HEADER HYDROLASE 24-JUN-16 5LD9 TITLE STRUCTURE OF DEUBIQUITINATING ENZYME HOMOLOG, PYROCOCCUS FURIOSUS TITLE 2 JAMM1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAMM1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 GENE: PF1070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS JAMM/MPN+, METALLOPROTEASE, ISOPEPTIDASE, DEUBIQUITINATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.MAUPIN-FURLOW,B.FRANZETTI,S.CAO,E.GIRARD,F.GABEL,S.ENGILBERGE REVDAT 4 30-MAR-22 5LD9 1 LINK REVDAT 3 30-AUG-17 5LD9 1 REMARK REVDAT 2 14-JUN-17 5LD9 1 JRNL REVDAT 1 17-MAY-17 5LD9 0 JRNL AUTH S.CAO,S.ENGILBERGE,E.GIRARD,F.GABEL,B.FRANZETTI, JRNL AUTH 2 J.A.MAUPIN-FURLOW JRNL TITL STRUCTURAL INSIGHT INTO UBIQUITIN-LIKE PROTEIN RECOGNITION JRNL TITL 2 AND OLIGOMERIC STATES OF JAMM/MPN(+) PROTEASES. JRNL REF STRUCTURE V. 25 823 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28479062 JRNL DOI 10.1016/J.STR.2017.04.002 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 27118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3907 - 3.7302 0.94 2591 137 0.1537 0.1710 REMARK 3 2 3.7302 - 2.9623 0.96 2663 140 0.1492 0.2039 REMARK 3 3 2.9623 - 2.5882 0.95 2607 138 0.1647 0.1737 REMARK 3 4 2.5882 - 2.3518 0.95 2625 138 0.1541 0.1871 REMARK 3 5 2.3518 - 2.1833 0.95 2551 134 0.1386 0.1939 REMARK 3 6 2.1833 - 2.0546 0.95 2637 139 0.1427 0.1564 REMARK 3 7 2.0546 - 1.9518 0.94 2545 134 0.1579 0.1975 REMARK 3 8 1.9518 - 1.8669 0.93 2585 136 0.1812 0.2475 REMARK 3 9 1.8669 - 1.7950 0.93 2542 134 0.1889 0.2415 REMARK 3 10 1.7950 - 1.7331 0.88 2415 127 0.2311 0.2591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2120 REMARK 3 ANGLE : 0.738 2873 REMARK 3 CHIRALITY : 0.057 325 REMARK 3 PLANARITY : 0.005 364 REMARK 3 DIHEDRAL : 17.701 1312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 12:22) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8411 -13.6906 83.4647 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.3145 REMARK 3 T33: 0.2350 T12: -0.0114 REMARK 3 T13: -0.0388 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 4.5037 L22: 4.3463 REMARK 3 L33: 2.4615 L12: -4.4124 REMARK 3 L13: 1.1917 L23: -0.9290 REMARK 3 S TENSOR REMARK 3 S11: -0.2793 S12: -0.9576 S13: -0.1985 REMARK 3 S21: 0.3747 S22: 0.4018 S23: -0.0972 REMARK 3 S31: 0.1363 S32: 0.2072 S33: -0.2725 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 23:62) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3683 -23.6193 74.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.1564 REMARK 3 T33: 0.1781 T12: 0.0234 REMARK 3 T13: -0.0446 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.9417 L22: 2.3488 REMARK 3 L33: 4.6595 L12: 0.2186 REMARK 3 L13: 0.1056 L23: 1.1866 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0152 S13: -0.1363 REMARK 3 S21: 0.1640 S22: 0.0153 S23: -0.0582 REMARK 3 S31: 0.4538 S32: -0.1591 S33: -0.0553 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 63:69) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4933 -33.0600 73.0254 REMARK 3 T TENSOR REMARK 3 T11: 0.9075 T22: 0.3445 REMARK 3 T33: 0.3572 T12: -0.1190 REMARK 3 T13: -0.0396 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 5.3163 L22: 4.1506 REMARK 3 L33: 3.2176 L12: 4.6937 REMARK 3 L13: -4.1354 L23: -3.6537 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: 0.2930 S13: -0.8383 REMARK 3 S21: 0.7249 S22: 0.1588 S23: -0.4018 REMARK 3 S31: 2.0953 S32: -0.7745 S33: -0.0629 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 70:85) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3655 -29.2798 86.0606 REMARK 3 T TENSOR REMARK 3 T11: 0.7267 T22: 0.3297 REMARK 3 T33: 0.3559 T12: -0.0762 REMARK 3 T13: 0.0466 T23: 0.1063 REMARK 3 L TENSOR REMARK 3 L11: 2.7422 L22: 3.0512 REMARK 3 L33: 0.9707 L12: 1.6505 REMARK 3 L13: 1.3811 L23: 0.1668 REMARK 3 S TENSOR REMARK 3 S11: 0.1641 S12: -0.4760 S13: -0.7938 REMARK 3 S21: 0.3290 S22: 0.1391 S23: 0.3106 REMARK 3 S31: 1.3855 S32: -0.3696 S33: -0.1553 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 86:116) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5554 -17.9044 69.4238 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1281 REMARK 3 T33: 0.1648 T12: -0.0095 REMARK 3 T13: -0.0049 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 5.2691 L22: 2.9005 REMARK 3 L33: 4.5595 L12: -0.9908 REMARK 3 L13: 0.1406 L23: 0.4571 REMARK 3 S TENSOR REMARK 3 S11: 0.1405 S12: 0.0768 S13: -0.0856 REMARK 3 S21: -0.0301 S22: -0.0640 S23: 0.1400 REMARK 3 S31: 0.2450 S32: -0.2700 S33: -0.0775 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 117:130) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0299 -10.8113 71.9098 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.1571 REMARK 3 T33: 0.2382 T12: -0.0069 REMARK 3 T13: 0.0242 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.1247 L22: 2.2255 REMARK 3 L33: 2.3182 L12: -0.1011 REMARK 3 L13: 0.8055 L23: 0.4565 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: 0.0169 S13: 0.1260 REMARK 3 S21: 0.0543 S22: 0.0377 S23: 0.0934 REMARK 3 S31: -0.0708 S32: -0.0246 S33: 0.0805 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 131:140) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3975 -8.2333 77.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.2740 REMARK 3 T33: 0.2899 T12: 0.0098 REMARK 3 T13: 0.0224 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.3440 L22: 4.4241 REMARK 3 L33: 3.3815 L12: 0.4103 REMARK 3 L13: 3.2259 L23: 0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.3959 S12: -0.3599 S13: 0.3395 REMARK 3 S21: 0.4095 S22: 0.2188 S23: -0.0380 REMARK 3 S31: -0.4396 S32: -0.1794 S33: 0.3205 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 12:32) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7753 -6.6340 41.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.3899 REMARK 3 T33: 0.2295 T12: 0.0416 REMARK 3 T13: 0.0559 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.6809 L22: 3.8028 REMARK 3 L33: 6.6560 L12: 1.6878 REMARK 3 L13: 2.6006 L23: 1.8995 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.8785 S13: 0.0560 REMARK 3 S21: -0.2793 S22: 0.1774 S23: -0.2679 REMARK 3 S31: -0.0602 S32: 1.1132 S33: -0.2057 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 33:65) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3615 -1.5255 49.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.1703 REMARK 3 T33: 0.1818 T12: -0.0230 REMARK 3 T13: 0.0000 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.5512 L22: 1.8858 REMARK 3 L33: 5.7172 L12: 1.2568 REMARK 3 L13: 3.0272 L23: 2.7233 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.0252 S13: 0.0539 REMARK 3 S21: -0.0350 S22: 0.0347 S23: 0.0602 REMARK 3 S31: -0.1826 S32: -0.0531 S33: 0.0752 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 66:80) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9679 5.4432 46.4659 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.3034 REMARK 3 T33: 0.2975 T12: 0.0578 REMARK 3 T13: -0.0156 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.3798 L22: 6.7321 REMARK 3 L33: 3.2407 L12: 3.1244 REMARK 3 L13: 2.1080 L23: 4.3546 REMARK 3 S TENSOR REMARK 3 S11: -0.5041 S12: 0.3096 S13: 0.6165 REMARK 3 S21: -0.1150 S22: -0.2424 S23: 0.5837 REMARK 3 S31: -0.8921 S32: -0.0438 S33: 0.8245 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 81:105) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6169 -9.5910 53.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.1501 REMARK 3 T33: 0.1873 T12: -0.0106 REMARK 3 T13: -0.0019 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.4576 L22: 2.2033 REMARK 3 L33: 3.4715 L12: -1.4201 REMARK 3 L13: 0.3759 L23: -1.2953 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: -0.1633 S13: -0.0825 REMARK 3 S21: -0.0531 S22: -0.0038 S23: -0.0699 REMARK 3 S31: 0.2641 S32: 0.0688 S33: -0.1255 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 106:125) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7831 -11.7109 50.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.1662 REMARK 3 T33: 0.1576 T12: 0.0176 REMARK 3 T13: -0.0310 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.4314 L22: 4.9542 REMARK 3 L33: 5.7445 L12: 0.9107 REMARK 3 L13: 0.6573 L23: 0.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.3164 S12: -0.2896 S13: -0.4296 REMARK 3 S21: -0.1803 S22: -0.0318 S23: 0.1819 REMARK 3 S31: 0.4170 S32: -0.1892 S33: -0.3193 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 126:130) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5087 -18.2687 56.4622 REMARK 3 T TENSOR REMARK 3 T11: 0.9883 T22: 1.3517 REMARK 3 T33: 0.4480 T12: -0.0167 REMARK 3 T13: 0.2334 T23: 0.2205 REMARK 3 L TENSOR REMARK 3 L11: 8.6820 L22: 4.7473 REMARK 3 L33: 3.1582 L12: 0.9977 REMARK 3 L13: -1.7787 L23: -3.5263 REMARK 3 S TENSOR REMARK 3 S11: -0.4021 S12: -0.4524 S13: -0.6717 REMARK 3 S21: 1.4176 S22: -0.2376 S23: 0.3856 REMARK 3 S31: 0.7184 S32: -0.3708 S33: 0.5601 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 131:140) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7890 -17.8619 43.6419 REMARK 3 T TENSOR REMARK 3 T11: 0.6307 T22: 0.2580 REMARK 3 T33: 0.3338 T12: 0.0648 REMARK 3 T13: -0.0844 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 3.8779 L22: 4.8364 REMARK 3 L33: 5.8965 L12: -0.2301 REMARK 3 L13: -0.0817 L23: -2.7340 REMARK 3 S TENSOR REMARK 3 S11: 0.2744 S12: 0.2307 S13: -0.5370 REMARK 3 S21: -0.3496 S22: -0.0385 S23: -0.0088 REMARK 3 S31: 0.9215 S32: 0.1813 S33: -0.4377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28316, 1.28375, 1.28482 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 35.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% METHYL-2,4-PENTANEDIOL, 100 MM REMARK 280 HEPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 PHE A 11 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 ASP B 8 REMARK 465 PHE B 9 REMARK 465 SER B 10 REMARK 465 PHE B 11 REMARK 465 SER B 127 REMARK 465 GLU B 128 REMARK 465 LYS B 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 130 CG OD1 ND2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 45 OE2 GLU A 140 1.53 REMARK 500 HZ2 LYS A 118 O HOH A 303 1.57 REMARK 500 O HOH A 385 O HOH A 388 2.01 REMARK 500 O HOH A 383 O HOH A 397 2.02 REMARK 500 O HOH A 396 O HOH B 392 2.06 REMARK 500 O HOH B 354 O HOH B 385 2.08 REMARK 500 O HOH A 337 O HOH A 390 2.09 REMARK 500 O HOH B 370 O HOH B 394 2.09 REMARK 500 O HOH A 394 O HOH A 405 2.11 REMARK 500 O HOH B 301 O HOH B 335 2.11 REMARK 500 O HOH A 319 O HOH A 387 2.12 REMARK 500 O HOH B 317 O HOH B 384 2.15 REMARK 500 O HOH B 401 O HOH B 402 2.15 REMARK 500 O HOH B 377 O HOH B 394 2.17 REMARK 500 O HOH A 400 O HOH A 404 2.18 REMARK 500 NZ LYS B 100 O HOH B 301 2.19 REMARK 500 O HOH B 374 O HOH B 382 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 43 -121.37 55.94 REMARK 500 GLU B 43 -124.93 55.68 REMARK 500 ALA B 92 -47.04 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 102.2 REMARK 620 3 ASP A 101 OD1 88.4 162.5 REMARK 620 4 ASP A 101 OD2 105.5 110.1 53.0 REMARK 620 5 HOH A 360 O 104.1 105.2 85.3 127.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 NE2 REMARK 620 2 HIS B 90 NE2 105.6 REMARK 620 3 ASP B 101 OD1 90.2 157.9 REMARK 620 4 ASP B 101 OD2 105.6 105.4 54.5 REMARK 620 5 HOH B 357 O 113.4 100.8 86.4 124.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 5LD9 A 1 140 UNP Q8U1Y4 Q8U1Y4_PYRFU 1 140 DBREF 5LD9 B 1 140 UNP Q8U1Y4 Q8U1Y4_PYRFU 1 140 SEQRES 1 A 140 MET PRO SER SER SER LYS SER ASP PHE SER PHE SER THR SEQRES 2 A 140 LEU ILE ILE PRO GLN HIS TYR LEU ARG ALA ILE LEU LYS SEQRES 3 A 140 VAL VAL SER SER SER SER VAL GLU VAL CYS GLY PHE LEU SEQRES 4 A 140 PHE GLY LYS GLU ASN ARG VAL LEU LYS VAL ARG PHE ILE SEQRES 5 A 140 ARG ASN ARG LEU ASN SER PRO VAL GLU PHE GLU MET ASP SEQRES 6 A 140 PRO GLU GLU MET LEU LYS ALA LEU GLU GLU ALA GLU GLN SEQRES 7 A 140 GLU ASN LEU GLU VAL VAL GLY ILE PHE HIS SER HIS ILE SEQRES 8 A 140 ALA CYS PRO PRO ILE PRO SER GLY LYS ASP LEU GLU GLY SEQRES 9 A 140 MET LYS ARG TRP PRO VAL ILE TRP LEU ILE VAL ASN GLU SEQRES 10 A 140 LYS GLY GLU TYR LYS ALA TRP ILE LEU SER GLU LYS ASN SEQRES 11 A 140 LYS ILE SER GLU VAL LYS ILE VAL VAL GLU SEQRES 1 B 140 MET PRO SER SER SER LYS SER ASP PHE SER PHE SER THR SEQRES 2 B 140 LEU ILE ILE PRO GLN HIS TYR LEU ARG ALA ILE LEU LYS SEQRES 3 B 140 VAL VAL SER SER SER SER VAL GLU VAL CYS GLY PHE LEU SEQRES 4 B 140 PHE GLY LYS GLU ASN ARG VAL LEU LYS VAL ARG PHE ILE SEQRES 5 B 140 ARG ASN ARG LEU ASN SER PRO VAL GLU PHE GLU MET ASP SEQRES 6 B 140 PRO GLU GLU MET LEU LYS ALA LEU GLU GLU ALA GLU GLN SEQRES 7 B 140 GLU ASN LEU GLU VAL VAL GLY ILE PHE HIS SER HIS ILE SEQRES 8 B 140 ALA CYS PRO PRO ILE PRO SER GLY LYS ASP LEU GLU GLY SEQRES 9 B 140 MET LYS ARG TRP PRO VAL ILE TRP LEU ILE VAL ASN GLU SEQRES 10 B 140 LYS GLY GLU TYR LYS ALA TRP ILE LEU SER GLU LYS ASN SEQRES 11 B 140 LYS ILE SER GLU VAL LYS ILE VAL VAL GLU HET ZN A 201 1 HET CL A 202 1 HET ZN B 201 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL CL 1- FORMUL 6 HOH *209(H2 O) HELIX 1 AA1 PRO A 17 SER A 31 1 15 HELIX 2 AA2 ASP A 65 GLU A 79 1 15 HELIX 3 AA3 SER A 98 TRP A 108 1 11 HELIX 4 AA4 GLN B 18 SER B 30 1 13 HELIX 5 AA5 ASP B 65 GLU B 79 1 15 HELIX 6 AA6 SER B 98 TRP B 108 1 11 SHEET 1 AA1 8 THR A 13 ILE A 16 0 SHEET 2 AA1 8 ARG A 45 ILE A 52 1 O VAL A 46 N ILE A 15 SHEET 3 AA1 8 CYS A 36 LYS A 42 -1 N PHE A 40 O LEU A 47 SHEET 4 AA1 8 GLU A 82 HIS A 90 -1 O GLU A 82 N GLY A 41 SHEET 5 AA1 8 ILE A 111 ASN A 116 1 O LEU A 113 N ILE A 86 SHEET 6 AA1 8 TYR A 121 LEU A 126 -1 O LYS A 122 N ILE A 114 SHEET 7 AA1 8 ILE A 132 VAL A 139 -1 O VAL A 135 N ALA A 123 SHEET 8 AA1 8 THR A 13 ILE A 16 1 N LEU A 14 O VAL A 138 SHEET 1 AA2 8 THR B 13 PRO B 17 0 SHEET 2 AA2 8 ARG B 45 ILE B 52 1 O VAL B 46 N ILE B 15 SHEET 3 AA2 8 CYS B 36 LYS B 42 -1 N PHE B 40 O LEU B 47 SHEET 4 AA2 8 GLU B 82 HIS B 90 -1 O GLY B 85 N LEU B 39 SHEET 5 AA2 8 ILE B 111 ASN B 116 1 O LEU B 113 N ILE B 86 SHEET 6 AA2 8 TYR B 121 ILE B 125 -1 O TRP B 124 N TRP B 112 SHEET 7 AA2 8 SER B 133 GLU B 140 -1 O VAL B 135 N ALA B 123 SHEET 8 AA2 8 THR B 13 PRO B 17 1 N LEU B 14 O VAL B 138 SSBOND 1 CYS A 93 CYS B 93 1555 1555 2.04 LINK NE2 HIS A 88 ZN ZN A 201 1555 1555 2.05 LINK NE2 HIS A 90 ZN ZN A 201 1555 1555 2.05 LINK OD1 ASP A 101 ZN ZN A 201 1555 1555 2.68 LINK OD2 ASP A 101 ZN ZN A 201 1555 1555 2.01 LINK ZN ZN A 201 O HOH A 360 1555 1555 2.07 LINK NE2 HIS B 88 ZN ZN B 201 1555 1555 2.05 LINK NE2 HIS B 90 ZN ZN B 201 1555 1555 2.04 LINK OD1 ASP B 101 ZN ZN B 201 1555 1555 2.65 LINK OD2 ASP B 101 ZN ZN B 201 1555 1555 1.92 LINK ZN ZN B 201 O HOH B 357 1555 1555 2.12 SITE 1 AC1 4 HIS A 88 HIS A 90 ASP A 101 HOH A 360 SITE 1 AC2 4 HIS B 88 HIS B 90 ASP B 101 HOH B 357 CRYST1 34.202 37.147 60.131 97.29 104.18 100.07 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029238 0.005193 0.008446 0.00000 SCALE2 0.000000 0.027341 0.004942 0.00000 SCALE3 0.000000 0.000000 0.017431 0.00000