HEADER HYDROLASE 13-JUN-16 5LA0 TITLE THE MECHANISM BY WHICH ARABINOXYLANASES CAN RECOGNISE HIGHLY DECORATED TITLE 2 XYLANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING FAMILY 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINICLOSTRIDIUM THERMOCELLUM JW20; SOURCE 3 ORGANISM_TAXID: 492476; SOURCE 4 GENE: CTHER_1146; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINOXYLANASE GLYCOSIDE HYDROLASE CARBOHYDRATE BINDING MODULE KEYWDS 2 ARABINOSE CLOSTRIDIUM THERMOCELLUM CELLULOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,A.LABOUREL,F.CUSKIN,A.JACKSON,L.CROUCH,A.ROGOWSKI,A.GILBERT REVDAT 5 10-JAN-24 5LA0 1 HETSYN REVDAT 4 29-JUL-20 5LA0 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 30-AUG-17 5LA0 1 REMARK REVDAT 2 26-OCT-16 5LA0 1 JRNL REVDAT 1 31-AUG-16 5LA0 0 JRNL AUTH A.LABOUREL,L.I.CROUCH,J.L.BRAS,A.JACKSON,A.ROGOWSKI,J.GRAY, JRNL AUTH 2 M.P.YADAV,B.HENRISSAT,C.M.FONTES,H.J.GILBERT,S.NAJMUDIN, JRNL AUTH 3 A.BASLE,F.CUSKIN JRNL TITL THE MECHANISM BY WHICH ARABINOXYLANASES CAN RECOGNIZE HIGHLY JRNL TITL 2 DECORATED XYLANS. JRNL REF J.BIOL.CHEM. V. 291 22149 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27531750 JRNL DOI 10.1074/JBC.M116.743948 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 60345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3939 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3634 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5401 ; 1.564 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8215 ; 1.022 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;32.774 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;11.908 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4610 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 973 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 1.732 ; 1.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1933 ; 1.722 ; 1.654 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2422 ; 2.209 ; 2.489 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2423 ; 2.211 ; 2.490 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 2.511 ; 1.860 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2006 ; 2.511 ; 1.860 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2964 ; 2.983 ; 2.711 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5048 ; 5.144 ;16.055 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4759 ; 3.742 ;14.734 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7573 ; 2.002 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 189 ;42.071 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7842 ;11.037 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5LA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5AK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULPHATE, 0.1 M BIS- REMARK 280 TRIS, 1 % PEG 3350 PH 5.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.55650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.18300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.55650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.18300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 34 REMARK 465 ALA A 284 REMARK 465 TRP A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 GLY A 288 REMARK 465 MET A 289 REMARK 465 LEU A 517 REMARK 465 GLU A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 58 O HOH A 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 206 OH TYR A 327 4545 1.87 REMARK 500 O HOH A 768 O HOH A 794 2544 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 206 CD GLU A 206 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 69 7.38 -152.83 REMARK 500 GLU A 171 64.94 25.72 REMARK 500 PHE A 212 -50.33 75.74 REMARK 500 ASN A 247 39.09 -160.23 REMARK 500 PHE A 310 54.05 -92.97 REMARK 500 SER A 319 -124.74 -124.18 REMARK 500 PHE A 328 -75.89 -155.17 REMARK 500 ASN A 367 -120.26 45.98 REMARK 500 TYR A 402 -58.87 70.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 377 OE1 REMARK 620 2 GLU A 379 OE1 101.6 REMARK 620 3 GLU A 379 OE2 93.2 50.6 REMARK 620 4 TYR A 420 O 170.3 83.5 83.6 REMARK 620 5 ASN A 509 O 82.4 79.8 128.4 106.7 REMARK 620 6 ASN A 509 OD1 102.7 140.7 155.0 77.4 73.4 REMARK 620 7 HOH A 851 O 82.5 127.3 76.7 87.9 151.3 86.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD2 REMARK 620 2 ASP A 394 O 74.7 REMARK 620 3 VAL A 396 O 163.0 89.0 REMARK 620 4 GLY A 407 O 81.8 82.0 91.8 REMARK 620 5 ASP A 409 OD1 120.6 164.6 75.6 97.5 REMARK 620 6 ASP A 409 OD2 73.3 147.5 123.4 98.5 47.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 ASP A 392 OD2 48.1 REMARK 620 3 ASP A 409 OD2 90.6 71.4 REMARK 620 4 TRP A 424 O 158.5 153.2 96.8 REMARK 620 5 GLU A 429 OE1 84.8 115.2 164.4 82.7 REMARK 620 6 GLU A 429 OE2 75.3 71.4 139.9 110.1 52.8 REMARK 620 7 HOH A 776 O 75.3 113.4 78.3 86.4 86.1 130.8 REMARK 620 8 HOH A1005 O 120.6 74.3 82.5 80.5 112.7 73.7 155.2 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 5LA0 A 37 516 UNP A0A0J9WZQ7_CLOTM DBREF2 5LA0 A A0A0J9WZQ7 37 516 SEQADV 5LA0 MET A 34 UNP A0A0J9WZQ INITIATING METHIONINE SEQADV 5LA0 ALA A 35 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 SER A 36 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 LEU A 517 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 GLU A 518 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 519 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 520 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 521 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 522 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 523 UNP A0A0J9WZQ EXPRESSION TAG SEQADV 5LA0 HIS A 524 UNP A0A0J9WZQ EXPRESSION TAG SEQRES 1 A 491 MET ALA SER SER PRO GLN ARG GLY ARG PRO ARG LEU ASN SEQRES 2 A 491 ALA ALA ARG THR THR PHE VAL GLY ASP ASN GLY GLN PRO SEQRES 3 A 491 LEU ARG GLY PRO TYR THR SER THR GLU TRP THR ALA ALA SEQRES 4 A 491 ALA PRO TYR ASP GLN ILE ALA ARG VAL LYS GLU LEU GLY SEQRES 5 A 491 PHE ASN ALA VAL HIS LEU TYR ALA GLU CYS PHE ASP PRO SEQRES 6 A 491 ARG TYR PRO ALA PRO GLY SER LYS ALA PRO GLY TYR ALA SEQRES 7 A 491 VAL ASN GLU ILE ASP LYS ILE VAL GLU ARG THR ARG GLU SEQRES 8 A 491 LEU GLY LEU TYR LEU VAL ILE THR ILE GLY ASN GLY ALA SEQRES 9 A 491 ASN ASN GLY ASN HIS ASN ALA GLN TRP ALA ARG ASP PHE SEQRES 10 A 491 TRP LYS PHE TYR ALA PRO ARG TYR ALA LYS GLU THR HIS SEQRES 11 A 491 VAL LEU TYR GLU ILE HIS ASN GLU PRO VAL ALA TRP GLY SEQRES 12 A 491 PRO PRO TYR SER SER SER THR ALA ASN PRO PRO GLY ALA SEQRES 13 A 491 VAL ASP MET GLU ILE ASP VAL TYR ARG ILE ILE ARG THR SEQRES 14 A 491 TYR ALA PRO GLU THR PRO VAL LEU LEU PHE SER TYR ALA SEQRES 15 A 491 VAL PHE GLY GLY LYS GLY GLY ALA ALA GLU ALA LEU LYS SEQRES 16 A 491 ASP ILE ARG ALA PHE ASN LYS ALA VAL PHE GLY ASN GLU SEQRES 17 A 491 ASN ALA VAL TRP THR ASN GLU ALA VAL ALA PHE HIS GLY SEQRES 18 A 491 TYR ALA GLY TRP GLN GLU THR THR ILE ALA VAL GLU GLU SEQRES 19 A 491 LEU LEU LYS ALA GLY TYR PRO CYS PHE MET THR GLU TYR SEQRES 20 A 491 ALA GLY GLY ALA TRP GLY SER GLY MET GLY GLY LEU ASP SEQRES 21 A 491 VAL GLU LEU THR TYR GLU LEU GLU ARG LEU GLY VAL SER SEQRES 22 A 491 TRP LEU THR PHE GLN TYR ILE PRO PRO THR GLY VAL SER SEQRES 23 A 491 ASP ASP VAL THR LYS PRO GLU TYR PHE SER ALA LEU VAL SEQRES 24 A 491 GLU ASN SER GLY LEU SER TRP THR PRO ASP TYR GLY ASN SEQRES 25 A 491 TRP PRO ALA ALA ARG GLY VAL TYR GLY ASN GLY GLY LEU SEQRES 26 A 491 ALA ARG GLU THR ALA THR TRP ILE ASN ASN PHE LEU THR SEQRES 27 A 491 GLY THR THR ARG ILE GLU ALA GLU ASP PHE ASP TRP GLY SEQRES 28 A 491 GLY ASN GLY VAL SER TYR TYR ASP THR ASP SER VAL ASN SEQRES 29 A 491 VAL GLY GLY GLN TYR ARG PRO ASP GLU GLY VAL ASP ILE SEQRES 30 A 491 GLU LYS THR SER ASP THR GLY GLY GLY TYR ASN VAL GLY SEQRES 31 A 491 TRP ILE SER GLU GLY GLU TRP LEU GLU TYR THR ILE ARG SEQRES 32 A 491 VAL ARG ASN PRO GLY TYR TYR ASN LEU SER LEU ARG VAL SEQRES 33 A 491 ALA GLY ILE SER GLY SER ARG VAL GLN VAL SER PHE GLY SEQRES 34 A 491 ASN GLN ASP LYS THR GLY VAL TRP GLU LEU PRO ALA THR SEQRES 35 A 491 GLY GLY PHE GLN THR TRP THR THR ALA THR ARG GLN VAL SEQRES 36 A 491 PHE LEU GLY ALA GLY LEU GLN LYS LEU ARG ILE ASN ALA SEQRES 37 A 491 LEU SER GLY GLY PHE ASN LEU ASN TRP ILE GLU LEU SER SEQRES 38 A 491 PRO ILE LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 601 5 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET ARA A 605 10 HET ARA A 606 10 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM ARA ALPHA-L-ARABINOPYRANOSE HETSYN ARA ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE FORMUL 2 SO4 O4 S 2- FORMUL 3 CA 3(CA 2+) FORMUL 6 ARA 2(C5 H10 O5) FORMUL 8 HOH *579(H2 O) HELIX 1 AA1 PRO A 74 VAL A 81 1 8 HELIX 2 AA2 LYS A 82 GLY A 85 5 4 HELIX 3 AA3 ALA A 111 GLY A 126 1 16 HELIX 4 AA4 ASN A 135 ASN A 139 5 5 HELIX 5 AA5 ASN A 143 ALA A 159 1 17 HELIX 6 AA6 GLY A 188 ALA A 204 1 17 HELIX 7 AA7 GLY A 218 GLY A 239 1 22 HELIX 8 AA8 GLY A 257 GLY A 272 1 16 HELIX 9 AA9 ASP A 293 GLY A 304 1 12 HELIX 10 AB1 LYS A 324 TYR A 327 5 4 HELIX 11 AB2 PHE A 328 GLY A 336 1 9 HELIX 12 AB3 GLY A 354 LEU A 358 5 5 HELIX 13 AB4 GLU A 379 PHE A 381 5 3 SHEET 1 AA1 2 ARG A 44 LEU A 45 0 SHEET 2 AA1 2 PHE A 52 VAL A 53 -1 O VAL A 53 N ARG A 44 SHEET 1 AA210 ASP A 320 ASP A 321 0 SHEET 2 AA210 TRP A 307 TYR A 312 1 N TYR A 312 O ASP A 320 SHEET 3 AA210 CYS A 275 GLU A 279 1 N MET A 277 O LEU A 308 SHEET 4 AA210 GLU A 248 HIS A 253 1 N PHE A 252 O THR A 278 SHEET 5 AA210 VAL A 209 TYR A 214 1 N LEU A 211 O ALA A 249 SHEET 6 AA210 VAL A 164 GLU A 167 1 N TYR A 166 O LEU A 210 SHEET 7 AA210 TYR A 128 GLY A 134 1 N ILE A 131 O GLU A 167 SHEET 8 AA210 ALA A 88 CYS A 95 1 N LEU A 91 O VAL A 130 SHEET 9 AA210 ARG A 61 SER A 66 1 N PRO A 63 O HIS A 90 SHEET 10 AA210 TRP A 307 TYR A 312 1 O THR A 309 N GLY A 62 SHEET 1 AA3 5 ARG A 360 GLU A 361 0 SHEET 2 AA3 5 TRP A 430 VAL A 437 1 O ARG A 436 N ARG A 360 SHEET 3 AA3 5 GLY A 493 ALA A 501 -1 O LEU A 497 N TYR A 433 SHEET 4 AA3 5 SER A 455 PHE A 461 -1 N SER A 460 O ARG A 498 SHEET 5 AA3 5 GLN A 464 ASP A 465 -1 O GLN A 464 N PHE A 461 SHEET 1 AA4 5 TYR A 390 TYR A 391 0 SHEET 2 AA4 5 TRP A 430 VAL A 437 -1 O TRP A 430 N TYR A 391 SHEET 3 AA4 5 GLY A 493 ALA A 501 -1 O LEU A 497 N TYR A 433 SHEET 4 AA4 5 SER A 455 PHE A 461 -1 N SER A 460 O ARG A 498 SHEET 5 AA4 5 TRP A 470 LEU A 472 -1 O LEU A 472 N SER A 455 SHEET 1 AA5 2 TRP A 365 ILE A 366 0 SHEET 2 AA5 2 PHE A 369 LEU A 370 -1 O PHE A 369 N ILE A 366 SHEET 1 AA6 4 ARG A 375 GLU A 377 0 SHEET 2 AA6 4 ASN A 507 PRO A 515 -1 O ILE A 511 N ILE A 376 SHEET 3 AA6 4 GLY A 441 ALA A 450 -1 N SER A 446 O GLU A 512 SHEET 4 AA6 4 TRP A 481 LEU A 490 -1 O ALA A 484 N LEU A 447 SHEET 1 AA7 2 ILE A 410 LYS A 412 0 SHEET 2 AA7 2 TYR A 420 VAL A 422 -1 O ASN A 421 N GLU A 411 LINK OE1 GLU A 377 CA CA A 602 1555 1555 2.25 LINK OE1 GLU A 379 CA CA A 602 1555 1555 2.49 LINK OE2 GLU A 379 CA CA A 602 1555 1555 2.56 LINK OD2 ASP A 392 CA CA A 603 1555 1555 2.30 LINK OD1 ASP A 392 CA CA A 604 1555 1555 2.40 LINK OD2 ASP A 392 CA CA A 604 1555 1555 2.93 LINK O ASP A 394 CA CA A 603 1555 1555 2.67 LINK O VAL A 396 CA CA A 603 1555 1555 2.26 LINK O GLY A 407 CA CA A 603 1555 1555 2.39 LINK OD1 ASP A 409 CA CA A 603 1555 1555 2.51 LINK OD2 ASP A 409 CA CA A 603 1555 1555 2.86 LINK OD2 ASP A 409 CA CA A 604 1555 1555 2.35 LINK O TYR A 420 CA CA A 602 1555 1555 2.36 LINK O TRP A 424 CA CA A 604 1555 1555 2.41 LINK OE1 GLU A 429 CA CA A 604 1555 1555 2.52 LINK OE2 GLU A 429 CA CA A 604 1555 1555 2.50 LINK O ASN A 509 CA CA A 602 1555 1555 2.56 LINK OD1 ASN A 509 CA CA A 602 1555 1555 2.31 LINK CA CA A 602 O HOH A 851 1555 1555 2.38 LINK CA CA A 604 O HOH A 776 1555 1555 2.50 LINK CA CA A 604 O HOH A1005 1555 1555 2.41 CISPEP 1 TYR A 100 PRO A 101 0 8.38 CISPEP 2 ALA A 174 TRP A 175 0 3.42 CISPEP 3 PRO A 177 PRO A 178 0 3.13 CISPEP 4 ASN A 185 PRO A 186 0 0.46 CISPEP 5 PRO A 314 PRO A 315 0 19.73 CISPEP 6 TRP A 346 PRO A 347 0 -1.06 CRYST1 67.092 72.366 109.113 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009165 0.00000