HEADER OXIDOREDUCTASE 20-JUN-16 5LC8 TITLE CRYSTAL STRUCTURE OF SPECIFIC MUTANT FROM PSEUDOMONAS AERUGINOSA TITLE 2 LIPOXYGENASE AT 1.8A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 15-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LINOLEATE 13-LIPOXYGENASE; COMPND 5 EC: 1.13.11.12, 1.13.11.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: HMPREF1223_10352; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON ENZYME, PROTEIN-PHOSPHOLIPID COMPLEX, OXIDOREDUCTASE, KEYWDS 2 A420G MUTANT, EICOSANOIDS, INFECTIOUS DISEASES, ARACHIDONATE 15S- KEYWDS 3 LIPOXYGENASE, LINOLEATE 13S-LIPOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KALMS,S.BANTHIYA,E.GALEMOU YOGA,H.KUHN,P.SCHEERER REVDAT 4 10-JAN-24 5LC8 1 LINK REVDAT 3 06-SEP-17 5LC8 1 LINK REVDAT 2 22-FEB-17 5LC8 1 JRNL REVDAT 1 25-JAN-17 5LC8 0 JRNL AUTH J.KALMS,S.BANTHIYA,E.GALEMOU YOGA,M.HAMBERG,H.G.HOLZHUTTER, JRNL AUTH 2 H.KUHN,P.SCHEERER JRNL TITL THE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LIPOXYGENASE JRNL TITL 2 ALA420GLY MUTANT EXPLAINS THE IMPROVED OXYGEN AFFINITY AND JRNL TITL 3 THE ALTERED REACTION SPECIFICITY. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1862 463 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28093240 JRNL DOI 10.1016/J.BBALIP.2017.01.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5285 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5102 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7201 ; 1.178 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11697 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 5.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;31.369 ;22.864 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;12.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2785 25.8809 -21.9132 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0104 REMARK 3 T33: 0.1114 T12: 0.0002 REMARK 3 T13: 0.0017 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0531 L22: 0.0362 REMARK 3 L33: 0.0277 L12: 0.0104 REMARK 3 L13: -0.0215 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0049 S13: 0.0003 REMARK 3 S21: 0.0021 S22: -0.0023 S23: -0.0062 REMARK 3 S31: -0.0011 S32: -0.0008 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 702 A 702 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3207 13.5039 -19.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0120 REMARK 3 T33: 0.1239 T12: 0.0020 REMARK 3 T13: -0.0208 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.9300 L22: 0.0675 REMARK 3 L33: 2.8594 L12: -0.1557 REMARK 3 L13: -0.5264 L23: -0.3674 REMARK 3 S TENSOR REMARK 3 S11: -0.1155 S12: -0.1735 S13: 0.1383 REMARK 3 S21: 0.0308 S22: 0.0088 S23: -0.0394 REMARK 3 S31: -0.0824 S32: 0.0223 S33: 0.1067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IR4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG 3350, 0.2 M MGCL2, 0.1 M TRIS REMARK 280 PH 7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.79950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.79950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.16600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.70800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.16600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.70800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.79950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.16600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.70800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.79950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.16600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.70800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 ASP A 21 REMARK 465 VAL A 200 REMARK 465 THR A 201 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 465 ASP A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ASN A 198 CG OD1 ND2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 GLU A 542 CG CD OE1 OE2 REMARK 470 ARG A 637 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 381 -80.27 -116.29 REMARK 500 SER A 552 -82.91 -106.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1143 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 NE2 REMARK 620 2 HIS A 382 NE2 92.2 REMARK 620 3 HIS A 555 NE2 101.8 94.2 REMARK 620 4 ASN A 559 OD1 84.4 173.1 92.5 REMARK 620 5 ILE A 685 O 171.6 89.3 86.4 93.2 REMARK 620 6 HOH A 810 O 87.2 89.4 170.2 84.4 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 825 O REMARK 620 2 HOH A 831 O 171.8 REMARK 620 3 HOH A1072 O 96.2 91.6 REMARK 620 4 HOH A1093 O 86.6 85.7 177.2 REMARK 620 5 HOH A1124 O 92.6 90.3 86.7 92.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPE A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 706 DBREF 5LC8 A 19 685 PDB 5LC8 5LC8 19 685 SEQRES 1 A 667 ALA ASN ASP SER ILE PHE PHE SER PRO LEU LYS TYR LEU SEQRES 2 A 667 GLY ALA GLU GLN GLN ARG SER ILE ASP ALA SER ARG SER SEQRES 3 A 667 LEU LEU ASP ASN LEU ILE PRO PRO SER LEU PRO GLN TYR SEQRES 4 A 667 ASP ASN LEU ALA GLY LYS LEU ALA ARG ARG ALA VAL LEU SEQRES 5 A 667 THR SER LYS LYS LEU VAL TYR VAL TRP THR GLU ASN PHE SEQRES 6 A 667 ALA ASN VAL LYS GLY VAL PRO MET ALA ARG SER VAL PRO SEQRES 7 A 667 LEU GLY GLU LEU PRO ASN VAL ASP TRP LEU LEU LYS THR SEQRES 8 A 667 ALA GLY VAL ILE VAL GLU LEU ILE VAL ASN PHE VAL ALA SEQRES 9 A 667 SER LEU PRO ALA SER ALA ALA ALA GLN PHE GLU ARG ILE SEQRES 10 A 667 ALA ALA GLY LEU SER GLY ASP LEU GLU ALA ALA ARG GLN SEQRES 11 A 667 VAL HIS GLU ALA LEU LEU GLU GLU ALA LYS ASN ASP PRO SEQRES 12 A 667 ALA ALA ALA GLY SER LEU LEU LEU ARG PHE THR GLU LEU SEQRES 13 A 667 GLN THR ARG VAL ILE ALA LEU LEU THR ARG VAL GLY LEU SEQRES 14 A 667 LEU VAL ASP ASP ILE LEU LYS SER ALA SER ASN LEU VAL SEQRES 15 A 667 THR GLN GLY GLY GLN GLY ASP GLY LEU ASN ARG PHE ARG SEQRES 16 A 667 ALA VAL PHE GLY THR LEU ARG LEU PRO GLU VAL ALA ASP SEQRES 17 A 667 SER PHE ARG ASP ASP GLU ALA PHE ALA TYR TRP ARG VAL SEQRES 18 A 667 ALA GLY PRO ASN PRO LEU LEU ILE ARG ARG VAL ASP ALA SEQRES 19 A 667 LEU PRO ALA ASN PHE PRO LEU GLY GLU GLU GLN PHE ARG SEQRES 20 A 667 ARG VAL MET GLY ALA ASP ASP SER LEU LEU GLU ALA ALA SEQRES 21 A 667 ALA SER ARG ARG LEU TYR LEU LEU ASP TYR ALA GLU LEU SEQRES 22 A 667 GLY LYS LEU ALA PRO SER GLY ALA VAL ASP LYS LEU LEU SEQRES 23 A 667 THR GLY THR GLY PHE ALA TYR ALA PRO ILE ALA LEU PHE SEQRES 24 A 667 ALA LEU GLY LYS ASP ARG ALA GLY LEU LEU PRO VAL ALA SEQRES 25 A 667 ILE GLN CYS GLY GLN ASP PRO ALA THR HIS PRO MET PHE SEQRES 26 A 667 VAL ARG PRO ALA GLU SER GLU SER ASP LEU TYR TRP GLY SEQRES 27 A 667 TRP GLN MET ALA LYS THR VAL VAL GLN VAL ALA GLU GLU SEQRES 28 A 667 ASN TYR HIS GLU MET PHE VAL HIS LEU ALA GLN THR HIS SEQRES 29 A 667 LEU VAL SER GLU ALA PHE CYS LEU ALA THR GLN ARG THR SEQRES 30 A 667 LEU ALA PRO SER HIS PRO LEU HIS VAL LEU LEU ALA PRO SEQRES 31 A 667 HIS PHE GLU GLY THR LEU PHE ILE ASN GLU GLY GLY ALA SEQRES 32 A 667 ARG ILE LEU LEU PRO SER ALA GLY PHE ILE ASP VAL MET SEQRES 33 A 667 PHE ALA ALA PRO ILE GLN ASP THR GLN ALA THR ALA GLY SEQRES 34 A 667 GLY ASN ARG LEU GLY PHE ASP PHE TYR ARG GLY MET LEU SEQRES 35 A 667 PRO GLU SER LEU LYS ALA ARG ASN VAL ASP ASP PRO ALA SEQRES 36 A 667 ALA LEU PRO ASP TYR PRO TYR ARG ASP ASP GLY LEU LEU SEQRES 37 A 667 VAL TRP ASN ALA ILE ARG GLN TRP ALA ALA ASP TYR VAL SEQRES 38 A 667 ALA VAL TYR TYR ALA SER ASP GLY ASP VAL THR ALA ASP SEQRES 39 A 667 VAL GLU LEU ALA ALA TRP VAL GLY GLU VAL ILE GLY SER SEQRES 40 A 667 GLY LYS VAL ALA GLY PHE ARG PRO ILE THR GLY ARG SER SEQRES 41 A 667 GLN LEU VAL GLU VAL LEU THR MET VAL ILE PHE THR ALA SEQRES 42 A 667 SER ALA GLN HIS ALA ALA VAL ASN PHE PRO GLN PRO SER SEQRES 43 A 667 MET MET THR TYR ALA PRO ALA ILE CYS ALA MET SER ALA SEQRES 44 A 667 ALA PRO ALA PRO ASP SER PRO SER GLY LYS SER GLU ALA SEQRES 45 A 667 ASP TRP LEU LYS MET MET PRO PRO THR LEU VAL ALA LEU SEQRES 46 A 667 GLU LYS VAL ASN ILE TYR HIS LEU LEU GLY SER VAL TYR SEQRES 47 A 667 HIS GLY ARG LEU GLY ASP TYR ARG GLN THR GLY PHE PRO SEQRES 48 A 667 TYR ALA PRO VAL PHE SER ASP ARG ARG VAL THR ALA SER SEQRES 49 A 667 GLY GLY PRO LEU GLU ARG PHE GLN ALA ARG LEU LYS GLU SEQRES 50 A 667 VAL GLU ALA THR ILE ARG THR ARG ASN GLN ALA ARG ARG SEQRES 51 A 667 LYS PRO TYR GLU TYR LEU LEU PRO SER ARG ILE PRO ALA SEQRES 52 A 667 SER THR ASN ILE HET FE2 A 701 1 HET GOL A 702 12 HET ZPE A 703 47 HET PEG A 704 7 HET PEG A 705 7 HET MG A 706 1 HETNAM FE2 FE (II) ION HETNAM GOL GLYCEROL HETNAM ZPE (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2- HETNAM 2 ZPE (TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 ZPE C37 H70 N O8 P FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 MG MG 2+ FORMUL 8 HOH *343(H2 O) HELIX 1 AA1 SER A 22 PHE A 24 5 3 HELIX 2 AA2 PHE A 25 TYR A 30 1 6 HELIX 3 AA3 GLY A 32 ASN A 48 1 17 HELIX 4 AA4 LEU A 54 ASP A 58 5 5 HELIX 5 AA5 ASN A 59 TYR A 77 1 19 HELIX 6 AA6 PRO A 96 LEU A 100 5 5 HELIX 7 AA7 ASN A 102 LEU A 124 1 23 HELIX 8 AA8 PRO A 125 ALA A 130 1 6 HELIX 9 AA9 PHE A 132 ASP A 160 1 29 HELIX 10 AB1 ALA A 163 SER A 195 1 33 HELIX 11 AB2 LEU A 209 VAL A 215 1 7 HELIX 12 AB3 GLU A 223 PHE A 228 1 6 HELIX 13 AB4 ASP A 230 GLY A 241 1 12 HELIX 14 AB5 GLY A 260 GLY A 269 1 10 HELIX 15 AB6 SER A 273 SER A 280 1 8 HELIX 16 AB7 ALA A 289 ALA A 295 5 7 HELIX 17 AB8 GLU A 350 PHE A 375 1 26 HELIX 18 AB9 THR A 381 LEU A 396 1 16 HELIX 19 AC1 HIS A 400 ALA A 407 1 8 HELIX 20 AC2 PRO A 408 GLU A 411 5 4 HELIX 21 AC3 GLY A 412 LEU A 424 1 13 HELIX 22 AC4 GLY A 429 PHE A 435 1 7 HELIX 23 AC5 PRO A 438 PHE A 453 1 16 HELIX 24 AC6 MET A 459 ARG A 467 1 9 HELIX 25 AC7 TYR A 478 TYR A 503 1 26 HELIX 26 AC8 SER A 505 ALA A 511 1 7 HELIX 27 AC9 ASP A 512 SER A 525 1 14 HELIX 28 AD1 GLY A 536 SER A 552 1 17 HELIX 29 AD2 SER A 552 PHE A 560 1 9 HELIX 30 AD3 PRO A 561 MET A 566 1 6 HELIX 31 AD4 SER A 588 LYS A 594 1 7 HELIX 32 AD5 PRO A 598 GLY A 613 1 16 HELIX 33 AD6 ASP A 636 ALA A 641 1 6 HELIX 34 AD7 GLY A 644 ARG A 667 1 24 HELIX 35 AD8 LEU A 675 ILE A 679 5 5 SHEET 1 AA1 2 TRP A 79 THR A 80 0 SHEET 2 AA1 2 MET A 91 ALA A 92 -1 O MET A 91 N THR A 80 SHEET 1 AA2 5 ARG A 248 ARG A 249 0 SHEET 2 AA2 5 LEU A 283 ASP A 287 -1 O LEU A 285 N ARG A 248 SHEET 3 AA2 5 ILE A 314 LEU A 319 -1 O PHE A 317 N TYR A 284 SHEET 4 AA2 5 LEU A 326 GLN A 332 -1 O VAL A 329 N LEU A 316 SHEET 5 AA2 5 MET A 342 VAL A 344 -1 O PHE A 343 N ILE A 331 SHEET 1 AA3 2 VAL A 300 LYS A 302 0 SHEET 2 AA3 2 GLY A 306 GLY A 308 -1 O GLY A 308 N VAL A 300 LINK NE2 HIS A 377 FE FE2 A 701 1555 1555 2.31 LINK NE2 HIS A 382 FE FE2 A 701 1555 1555 2.29 LINK NE2 HIS A 555 FE FE2 A 701 1555 1555 2.20 LINK OD1 ASN A 559 FE FE2 A 701 1555 1555 2.36 LINK O ILE A 685 FE FE2 A 701 1555 1555 2.23 LINK FE FE2 A 701 O HOH A 810 1555 1555 2.25 LINK MG MG A 706 O HOH A 825 1555 5445 2.10 LINK MG MG A 706 O HOH A 831 1555 1555 2.12 LINK MG MG A 706 O HOH A1072 1555 1555 1.98 LINK MG MG A 706 O HOH A1093 1555 1555 2.24 LINK MG MG A 706 O HOH A1124 1555 5445 2.13 CISPEP 1 PHE A 628 PRO A 629 0 8.64 SITE 1 AC1 6 HIS A 377 HIS A 382 HIS A 555 ASN A 559 SITE 2 AC1 6 ILE A 685 HOH A 810 SITE 1 AC2 10 GLN A 56 TYR A 57 ASP A 58 ASN A 59 SITE 2 AC2 10 ASP A 432 PRO A 438 ILE A 439 GLN A 440 SITE 3 AC2 10 HOH A 844 HOH A 856 SITE 1 AC3 15 SER A 22 ILE A 23 TRP A 105 LEU A 182 SITE 2 AC3 15 VAL A 185 ASP A 190 GLU A 373 HIS A 377 SITE 3 AC3 15 HIS A 382 PHE A 415 ILE A 416 GLY A 420 SITE 4 AC3 15 LEU A 424 ILE A 685 HOH A 900 SITE 1 AC4 1 LYS A 654 SITE 1 AC5 3 LYS A 302 LEU A 303 GLY A 306 SITE 1 AC6 6 HIS A 340 HOH A 825 HOH A 831 HOH A1072 SITE 2 AC6 6 HOH A1093 HOH A1124 CRYST1 84.332 97.416 155.599 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006427 0.00000