HEADER HYDROLASE 20-JUN-16 5LCA TITLE VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH 3-OXO-2-(3- TITLE 2 (TRIFLUOROMETHYL)PHENYL)ISOINDOLINE-4-CARBOXYLIC ACID (COMPOUND 17) CAVEAT 5LCA ILE A 39 HAS WRONG CHIRALITY AT ATOM CB COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-LACTAMASE,BETA-LACTAMASE VIM-2,CLASS B CARBAPENEMASE COMPND 5 VIM-2,METALLO BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO- COMPND 6 BETA-LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,VIM-2 METALLO-BETA- COMPND 7 LACTAMASE,VIM-2 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: OPINF KEYWDS METALLO-BETA-LACTAMASE, INHIBITOR, COMPLEX, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 10-JAN-24 5LCA 1 REMARK REVDAT 2 24-MAY-17 5LCA 1 JRNL REVDAT 1 15-FEB-17 5LCA 0 JRNL AUTH G.B.LI,M.I.ABBOUD,J.BREM,H.SOMEYA,C.T.LOHANS,S.Y.YANG, JRNL AUTH 2 J.SPENCER,D.W.WAREHAM,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL NMR-FILTERED VIRTUAL SCREENING LEADS TO NON-METAL CHELATING JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITORS. JRNL REF CHEM SCI V. 8 928 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 28451231 JRNL DOI 10.1039/C6SC04524C REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 14407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9917 - 4.1515 0.99 1402 157 0.1612 0.2062 REMARK 3 2 4.1515 - 3.2979 0.99 1344 149 0.1244 0.1573 REMARK 3 3 3.2979 - 2.8818 0.99 1315 146 0.1253 0.1573 REMARK 3 4 2.8818 - 2.6187 0.99 1297 141 0.1291 0.1671 REMARK 3 5 2.6187 - 2.4312 0.99 1307 140 0.1256 0.1856 REMARK 3 6 2.4312 - 2.2880 0.98 1271 148 0.1235 0.1548 REMARK 3 7 2.2880 - 2.1735 0.97 1266 141 0.1214 0.1509 REMARK 3 8 2.1735 - 2.0789 0.97 1253 143 0.1161 0.1594 REMARK 3 9 2.0789 - 1.9989 0.98 1268 136 0.1128 0.1638 REMARK 3 10 1.9989 - 1.9300 0.97 1246 137 0.1192 0.1572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1751 REMARK 3 ANGLE : 0.647 2381 REMARK 3 CHIRALITY : 0.049 267 REMARK 3 PLANARITY : 0.004 308 REMARK 3 DIHEDRAL : 14.762 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0201 18.5302 -2.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1452 REMARK 3 T33: 0.0353 T12: -0.0083 REMARK 3 T13: 0.0106 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.5400 L22: 5.7636 REMARK 3 L33: 3.6119 L12: 0.9406 REMARK 3 L13: -0.5286 L23: -0.8035 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.3068 S13: 0.0344 REMARK 3 S21: 0.6868 S22: -0.0016 S23: 0.0382 REMARK 3 S31: -0.2506 S32: -0.0753 S33: -0.0927 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9042 18.2775 -9.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0538 REMARK 3 T33: 0.0405 T12: -0.0147 REMARK 3 T13: 0.0026 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.4471 L22: 3.7788 REMARK 3 L33: 1.8514 L12: -0.5436 REMARK 3 L13: -0.3641 L23: 0.1605 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: 0.0282 S13: 0.1096 REMARK 3 S21: -0.0458 S22: -0.0374 S23: -0.0293 REMARK 3 S31: -0.1225 S32: 0.0152 S33: -0.0108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4870 17.9217 -8.6523 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0848 REMARK 3 T33: 0.0909 T12: -0.0145 REMARK 3 T13: 0.0057 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.7100 L22: 1.4563 REMARK 3 L33: 3.0403 L12: -0.3280 REMARK 3 L13: 0.4203 L23: -1.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0586 S13: 0.0022 REMARK 3 S21: 0.0602 S22: -0.0012 S23: -0.0273 REMARK 3 S31: 0.0038 S32: 0.0356 S33: -0.0097 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9190 18.2362 -19.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.0958 REMARK 3 T33: 0.1005 T12: -0.0043 REMARK 3 T13: 0.0235 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.2785 L22: 4.5437 REMARK 3 L33: 2.9533 L12: 0.4345 REMARK 3 L13: 0.0692 L23: -0.2980 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.1112 S13: 0.0107 REMARK 3 S21: -0.0534 S22: -0.1575 S23: -0.2030 REMARK 3 S31: -0.0600 S32: 0.1151 S33: 0.0702 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7176 9.7714 -20.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0903 REMARK 3 T33: 0.0855 T12: -0.0055 REMARK 3 T13: 0.0067 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.0364 L22: 1.3684 REMARK 3 L33: 0.8300 L12: 0.5735 REMARK 3 L13: -0.2319 L23: -0.4296 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.1800 S13: -0.2509 REMARK 3 S21: -0.0319 S22: 0.0180 S23: -0.0145 REMARK 3 S31: 0.1259 S32: -0.0342 S33: -0.0110 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3780 23.0058 -21.7430 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.1436 REMARK 3 T33: 0.1579 T12: -0.0114 REMARK 3 T13: -0.0233 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.9777 L22: 0.7667 REMARK 3 L33: 3.7288 L12: -0.2491 REMARK 3 L13: -1.3183 L23: -0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.2841 S13: 0.4666 REMARK 3 S21: -0.0511 S22: -0.0940 S23: 0.0208 REMARK 3 S31: -0.2964 S32: -0.1146 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9170 10.3561 -27.5574 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.2419 REMARK 3 T33: 0.1391 T12: -0.0002 REMARK 3 T13: -0.0263 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 2.0303 L22: 3.2909 REMARK 3 L33: 7.8246 L12: 0.9561 REMARK 3 L13: -0.6767 L23: -4.6705 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.5072 S13: -0.1901 REMARK 3 S21: -0.5153 S22: 0.0885 S23: 0.3700 REMARK 3 S31: 0.5165 S32: -0.4147 S33: -0.1269 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4946 11.1105 -12.7048 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.1056 REMARK 3 T33: 0.0857 T12: -0.0050 REMARK 3 T13: 0.0118 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.5556 L22: 4.8514 REMARK 3 L33: 4.9286 L12: 0.4565 REMARK 3 L13: 0.3900 L23: 1.9590 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0139 S13: -0.2498 REMARK 3 S21: 0.3862 S22: -0.0033 S23: 0.2820 REMARK 3 S31: 0.3194 S32: -0.1730 S33: 0.0390 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2610 16.6408 -22.6871 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.1394 REMARK 3 T33: 0.1081 T12: -0.0036 REMARK 3 T13: -0.0024 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.5035 L22: 7.3846 REMARK 3 L33: 3.4048 L12: -0.9930 REMARK 3 L13: 0.6427 L23: -4.8522 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.3029 S13: -0.0122 REMARK 3 S21: -0.2833 S22: 0.0525 S23: 0.1511 REMARK 3 S31: 0.1002 S32: -0.2581 S33: -0.1402 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14437 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.09300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 4C1D REMARK 200 REMARK 200 REMARK: RHOMBOHEDRA PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M MAGNESIUM FORMATE, 22.0% (V/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 5 MM 3-OXO-2-(3-(TRIFLUOROMETHYL) REMARK 280 PHENYL)ISOINDOLINE-4-CARBOXYLIC ACID, 16 MG/ML PROTEIN, PH 7.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.24350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.35800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.65650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.35800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.24350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.65650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 TYR A 33 REMARK 465 PRO A 34 REMARK 465 THR A 35 REMARK 465 VAL A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 ASN A 261 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 39 CD1 REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS A 101 NZ REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 THR A 260 C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 675 O HOH A 714 4455 2.15 REMARK 500 O HOH A 710 O HOH A 730 1455 2.19 REMARK 500 O HOH A 731 O HOH A 745 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.86 73.06 REMARK 500 TRP A 87 66.37 69.52 REMARK 500 ILE A 103 -51.51 -121.44 REMARK 500 ALA A 178 -107.70 -155.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 96.7 REMARK 620 3 HIS A 179 NE2 105.4 105.8 REMARK 620 4 HOH A 684 O 119.9 115.5 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 113.8 REMARK 620 3 HIS A 240 NE2 94.6 106.8 REMARK 620 4 HOH A 684 O 96.0 120.0 121.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B06 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 DBREF 5LCA A 1 266 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU HET ZN A 501 1 HET ZN A 502 1 HET B06 A 503 23 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HETNAM ZN ZINC ION HETNAM B06 3-OXIDANYLIDENE-2-[3-(TRIFLUOROMETHYL)PHENYL]-1~{H}- HETNAM 2 B06 ISOINDOLE-4-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 B06 C16 H10 F3 N O3 FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *149(H2 O) HELIX 1 AA1 GLY A 88 ILE A 103 1 16 HELIX 2 AA2 HIS A 116 GLY A 121 1 6 HELIX 3 AA3 GLY A 122 ALA A 129 1 8 HELIX 4 AA4 SER A 136 GLY A 147 1 12 HELIX 5 AA5 CYS A 198 ILE A 200 5 3 HELIX 6 AA6 GLU A 218 TYR A 230 1 13 HELIX 7 AA7 LEU A 246 THR A 260 1 15 SHEET 1 AA1 7 VAL A 44 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O TYR A 134 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 TYR A 187 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 501 1555 1555 2.11 LINK ND1 HIS A 116 ZN ZN A 501 1555 1555 2.00 LINK OD2 ASP A 118 ZN ZN A 502 1555 1555 2.01 LINK NE2 HIS A 179 ZN ZN A 501 1555 1555 2.07 LINK SG CYS A 198 ZN ZN A 502 1555 1555 2.28 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.09 LINK ZN ZN A 501 O HOH A 684 1555 1555 1.92 LINK ZN ZN A 502 O HOH A 684 1555 1555 2.03 SITE 1 AC1 5 HIS A 114 HIS A 116 HIS A 179 ZN A 502 SITE 2 AC1 5 HOH A 684 SITE 1 AC2 5 ASP A 118 CYS A 198 HIS A 240 ZN A 501 SITE 2 AC2 5 HOH A 684 SITE 1 AC3 14 PHE A 62 TRP A 87 HIS A 116 ASP A 118 SITE 2 AC3 14 HIS A 179 TYR A 201 GLY A 209 ASN A 210 SITE 3 AC3 14 ASP A 213 HIS A 240 HOH A 621 HOH A 629 SITE 4 AC3 14 HOH A 633 HOH A 709 SITE 1 AC4 5 PHE A 115 SER A 180 THR A 181 ASP A 213 SITE 2 AC4 5 HOH A 727 SITE 1 AC5 4 ARG A 45 ILE A 57 PRO A 68 GLY A 104 SITE 1 AC6 8 GLN A 48 TRP A 54 GLN A 102 ALA A 128 SITE 2 AC6 8 ALA A 129 HOH A 601 HOH A 622 HOH A 639 SITE 1 AC7 5 ASP A 117 ALA A 164 GLU A 171 HOH A 619 SITE 2 AC7 5 HOH A 712 SITE 1 AC8 6 TYR A 47 LEU A 96 GLU A 100 VAL A 107 SITE 2 AC8 6 HOH A 681 HOH A 701 CRYST1 40.487 65.313 70.716 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014141 0.00000