HEADER OXIDOREDUCTASE 17-JUN-16 5LBY TITLE STRUCTURE OF THE HUMAN QUINONE REDUCTASE 2 (NQO2) IN COMPLEX WITH TITLE 2 CRENOLANIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2,NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2,QR2; COMPND 6 EC: 1.10.5.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QUINONE REDUCTASE 2, KINASE INHIBITOR, CRENOLANIB, KEYWDS 2 RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,G.MEDARD,B.KUESTER REVDAT 4 10-JAN-24 5LBY 1 REMARK REVDAT 3 13-DEC-17 5LBY 1 JRNL REVDAT 2 06-DEC-17 5LBY 1 JRNL REVDAT 1 29-NOV-17 5LBY 0 JRNL AUTH S.KLAEGER,S.HEINZLMEIR,M.WILHELM,H.POLZER,B.VICK,P.A.KOENIG, JRNL AUTH 2 M.REINECKE,B.RUPRECHT,S.PETZOLDT,C.MENG,J.ZECHA,K.REITER, JRNL AUTH 3 H.QIAO,D.HELM,H.KOCH,M.SCHOOF,G.CANEVARI,E.CASALE, JRNL AUTH 4 S.R.DEPAOLINI,A.FEUCHTINGER,Z.WU,T.SCHMIDT,L.RUECKERT, JRNL AUTH 5 W.BECKER,J.HUENGES,A.K.GARZ,B.O.GOHLKE,D.P.ZOLG,G.KAYSER, JRNL AUTH 6 T.VOODER,R.PREISSNER,H.HAHNE,N.TONISSON,K.KRAMER,K.GOTZE, JRNL AUTH 7 F.BASSERMANN,J.SCHLEGL,H.C.EHRLICH,S.AICHE,A.WALCH, JRNL AUTH 8 P.A.GREIF,S.SCHNEIDER,E.R.FELDER,J.RULAND,G.MEDARD, JRNL AUTH 9 I.JEREMIAS,K.SPIEKERMANN,B.KUSTER JRNL TITL THE TARGET LANDSCAPE OF CLINICAL KINASE DRUGS. JRNL REF SCIENCE V. 358 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29191878 JRNL DOI 10.1126/SCIENCE.AAN4368 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 91705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.106 REMARK 3 R VALUE (WORKING SET) : 0.105 REMARK 3 FREE R VALUE : 0.125 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1190 REMARK 3 BIN FREE R VALUE SET COUNT : 329 REMARK 3 BIN FREE R VALUE : 0.1680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4015 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3694 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5498 ; 1.872 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8529 ; 1.502 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.009 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;34.538 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;11.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.616 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4485 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 946 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1880 ; 1.864 ; 1.187 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1879 ; 1.845 ; 1.185 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2366 ; 2.082 ; 1.787 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2367 ; 2.081 ; 1.787 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2135 ; 4.170 ; 1.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2136 ; 4.171 ; 1.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3125 ; 4.594 ; 2.153 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5361 ; 4.420 ;16.236 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5124 ; 4.143 ;15.101 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7709 ; 9.952 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 108 ;29.015 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7907 ;13.894 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 229 B 2 229 15346 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5LBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 180 MM TRI-AMMONIUM CITRATE, 2.2 M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.79300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.28550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.70050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.28550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.79300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.70050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLN A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLN B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 458 O HOH B 560 2.12 REMARK 500 O HOH B 448 O HOH B 546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 VAL B 24 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 VAL B 24 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 163 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 165 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 107 -165.56 -161.72 REMARK 500 TYR A 132 -127.93 52.14 REMARK 500 TYR B 132 -124.66 54.01 REMARK 500 TYR B 155 52.44 -98.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 107.2 REMARK 620 3 CYS A 222 O 105.7 101.5 REMARK 620 4 CYS A 222 SG 125.6 115.5 97.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 106.2 REMARK 620 3 CYS B 222 O 102.8 100.1 REMARK 620 4 CYS B 222 SG 126.9 116.9 98.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T2 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T2 B 303 DBREF 5LBY A 0 230 UNP P16083 NQO2_HUMAN 1 231 DBREF 5LBY B 0 230 UNP P16083 NQO2_HUMAN 1 231 SEQADV 5LBY HIS A 231 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS A 232 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS A 233 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS A 234 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS A 235 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS A 236 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 231 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 232 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 233 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 234 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 235 UNP P16083 EXPRESSION TAG SEQADV 5LBY HIS B 236 UNP P16083 EXPRESSION TAG SEQRES 1 A 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 A 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 A 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 A 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 A 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 A 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 A 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 A 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 A 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 A 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 A 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 A 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 A 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 A 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 A 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 A 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 A 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 A 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 B 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 B 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 B 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 B 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 B 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 B 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 B 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 B 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 B 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 B 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 B 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 B 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 B 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 B 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 B 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 B 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 B 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS HET ZN A 301 1 HET FAD A 302 53 HET 6T2 A 303 33 HET FAD B 301 53 HET ZN B 302 1 HET 6T2 B 303 33 HETNAM ZN ZINC ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 6T2 1-(2-{5-[(3-METHYLOXETAN-3-YL)METHOXY]-1H-BENZIMIDAZOL- HETNAM 2 6T2 1-YL}QUINOLIN-8-YL)PIPERIDIN-4-AMINE HETSYN 6T2 CRENOLANIB FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 6T2 2(C26 H29 N5 O2) FORMUL 9 HOH *436(H2 O) HELIX 1 AA1 SER A 16 GLY A 33 1 18 HELIX 2 AA2 THR A 51 ILE A 55 5 5 HELIX 3 AA3 ASN A 66 ARG A 78 1 13 HELIX 4 AA4 ALA A 81 ALA A 94 1 14 HELIX 5 AA5 PRO A 109 LEU A 120 1 12 HELIX 6 AA6 PHE A 131 GLY A 135 5 5 HELIX 7 AA7 ALA A 152 THR A 156 5 5 HELIX 8 AA8 ASP A 163 HIS A 173 1 11 HELIX 9 AA9 LEU A 176 GLY A 180 5 5 HELIX 10 AB1 PRO A 192 ALA A 195 5 4 HELIX 11 AB2 SER A 196 THR A 213 1 18 HELIX 12 AB3 ILE A 214 GLU A 217 5 4 HELIX 13 AB4 THR A 223 GLY A 229 1 7 HELIX 14 AB5 SER B 16 GLY B 33 1 18 HELIX 15 AB6 THR B 51 ILE B 55 5 5 HELIX 16 AB7 ASN B 66 GLN B 77 1 12 HELIX 17 AB8 ALA B 81 ALA B 94 1 14 HELIX 18 AB9 PRO B 109 LEU B 120 1 12 HELIX 19 AC1 PHE B 131 GLY B 135 5 5 HELIX 20 AC2 ASP B 163 HIS B 173 1 11 HELIX 21 AC3 LEU B 176 GLY B 180 5 5 HELIX 22 AC4 PRO B 192 ALA B 195 5 4 HELIX 23 AC5 SER B 196 THR B 213 1 18 HELIX 24 AC6 ILE B 214 GLU B 217 5 4 HELIX 25 AC7 THR B 223 GLY B 229 1 7 SHEET 1 AA1 5 THR A 35 ASP A 40 0 SHEET 2 AA1 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA1 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA1 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 AA1 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 AA2 5 THR A 35 ASP A 40 0 SHEET 2 AA2 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA2 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA2 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 AA2 5 GLN A 187 PHE A 190 1 O SER A 189 N VAL A 146 SHEET 1 AA3 5 THR B 35 ASP B 40 0 SHEET 2 AA3 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA3 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA3 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 AA3 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 AA4 5 THR B 35 ASP B 40 0 SHEET 2 AA4 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA4 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA4 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 AA4 5 GLN B 187 PHE B 190 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 301 1555 1555 2.11 LINK ND1 HIS A 177 ZN ZN A 301 1555 1555 2.06 LINK O CYS A 222 ZN ZN A 301 1555 1555 2.08 LINK SG CYS A 222 ZN ZN A 301 1555 1555 2.27 LINK ND1 HIS B 173 ZN ZN B 302 1555 1555 2.09 LINK ND1 HIS B 177 ZN ZN B 302 1555 1555 2.10 LINK O CYS B 222 ZN ZN B 302 1555 1555 2.04 LINK SG CYS B 222 ZN ZN B 302 1555 1555 2.26 CISPEP 1 ILE A 128 PRO A 129 0 -2.15 CISPEP 2 ILE B 128 PRO B 129 0 -4.42 SITE 1 AC1 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC2 28 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC2 28 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC2 28 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC2 28 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC2 28 GLU A 193 ARG A 200 LYS A 201 6T2 A 303 SITE 6 AC2 28 HOH A 433 HOH A 440 HOH A 476 HOH A 477 SITE 7 AC2 28 HOH A 496 HOH A 532 HOH A 576 ASP B 117 SITE 1 AC3 14 TRP A 105 PHE A 106 GLY A 149 GLY A 150 SITE 2 AC3 14 MET A 154 ASN A 161 ILE A 194 FAD A 302 SITE 3 AC3 14 HOH A 407 HOH A 475 HOH A 539 GLN B 122 SITE 4 AC3 14 PHE B 126 PHE B 178 SITE 1 AC4 30 ASP A 117 HOH A 546 HIS B 11 LYS B 15 SITE 2 AC4 30 SER B 16 PHE B 17 ASN B 18 SER B 20 SITE 3 AC4 30 PRO B 102 LEU B 103 TYR B 104 TRP B 105 SITE 4 AC4 30 PHE B 106 THR B 147 THR B 148 GLY B 149 SITE 5 AC4 30 GLY B 150 TYR B 155 GLU B 193 GLU B 197 SITE 6 AC4 30 ARG B 200 6T2 B 303 HOH B 404 HOH B 429 SITE 7 AC4 30 HOH B 432 HOH B 434 HOH B 445 HOH B 475 SITE 8 AC4 30 HOH B 509 HOH B 540 SITE 1 AC5 3 HIS B 173 HIS B 177 CYS B 222 SITE 1 AC6 13 PHE A 126 PHE A 178 GLN A 209 HOH A 546 SITE 2 AC6 13 TRP B 105 GLY B 149 GLY B 150 MET B 154 SITE 3 AC6 13 ASN B 161 ILE B 194 FAD B 301 HOH B 465 SITE 4 AC6 13 HOH B 500 CRYST1 61.586 79.401 106.571 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009383 0.00000