 T22: 0.3298 REMARK 3 T33: 0.3239 T12: 0.0145 REMARK 3 T13: 0.0606 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.4698 L22: 0.4309 REMARK 3 L33: 0.4161 L12: 0.1792 REMARK 3 L13: 0.5284 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: 0.1377 S12: -0.3521 S13: 0.1193 REMARK 3 S21: 0.0300 S22: 0.0417 S23: -0.0730 REMARK 3 S31: 0.5340 S32: -0.0651 S33: 0.0018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1026 27.2197 -24.4746 REMARK 3 T TENSOR REMARK 3 T11: 0.3341 T22: 0.3977 REMARK 3 T33: 0.6037 T12: 0.0403 REMARK 3 T13: 0.0653 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.1014 L22: 0.0174 REMARK 3 L33: 0.2091 L12: 0.1085 REMARK 3 L13: -0.0257 L23: -0.0562 REMARK 3 S TENSOR REMARK 3 S11: -0.2920 S12: 0.1034 S13: 0.0660 REMARK 3 S21: -0.1826 S22: -0.0149 S23: -0.0920 REMARK 3 S31: -0.3511 S32: 0.3435 S33: -0.0022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1 M NAACETATE PH 4.6, 20 MM CACL2, REMARK 280 30% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 44.43400 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 44.43400 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 44.43400 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 44.43400 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 44.43400 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -44.43400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -44.43400 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 44.43400 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 -44.43400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 333 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 HIS A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 LEU A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 MET A 52 REMARK 465 VAL A 53 REMARK 465 ALA A 110 REMARK 465 ALA A 111 REMARK 465 ILE A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ASP A 109 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 170.94 58.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 11 O REMARK 620 2 PHE A 11 O 0.0 REMARK 620 3 ASP A 14 OD1 87.6 87.6 REMARK 620 4 ASP A 14 OD1 87.6 87.6 0.0 REMARK 620 5 ASP A 15 OD1 85.3 85.3 64.4 64.4 REMARK 620 6 ASP A 15 OD1 85.3 85.3 64.4 64.4 0.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 DBREF 5L9N A 1 112 UNP P0A9Z1 GLNB_ECOLI 1 112 SEQRES 1 A 112 MET LYS LYS ILE ASP ALA ILE ILE LYS PRO PHE LYS LEU SEQRES 2 A 112 ASP ASP VAL ARG GLU ALA LEU ALA GLU VAL GLY ILE THR SEQRES 3 A 112 GLY MET THR VAL THR GLU VAL LYS GLY PHE GLY ARG GLN SEQRES 4 A 112 LYS GLY HIS THR GLU LEU TYR ARG GLY ALA GLU TYR MET SEQRES 5 A 112 VAL ASP PHE LEU PRO LYS VAL LYS ILE GLU ILE VAL VAL SEQRES 6 A 112 PRO ASP ASP ILE VAL ASP THR CYS VAL ASP THR ILE ILE SEQRES 7 A 112 ARG THR ALA GLN THR GLY LYS ILE GLY ASP GLY LYS ILE SEQRES 8 A 112 PHE VAL PHE ASP VAL ALA ARG VAL ILE ARG ILE ARG THR SEQRES 9 A 112 GLY GLU GLU ASP ASP ALA ALA ILE HET ATP A 201 31 HET MG A 202 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *37(H2 O) HELIX 1 AA1 LYS A 9 PHE A 11 5 3 HELIX 2 AA2 LYS A 12 VAL A 23 1 12 HELIX 3 AA3 PRO A 66 ASP A 68 5 3 HELIX 4 AA4 ILE A 69 GLN A 82 1 14 SHEET 1 AA1 4 THR A 29 GLY A 35 0 SHEET 2 AA1 4 LEU A 56 VAL A 65 -1 O LYS A 60 N THR A 31 SHEET 3 AA1 4 LYS A 2 ILE A 8 -1 N ILE A 4 O ILE A 63 SHEET 4 AA1 4 ILE A 91 ASP A 95 -1 O PHE A 92 N ASP A 5 LINK O PHE A 11 MG MG A 202 1555 1555 2.20 LINK O PHE A 11 MG MG A 202 1555 15455 2.48 LINK OD1 ASP A 14 MG MG A 202 1555 1555 2.66 LINK OD1 ASP A 14 MG MG A 202 1555 15455 2.02 LINK OD1 ASP A 15 MG MG A 202 1555 1555 2.61 LINK OD1 ASP A 15 MG MG A 202 1555 15455 1.91 SITE 1 AC1 18 ILE A 7 GLY A 27 MET A 28 THR A 29 SITE 2 AC1 18 GLY A 35 LYS A 58 GLU A 62 ILE A 63 SITE 3 AC1 18 VAL A 64 LYS A 85 ILE A 86 GLY A 87 SITE 4 AC1 18 ASP A 88 GLY A 89 LYS A 90 ARG A 101 SITE 5 AC1 18 ILE A 102 ARG A 103 SITE 1 AC2 3 PHE A 11 ASP A 14 ASP A 15 CRYST1 88.868 88.868 88.868 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011253 0.00000