HEADER DNA BINDING PROTEIN 22-JUN-16 5LCL TITLE STRUCTURE OF THE RAD14 DNA-BINDING DOMAIN IN COMPLEX WITH C8- TITLE 2 AMINOFLUORENE- GUANINE CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD14; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA REPAIR PROTEIN RAD14; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GCTCTAC(8AF)TCATCA; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (5'-D(*GP*TP*GP*AP*TP*GP*AP*CP*GP*TP*AP*GP*AP*G)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: RAD14, YMR201C, YM8325.02C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PIBA35; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 GENE: RAD14, YMR201C, YM8325.02C; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PIBA35; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SACCHAROMYCES; SOURCE 22 ORGANISM_TAXID: 4930; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: SACCHAROMYCES; SOURCE 26 ORGANISM_TAXID: 4930 KEYWDS NUCLEOTIDE EXCISION REPAIR DNA DAMAGE RECOGNITION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,T.CARELL,C.EBERT,N.SIMON REVDAT 4 10-JAN-24 5LCL 1 REMARK REVDAT 3 26-JUL-17 5LCL 1 REVDAT 2 07-JUN-17 5LCL 1 JRNL REVDAT 1 10-MAY-17 5LCL 0 JRNL AUTH C.EBERT,N.SIMON,S.SCHNEIDER,T.CARELL JRNL TITL STRUCTURAL INSIGHTS INTO THE RECOGNITION OF N(2) -ARYL- AND JRNL TITL 2 C8-ARYL DNA LESIONS BY THE REPAIR PROTEIN XPA/RAD14. JRNL REF CHEMBIOCHEM V. 18 1379 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28444956 JRNL DOI 10.1002/CBIC.201700169 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1861 REMARK 3 NUCLEIC ACID ATOMS : 579 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3226 ; 0.015 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 2412 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4597 ; 2.029 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5627 ; 1.615 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 5.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.951 ;24.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;16.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.329 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2861 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 732 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 910 ; 1.105 ; 2.296 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 1.086 ; 2.293 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1135 ; 1.812 ; 3.428 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1136 ; 1.815 ; 3.433 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2316 ; 0.838 ; 2.096 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2315 ; 0.838 ; 2.096 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3461 ; 1.368 ; 3.112 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3860 ; 3.474 ;21.553 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3852 ; 3.461 ;21.492 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 188 A 299 4 REMARK 3 1 B 188 B 299 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1779 ; 0.35 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1779 ; 1.29 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8316 50.9892 -66.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.0805 REMARK 3 T33: 0.0868 T12: 0.0265 REMARK 3 T13: 0.0075 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.0937 L22: 3.5846 REMARK 3 L33: 11.2403 L12: 1.7752 REMARK 3 L13: -3.2635 L23: -4.3634 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.2150 S13: -0.1926 REMARK 3 S21: -0.2184 S22: 0.1741 S23: -0.0574 REMARK 3 S31: 0.3407 S32: 0.1170 S33: -0.1287 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 47.7326 54.7232 -63.4515 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.0469 REMARK 3 T33: 0.0348 T12: 0.0114 REMARK 3 T13: 0.0180 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 5.9092 L22: 8.3541 REMARK 3 L33: 4.8189 L12: 1.9390 REMARK 3 L13: -0.2842 L23: -6.0906 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: -0.0117 S13: -0.0049 REMARK 3 S21: 0.2949 S22: -0.1112 S23: 0.0767 REMARK 3 S31: -0.1048 S32: 0.1052 S33: -0.0932 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5890 56.6331 -51.8493 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.0678 REMARK 3 T33: 0.0339 T12: 0.0059 REMARK 3 T13: -0.0109 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 4.7474 L22: 2.2491 REMARK 3 L33: 3.5839 L12: 0.3417 REMARK 3 L13: -2.6218 L23: 0.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.1518 S13: 0.0853 REMARK 3 S21: 0.0239 S22: -0.1424 S23: 0.0996 REMARK 3 S31: -0.0513 S32: -0.4266 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8185 54.8795 -48.2784 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0161 REMARK 3 T33: 0.0338 T12: 0.0104 REMARK 3 T13: 0.0185 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 3.8040 L22: 2.9687 REMARK 3 L33: 6.3756 L12: 0.7460 REMARK 3 L13: 3.1780 L23: 1.5471 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0549 S13: 0.1653 REMARK 3 S21: 0.0494 S22: -0.0577 S23: 0.0208 REMARK 3 S31: 0.1295 S32: -0.0736 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6671 61.2618 -53.8942 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.3652 REMARK 3 T33: 0.3445 T12: 0.0345 REMARK 3 T13: 0.0325 T23: 0.1155 REMARK 3 L TENSOR REMARK 3 L11: 3.4461 L22: 10.7760 REMARK 3 L33: 8.7599 L12: -1.3753 REMARK 3 L13: 1.6556 L23: 5.5618 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: 0.2811 S13: 0.4317 REMARK 3 S21: 0.0494 S22: -0.1384 S23: 0.8055 REMARK 3 S31: -0.8026 S32: -0.5657 S33: 0.2468 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2555 71.0174 -44.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.3992 T22: 0.2535 REMARK 3 T33: 0.2427 T12: 0.0039 REMARK 3 T13: -0.0046 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 13.1140 L22: 0.5778 REMARK 3 L33: 0.0378 L12: 2.7043 REMARK 3 L13: -0.6276 L23: -0.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.4084 S13: 0.0768 REMARK 3 S21: -0.0529 S22: -0.0569 S23: -0.0195 REMARK 3 S31: -0.0507 S32: 0.0326 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 188 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8124 30.0156 -0.6139 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0298 REMARK 3 T33: 0.0784 T12: 0.0150 REMARK 3 T13: -0.0200 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 5.2777 L22: 2.9987 REMARK 3 L33: 9.6517 L12: 1.4332 REMARK 3 L13: -3.2431 L23: -3.1620 REMARK 3 S TENSOR REMARK 3 S11: 0.2089 S12: -0.2204 S13: -0.2057 REMARK 3 S21: 0.2679 S22: 0.0015 S23: -0.1031 REMARK 3 S31: 0.0605 S32: 0.3054 S33: -0.2104 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 209 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0442 31.9950 -3.1998 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0439 REMARK 3 T33: 0.0466 T12: 0.0230 REMARK 3 T13: 0.0165 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 9.5982 L22: 5.0602 REMARK 3 L33: 6.3314 L12: 3.0872 REMARK 3 L13: -5.2078 L23: -1.3289 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.2620 S13: -0.0848 REMARK 3 S21: -0.1629 S22: 0.2036 S23: 0.0337 REMARK 3 S31: 0.2180 S32: -0.0159 S33: -0.1938 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 219 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3151 44.3142 -14.6622 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0273 REMARK 3 T33: 0.0474 T12: 0.0181 REMARK 3 T13: -0.0008 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.1220 L22: 4.3353 REMARK 3 L33: 2.6302 L12: -0.1931 REMARK 3 L13: -0.2180 L23: -2.1935 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.0352 S13: 0.1034 REMARK 3 S21: 0.1454 S22: 0.0992 S23: 0.1715 REMARK 3 S31: -0.4076 S32: -0.0908 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 278 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9237 38.9688 -18.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0177 REMARK 3 T33: 0.0294 T12: 0.0101 REMARK 3 T13: 0.0216 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.9856 L22: 4.2114 REMARK 3 L33: 5.9886 L12: 1.4601 REMARK 3 L13: 1.9555 L23: 3.7720 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: -0.0105 S13: -0.0051 REMARK 3 S21: 0.0114 S22: 0.0734 S23: 0.2007 REMARK 3 S31: -0.2586 S32: 0.0296 S33: 0.0386 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 279 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5502 57.7576 -12.6492 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.1845 REMARK 3 T33: 0.3157 T12: 0.0198 REMARK 3 T13: 0.0789 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 11.9712 L22: 7.5024 REMARK 3 L33: 7.3371 L12: -3.5125 REMARK 3 L13: 2.7079 L23: -0.3719 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.4319 S13: 0.3852 REMARK 3 S21: 0.3751 S22: -0.1498 S23: 0.4320 REMARK 3 S31: -0.2959 S32: -0.4648 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 296 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1297 62.6987 -24.0687 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.4469 REMARK 3 T33: 0.3968 T12: -0.0228 REMARK 3 T13: -0.0452 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.7403 L22: 5.4491 REMARK 3 L33: 10.4454 L12: -4.4347 REMARK 3 L13: -6.2412 L23: 7.3314 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: -0.1502 S13: -0.0102 REMARK 3 S21: -0.1815 S22: -0.0669 S23: 0.1790 REMARK 3 S31: -0.2414 S32: 0.3325 S33: -0.0600 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8473 59.0737 -34.2233 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.1198 REMARK 3 T33: 0.3333 T12: 0.0706 REMARK 3 T13: 0.0764 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 4.0506 L22: 4.4481 REMARK 3 L33: 1.2669 L12: -3.5146 REMARK 3 L13: 0.5737 L23: 0.7862 REMARK 3 S TENSOR REMARK 3 S11: -0.4632 S12: -0.3595 S13: -0.5052 REMARK 3 S21: 0.3758 S22: 0.0540 S23: 1.0439 REMARK 3 S31: 0.0134 S32: -0.2051 S33: 0.4092 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5885 44.9629 -34.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.2403 REMARK 3 T33: 0.3835 T12: 0.0025 REMARK 3 T13: -0.0477 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 10.4244 L22: 1.1299 REMARK 3 L33: 5.7531 L12: -2.1488 REMARK 3 L13: 5.9612 L23: -2.4823 REMARK 3 S TENSOR REMARK 3 S11: 0.3389 S12: 0.5293 S13: 0.1817 REMARK 3 S21: -0.2227 S22: 0.0699 S23: 0.3024 REMARK 3 S31: 0.4655 S32: -0.1219 S33: -0.4088 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7507 49.0431 -32.5298 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.2084 REMARK 3 T33: 0.2840 T12: 0.0121 REMARK 3 T13: -0.1112 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 2.3237 L22: 9.1458 REMARK 3 L33: 1.4848 L12: -4.2725 REMARK 3 L13: 1.0453 L23: -0.7891 REMARK 3 S TENSOR REMARK 3 S11: 0.3769 S12: 0.2188 S13: 0.3022 REMARK 3 S21: -0.8964 S22: -0.3992 S23: -0.5739 REMARK 3 S31: 0.1191 S32: 0.1768 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8614 64.2170 -31.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.1780 REMARK 3 T33: 0.2680 T12: 0.0522 REMARK 3 T13: -0.0550 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 2.3488 L22: 8.5071 REMARK 3 L33: 4.6587 L12: 0.2711 REMARK 3 L13: -3.2920 L23: 0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.4076 S13: 0.3392 REMARK 3 S21: 0.4851 S22: 0.3604 S23: -0.0442 REMARK 3 S31: -0.1293 S32: 0.5881 S33: -0.4412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0151 REMARK 200 STARTING MODEL: 5G32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.22M AMMONIUM NITRATE 38% 2-METHYL REMARK 280 -1,3,-PROPANEDIOL, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.48250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.74125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.22375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 301 REMARK 465 ARG A 302 REMARK 465 GLU A 303 REMARK 465 LYS A 304 REMARK 465 LYS A 305 REMARK 465 TYR A 306 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 ASN B 12 REMARK 465 ARG B 13 REMARK 465 LYS B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 GLU B 18 REMARK 465 ARG B 19 REMARK 465 LEU B 20 REMARK 465 ARG B 21 REMARK 465 LYS B 22 REMARK 465 ARG B 23 REMARK 465 GLY B 24 REMARK 465 ILE B 25 REMARK 465 LEU B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 ASP B 29 REMARK 465 GLN B 30 REMARK 465 LEU B 31 REMARK 465 ASN B 32 REMARK 465 ARG B 33 REMARK 465 ILE B 34 REMARK 465 GLU B 35 REMARK 465 SER B 36 REMARK 465 ARG B 37 REMARK 465 ASN B 38 REMARK 465 GLU B 39 REMARK 465 PRO B 40 REMARK 465 LEU B 41 REMARK 465 LYS B 42 REMARK 465 THR B 43 REMARK 465 ARG B 44 REMARK 465 PRO B 45 REMARK 465 LEU B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 ASN B 53 REMARK 465 ARG B 54 REMARK 465 ASP B 55 REMARK 465 ASP B 56 REMARK 465 ASN B 57 REMARK 465 ALA B 58 REMARK 465 ALA B 59 REMARK 465 ALA B 60 REMARK 465 ALA B 61 REMARK 465 VAL B 62 REMARK 465 HIS B 63 REMARK 465 VAL B 64 REMARK 465 PRO B 65 REMARK 465 ASN B 66 REMARK 465 HIS B 67 REMARK 465 ASN B 68 REMARK 465 GLY B 69 REMARK 465 GLN B 70 REMARK 465 PRO B 71 REMARK 465 SER B 72 REMARK 465 ALA B 73 REMARK 465 LEU B 74 REMARK 465 ALA B 75 REMARK 465 ASN B 76 REMARK 465 THR B 77 REMARK 465 ASN B 78 REMARK 465 THR B 79 REMARK 465 ASN B 80 REMARK 465 THR B 81 REMARK 465 THR B 82 REMARK 465 SER B 83 REMARK 465 LEU B 84 REMARK 465 TYR B 85 REMARK 465 GLY B 86 REMARK 465 SER B 87 REMARK 465 GLY B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 ASP B 91 REMARK 465 GLY B 92 REMARK 465 SER B 93 REMARK 465 LYS B 94 REMARK 465 ARG B 95 REMARK 465 ASP B 96 REMARK 465 ALA B 97 REMARK 465 SER B 98 REMARK 465 VAL B 99 REMARK 465 LEU B 100 REMARK 465 ASP B 101 REMARK 465 LYS B 102 REMARK 465 ARG B 103 REMARK 465 PRO B 104 REMARK 465 THR B 105 REMARK 465 ASP B 106 REMARK 465 ARG B 107 REMARK 465 ILE B 108 REMARK 465 ARG B 109 REMARK 465 PRO B 110 REMARK 465 SER B 111 REMARK 465 ILE B 112 REMARK 465 ARG B 113 REMARK 465 LYS B 114 REMARK 465 GLN B 115 REMARK 465 ASP B 116 REMARK 465 TYR B 117 REMARK 465 ILE B 118 REMARK 465 GLU B 119 REMARK 465 TYR B 120 REMARK 465 ASP B 121 REMARK 465 PHE B 122 REMARK 465 ALA B 123 REMARK 465 THR B 124 REMARK 465 MET B 125 REMARK 465 GLN B 126 REMARK 465 ASN B 127 REMARK 465 LEU B 128 REMARK 465 ASN B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 TYR B 132 REMARK 465 ILE B 133 REMARK 465 ASN B 134 REMARK 465 PRO B 135 REMARK 465 LYS B 136 REMARK 465 ASP B 137 REMARK 465 LYS B 138 REMARK 465 LEU B 139 REMARK 465 PRO B 140 REMARK 465 ASN B 141 REMARK 465 SER B 142 REMARK 465 ASP B 143 REMARK 465 PHE B 144 REMARK 465 THR B 145 REMARK 465 ASP B 146 REMARK 465 ASP B 147 REMARK 465 GLN B 148 REMARK 465 GLU B 149 REMARK 465 PHE B 150 REMARK 465 GLU B 151 REMARK 465 SER B 152 REMARK 465 GLU B 153 REMARK 465 PHE B 154 REMARK 465 GLY B 155 REMARK 465 SER B 156 REMARK 465 LYS B 157 REMARK 465 LYS B 158 REMARK 465 GLN B 159 REMARK 465 LYS B 160 REMARK 465 THR B 161 REMARK 465 LEU B 162 REMARK 465 GLN B 163 REMARK 465 ASP B 164 REMARK 465 TRP B 165 REMARK 465 LYS B 166 REMARK 465 LYS B 167 REMARK 465 GLU B 168 REMARK 465 GLN B 169 REMARK 465 LEU B 170 REMARK 465 GLU B 171 REMARK 465 ARG B 172 REMARK 465 LYS B 173 REMARK 465 MET B 174 REMARK 465 LEU B 175 REMARK 465 TYR B 176 REMARK 465 GLU B 177 REMARK 465 ASN B 178 REMARK 465 ALA B 179 REMARK 465 PRO B 180 REMARK 465 PRO B 181 REMARK 465 PRO B 182 REMARK 465 GLU B 183 REMARK 465 HIS B 184 REMARK 465 ILE B 185 REMARK 465 SER B 186 REMARK 465 LYS B 187 REMARK 465 ARG B 302 REMARK 465 GLU B 303 REMARK 465 LYS B 304 REMARK 465 LYS B 305 REMARK 465 TYR B 306 REMARK 465 GLU B 307 REMARK 465 LYS B 308 REMARK 465 LYS B 309 REMARK 465 ILE B 310 REMARK 465 LYS B 311 REMARK 465 GLU B 312 REMARK 465 MET B 313 REMARK 465 ARG B 314 REMARK 465 LEU B 315 REMARK 465 LYS B 316 REMARK 465 THR B 317 REMARK 465 ARG B 318 REMARK 465 ALA B 319 REMARK 465 GLN B 320 REMARK 465 GLU B 321 REMARK 465 TYR B 322 REMARK 465 THR B 323 REMARK 465 ASN B 324 REMARK 465 ARG B 325 REMARK 465 LEU B 326 REMARK 465 ARG B 327 REMARK 465 GLU B 328 REMARK 465 LYS B 329 REMARK 465 LYS B 330 REMARK 465 HIS B 331 REMARK 465 GLY B 332 REMARK 465 LYS B 333 REMARK 465 ALA B 334 REMARK 465 HIS B 335 REMARK 465 ILE B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 PHE B 339 REMARK 465 SER B 340 REMARK 465 ASP B 341 REMARK 465 PRO B 342 REMARK 465 VAL B 343 REMARK 465 ASP B 344 REMARK 465 GLY B 345 REMARK 465 GLY B 346 REMARK 465 ILE B 347 REMARK 465 ASP B 348 REMARK 465 GLU B 349 REMARK 465 ASP B 350 REMARK 465 GLY B 351 REMARK 465 TYR B 352 REMARK 465 GLN B 353 REMARK 465 ILE B 354 REMARK 465 GLN B 355 REMARK 465 ARG B 356 REMARK 465 ARG B 357 REMARK 465 ARG B 358 REMARK 465 CYS B 359 REMARK 465 THR B 360 REMARK 465 ASP B 361 REMARK 465 CYS B 362 REMARK 465 GLY B 363 REMARK 465 LEU B 364 REMARK 465 GLU B 365 REMARK 465 THR B 366 REMARK 465 GLU B 367 REMARK 465 GLU B 368 REMARK 465 ILE B 369 REMARK 465 ASP B 370 REMARK 465 ILE B 371 REMARK 465 DC C 15 REMARK 465 DC D 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLN B 292 CG CD OE1 NE2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 DC D 8 C2 O2 N3 C4 N4 C5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 291 CB TRP B 291 CG 0.121 REMARK 500 DT C 9 O3' DT C 9 C3' 0.099 REMARK 500 DT C 9 O3' DC C 10 P 0.139 REMARK 500 DC D 8 O3' DG D 9 P 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 264 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT C 9 C5' - C4' - C3' ANGL. DEV. = 12.0 DEGREES REMARK 500 DT C 9 C1' - O4' - C4' ANGL. DEV. = 4.5 DEGREES REMARK 500 DT C 9 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DG D 9 C5' - C4' - O4' ANGL. DEV. = 7.7 DEGREES REMARK 500 DG D 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 196 -58.09 -127.51 REMARK 500 SER A 259 127.30 -179.60 REMARK 500 ILE B 196 -54.45 -122.66 REMARK 500 SER B 259 134.82 -179.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 CYS A 194 SG 110.4 REMARK 620 3 CYS A 213 SG 114.3 116.6 REMARK 620 4 CYS A 216 SG 112.4 105.5 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 CYS B 194 SG 107.2 REMARK 620 3 CYS B 213 SG 113.6 115.5 REMARK 620 4 CYS B 216 SG 112.5 106.8 101.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 DBREF 5LCL A 188 306 UNP P28519 RAD14_YEAST 188 306 DBREF 5LCL B 1 371 UNP P28519 RAD14_YEAST 1 371 DBREF 5LCL C 1 15 PDB 5LCL 5LCL 1 15 DBREF 5LCL D 1 15 PDB 5LCL 5LCL 1 15 SEQRES 1 A 119 ALA PRO LYS CYS ILE GLU CYS HIS ILE ASN ILE GLU MET SEQRES 2 A 119 ASP PRO VAL LEU HIS ASP VAL PHE LYS LEU GLN VAL CYS SEQRES 3 A 119 LYS GLN CYS SER LYS GLU HIS PRO GLU LYS TYR ALA LEU SEQRES 4 A 119 LEU THR LYS THR GLU CYS LYS GLU ASP TYR PHE LEU THR SEQRES 5 A 119 ASP PRO GLU LEU ASN ASP GLU ASP LEU PHE HIS ARG LEU SEQRES 6 A 119 GLU LYS PRO ASN PRO HIS SER GLY THR PHE ALA ARG MET SEQRES 7 A 119 GLN LEU PHE VAL ARG CYS GLU VAL GLU ALA PHE ALA PHE SEQRES 8 A 119 LYS LYS TRP GLY GLY GLU GLU GLY LEU ASP GLU GLU TRP SEQRES 9 A 119 GLN ARG ARG GLU GLU GLY LYS ALA HIS ARG ARG GLU LYS SEQRES 10 A 119 LYS TYR SEQRES 1 B 371 MET THR PRO GLU GLN LYS ALA LYS LEU GLU ALA ASN ARG SEQRES 2 B 371 LYS LEU ALA ILE GLU ARG LEU ARG LYS ARG GLY ILE LEU SEQRES 3 B 371 SER SER ASP GLN LEU ASN ARG ILE GLU SER ARG ASN GLU SEQRES 4 B 371 PRO LEU LYS THR ARG PRO LEU ALA VAL THR SER GLY SER SEQRES 5 B 371 ASN ARG ASP ASP ASN ALA ALA ALA ALA VAL HIS VAL PRO SEQRES 6 B 371 ASN HIS ASN GLY GLN PRO SER ALA LEU ALA ASN THR ASN SEQRES 7 B 371 THR ASN THR THR SER LEU TYR GLY SER GLY VAL VAL ASP SEQRES 8 B 371 GLY SER LYS ARG ASP ALA SER VAL LEU ASP LYS ARG PRO SEQRES 9 B 371 THR ASP ARG ILE ARG PRO SER ILE ARG LYS GLN ASP TYR SEQRES 10 B 371 ILE GLU TYR ASP PHE ALA THR MET GLN ASN LEU ASN GLY SEQRES 11 B 371 GLY TYR ILE ASN PRO LYS ASP LYS LEU PRO ASN SER ASP SEQRES 12 B 371 PHE THR ASP ASP GLN GLU PHE GLU SER GLU PHE GLY SER SEQRES 13 B 371 LYS LYS GLN LYS THR LEU GLN ASP TRP LYS LYS GLU GLN SEQRES 14 B 371 LEU GLU ARG LYS MET LEU TYR GLU ASN ALA PRO PRO PRO SEQRES 15 B 371 GLU HIS ILE SER LYS ALA PRO LYS CYS ILE GLU CYS HIS SEQRES 16 B 371 ILE ASN ILE GLU MET ASP PRO VAL LEU HIS ASP VAL PHE SEQRES 17 B 371 LYS LEU GLN VAL CYS LYS GLN CYS SER LYS GLU HIS PRO SEQRES 18 B 371 GLU LYS TYR ALA LEU LEU THR LYS THR GLU CYS LYS GLU SEQRES 19 B 371 ASP TYR PHE LEU THR ASP PRO GLU LEU ASN ASP GLU ASP SEQRES 20 B 371 LEU PHE HIS ARG LEU GLU LYS PRO ASN PRO HIS SER GLY SEQRES 21 B 371 THR PHE ALA ARG MET GLN LEU PHE VAL ARG CYS GLU VAL SEQRES 22 B 371 GLU ALA PHE ALA PHE LYS LYS TRP GLY GLY GLU GLU GLY SEQRES 23 B 371 LEU ASP GLU GLU TRP GLN ARG ARG GLU GLU GLY LYS ALA SEQRES 24 B 371 HIS ARG ARG GLU LYS LYS TYR GLU LYS LYS ILE LYS GLU SEQRES 25 B 371 MET ARG LEU LYS THR ARG ALA GLN GLU TYR THR ASN ARG SEQRES 26 B 371 LEU ARG GLU LYS LYS HIS GLY LYS ALA HIS ILE HIS HIS SEQRES 27 B 371 PHE SER ASP PRO VAL ASP GLY GLY ILE ASP GLU ASP GLY SEQRES 28 B 371 TYR GLN ILE GLN ARG ARG ARG CYS THR ASP CYS GLY LEU SEQRES 29 B 371 GLU THR GLU GLU ILE ASP ILE SEQRES 1 C 15 DG DC DT DC DT DA DC 8AF DT DC DA DT DC SEQRES 2 C 15 DA DC SEQRES 1 D 15 DG DT DG DA DT DG DA DC DG DT DA DG DA SEQRES 2 D 15 DG DC HET 8AF C 8 72 HET ZN A 401 1 HET ZN B 401 1 HETNAM 8AF [(2~{R},3~{S},5~{R})-5-[2-AZANYL-8-(9~{H}-FLUOREN-3- HETNAM 2 8AF YLAMINO)-6-OXIDANYLIDENE-3~{H}-PURIN-9-YL]-3-OXIDANYL- HETNAM 3 8AF OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHITE HETNAM ZN ZINC ION FORMUL 3 8AF C23 H23 N6 O6 P FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *49(H2 O) HELIX 1 AA1 ASP A 201 VAL A 207 1 7 HELIX 2 AA2 CYS A 213 HIS A 220 1 8 HELIX 3 AA3 HIS A 220 ALA A 225 1 6 HELIX 4 AA4 LYS A 229 PHE A 237 1 9 HELIX 5 AA5 THR A 239 ASN A 244 1 6 HELIX 6 AA6 ARG A 270 GLY A 282 1 13 HELIX 7 AA7 GLY A 282 HIS A 300 1 19 HELIX 8 AA8 ASP B 201 VAL B 207 1 7 HELIX 9 AA9 CYS B 213 HIS B 220 1 8 HELIX 10 AB1 HIS B 220 ALA B 225 1 6 HELIX 11 AB2 LYS B 229 PHE B 237 1 9 HELIX 12 AB3 THR B 239 ASN B 244 1 6 HELIX 13 AB4 ARG B 270 GLY B 282 1 13 HELIX 14 AB5 GLY B 282 HIS B 300 1 19 SHEET 1 AA1 3 LEU A 226 THR A 228 0 SHEET 2 AA1 3 MET A 265 VAL A 269 -1 O PHE A 268 N LEU A 227 SHEET 3 AA1 3 LEU A 252 LYS A 254 -1 N LEU A 252 O LEU A 267 SHEET 1 AA2 3 LEU B 226 THR B 228 0 SHEET 2 AA2 3 MET B 265 VAL B 269 -1 O PHE B 268 N LEU B 227 SHEET 3 AA2 3 LEU B 252 LYS B 254 -1 N LEU B 252 O LEU B 267 LINK O3'A DC C 7 P A8AF C 8 1555 1555 1.58 LINK O3'B DC C 7 P B8AF C 8 1555 1555 1.57 LINK O3'A8AF C 8 P A DT C 9 1555 1555 1.54 LINK O3'B8AF C 8 P B DT C 9 1555 1555 1.61 LINK SG CYS A 191 ZN ZN A 401 1555 1555 2.41 LINK SG CYS A 194 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 213 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 216 ZN ZN A 401 1555 1555 2.31 LINK SG CYS B 191 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.37 LINK SG CYS B 213 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 216 ZN ZN B 401 1555 1555 2.26 SITE 1 AC1 4 CYS A 191 CYS A 194 CYS A 213 CYS A 216 SITE 1 AC2 4 CYS B 191 CYS B 194 CYS B 213 CYS B 216 CRYST1 53.205 53.205 130.965 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007636 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.000007 -0.999991 0.004170 79.83881 1 MTRIX2 2 -1.000000 0.000009 0.000486 79.81107 1 MTRIX3 2 -0.000486 -0.004170 -0.999991 -66.62171 1