data_5LDM # _entry.id 5LDM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LDM pdb_00005ldm 10.2210/pdb5ldm/pdb WWPDB D_1200000565 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-18 2 'Structure model' 1 1 2017-02-08 3 'Structure model' 1 2 2018-01-17 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LDM _pdbx_database_status.recvd_initial_deposition_date 2016-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Myllykoski, M.' 1 'Kursula, P.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'PLoS ONE' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1932-6203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first e0170355 _citation.page_last e0170355 _citation.title 'Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.pone.0170355 _citation.pdbx_database_id_PubMed 28141848 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Myllykoski, M.' 1 ? primary 'Kursula, P.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA 2',3'-cyclic phosphodiesterase ; 20045.029 2 3.1.4.- ? ? ? 2 non-polymer syn "ADENOSINE-2'-MONOPHOSPHATE" 347.221 2 ? ? ? ? 3 non-polymer nat 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 63 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;RNA 2',3'-CPDase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMSEPQRLFFAIDLPAEIREQIIHWRAKHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDA GQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSF ARGRTRYTPLKRWALTQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSEPQRLFFAIDLPAEIREQIIHWRAKHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDA GQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSF ARGRTRYTPLKRWALTQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-2'-MONOPHOSPHATE" 2AM 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 SER n 1 4 GLU n 1 5 PRO n 1 6 GLN n 1 7 ARG n 1 8 LEU n 1 9 PHE n 1 10 PHE n 1 11 ALA n 1 12 ILE n 1 13 ASP n 1 14 LEU n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 ILE n 1 19 ARG n 1 20 GLU n 1 21 GLN n 1 22 ILE n 1 23 ILE n 1 24 HIS n 1 25 TRP n 1 26 ARG n 1 27 ALA n 1 28 LYS n 1 29 HIS n 1 30 PHE n 1 31 PRO n 1 32 PRO n 1 33 GLU n 1 34 ALA n 1 35 GLY n 1 36 ARG n 1 37 PRO n 1 38 VAL n 1 39 ALA n 1 40 ALA n 1 41 ASP n 1 42 ASN n 1 43 LEU n 1 44 HIS n 1 45 LEU n 1 46 THR n 1 47 LEU n 1 48 ALA n 1 49 PHE n 1 50 LEU n 1 51 GLY n 1 52 GLU n 1 53 VAL n 1 54 SER n 1 55 ALA n 1 56 GLU n 1 57 LYS n 1 58 GLU n 1 59 LYS n 1 60 ALA n 1 61 LEU n 1 62 SER n 1 63 LEU n 1 64 LEU n 1 65 ALA n 1 66 GLY n 1 67 ARG n 1 68 ILE n 1 69 ARG n 1 70 GLN n 1 71 PRO n 1 72 GLY n 1 73 PHE n 1 74 THR n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 ASP n 1 79 ASP n 1 80 ALA n 1 81 GLY n 1 82 GLN n 1 83 TRP n 1 84 LEU n 1 85 ARG n 1 86 SER n 1 87 ARG n 1 88 VAL n 1 89 VAL n 1 90 TRP n 1 91 LEU n 1 92 GLY n 1 93 MET n 1 94 ARG n 1 95 GLN n 1 96 PRO n 1 97 PRO n 1 98 ARG n 1 99 GLY n 1 100 LEU n 1 101 ILE n 1 102 GLN n 1 103 LEU n 1 104 ALA n 1 105 ASN n 1 106 MET n 1 107 LEU n 1 108 ARG n 1 109 SER n 1 110 GLN n 1 111 ALA n 1 112 ALA n 1 113 ARG n 1 114 SER n 1 115 GLY n 1 116 CYS n 1 117 PHE n 1 118 GLN n 1 119 SER n 1 120 ASN n 1 121 ARG n 1 122 PRO n 1 123 PHE n 1 124 HIS n 1 125 PRO n 1 126 HIS n 1 127 ILE n 1 128 THR n 1 129 LEU n 1 130 LEU n 1 131 ARG n 1 132 ASP n 1 133 ALA n 1 134 SER n 1 135 GLU n 1 136 ALA n 1 137 VAL n 1 138 THR n 1 139 ILE n 1 140 PRO n 1 141 PRO n 1 142 PRO n 1 143 GLY n 1 144 PHE n 1 145 ASN n 1 146 TRP n 1 147 SER n 1 148 TYR n 1 149 ALA n 1 150 VAL n 1 151 THR n 1 152 GLU n 1 153 PHE n 1 154 THR n 1 155 LEU n 1 156 TYR n 1 157 ALA n 1 158 SER n 1 159 SER n 1 160 PHE n 1 161 ALA n 1 162 ARG n 1 163 GLY n 1 164 ARG n 1 165 THR n 1 166 ARG n 1 167 TYR n 1 168 THR n 1 169 PRO n 1 170 LEU n 1 171 LYS n 1 172 ARG n 1 173 TRP n 1 174 ALA n 1 175 LEU n 1 176 THR n 1 177 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 177 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'thpR, ECBD_3472' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli (strain B / BL21-DE3)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 469008 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pTH 27' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2AM non-polymer . "ADENOSINE-2'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 HIS 24 23 23 HIS HIS A . n A 1 25 TRP 25 24 24 TRP TRP A . n A 1 26 ARG 26 25 25 ARG ARG A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 PRO 31 30 30 PRO PRO A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 HIS 44 43 43 HIS HIS A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 GLU 58 57 57 GLU GLU A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 PRO 71 70 70 PRO PRO A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 PHE 73 72 72 PHE PHE A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 TRP 83 82 82 TRP TRP A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 TRP 90 89 89 TRP TRP A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 MET 93 92 92 MET MET A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 ASN 105 104 104 ASN ASN A . n A 1 106 MET 106 105 105 MET MET A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 CYS 116 115 115 CYS CYS A . n A 1 117 PHE 117 116 116 PHE PHE A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 ASN 120 119 119 ASN ASN A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 PHE 123 122 122 PHE PHE A . n A 1 124 HIS 124 123 123 HIS HIS A . n A 1 125 PRO 125 124 124 PRO PRO A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 ILE 127 126 126 ILE ILE A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 ARG 131 130 130 ARG ARG A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ALA 133 132 132 ALA ALA A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 ALA 136 135 135 ALA ALA A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 THR 138 137 137 THR THR A . n A 1 139 ILE 139 138 138 ILE ILE A . n A 1 140 PRO 140 139 139 PRO PRO A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 GLY 143 142 142 GLY GLY A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 ASN 145 144 144 ASN ASN A . n A 1 146 TRP 146 145 145 TRP TRP A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 ALA 149 148 148 ALA ALA A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 THR 151 150 150 THR THR A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 PHE 153 152 152 PHE PHE A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 TYR 156 155 155 TYR TYR A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 ALA 161 160 160 ALA ALA A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 GLY 163 162 162 GLY GLY A . n A 1 164 ARG 164 163 163 ARG ARG A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 ARG 166 165 165 ARG ARG A . n A 1 167 TYR 167 166 166 TYR TYR A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 LYS 171 170 170 LYS LYS A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 TRP 173 172 172 TRP TRP A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 GLN 177 176 176 GLN GLN A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MET 2 1 ? ? ? B . n B 1 3 SER 3 2 2 SER SER B . n B 1 4 GLU 4 3 3 GLU GLU B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 GLN 6 5 5 GLN GLN B . n B 1 7 ARG 7 6 6 ARG ARG B . n B 1 8 LEU 8 7 7 LEU LEU B . n B 1 9 PHE 9 8 8 PHE PHE B . n B 1 10 PHE 10 9 9 PHE PHE B . n B 1 11 ALA 11 10 10 ALA ALA B . n B 1 12 ILE 12 11 11 ILE ILE B . n B 1 13 ASP 13 12 12 ASP ASP B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 ALA 16 15 15 ALA ALA B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 ILE 18 17 17 ILE ILE B . n B 1 19 ARG 19 18 18 ARG ARG B . n B 1 20 GLU 20 19 19 GLU GLU B . n B 1 21 GLN 21 20 20 GLN GLN B . n B 1 22 ILE 22 21 21 ILE ILE B . n B 1 23 ILE 23 22 22 ILE ILE B . n B 1 24 HIS 24 23 23 HIS HIS B . n B 1 25 TRP 25 24 24 TRP TRP B . n B 1 26 ARG 26 25 25 ARG ARG B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 HIS 29 28 28 HIS HIS B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 PRO 31 30 30 PRO PRO B . n B 1 32 PRO 32 31 31 PRO PRO B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 ALA 34 33 33 ALA ALA B . n B 1 35 GLY 35 34 34 GLY GLY B . n B 1 36 ARG 36 35 35 ARG ARG B . n B 1 37 PRO 37 36 36 PRO PRO B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 ALA 39 38 38 ALA ALA B . n B 1 40 ALA 40 39 39 ALA ALA B . n B 1 41 ASP 41 40 40 ASP ASP B . n B 1 42 ASN 42 41 41 ASN ASN B . n B 1 43 LEU 43 42 42 LEU LEU B . n B 1 44 HIS 44 43 43 HIS HIS B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 THR 46 45 45 THR THR B . n B 1 47 LEU 47 46 46 LEU LEU B . n B 1 48 ALA 48 47 47 ALA ALA B . n B 1 49 PHE 49 48 48 PHE PHE B . n B 1 50 LEU 50 49 49 LEU LEU B . n B 1 51 GLY 51 50 50 GLY GLY B . n B 1 52 GLU 52 51 51 GLU GLU B . n B 1 53 VAL 53 52 52 VAL VAL B . n B 1 54 SER 54 53 53 SER SER B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 GLU 56 55 55 GLU GLU B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 GLU 58 57 57 GLU GLU B . n B 1 59 LYS 59 58 58 LYS LYS B . n B 1 60 ALA 60 59 59 ALA ALA B . n B 1 61 LEU 61 60 60 LEU LEU B . n B 1 62 SER 62 61 61 SER SER B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 LEU 64 63 63 LEU LEU B . n B 1 65 ALA 65 64 64 ALA ALA B . n B 1 66 GLY 66 65 65 GLY GLY B . n B 1 67 ARG 67 66 66 ARG ARG B . n B 1 68 ILE 68 67 67 ILE ILE B . n B 1 69 ARG 69 68 68 ARG ARG B . n B 1 70 GLN 70 69 69 GLN GLN B . n B 1 71 PRO 71 70 70 PRO PRO B . n B 1 72 GLY 72 71 71 GLY GLY B . n B 1 73 PHE 73 72 72 PHE PHE B . n B 1 74 THR 74 73 73 THR THR B . n B 1 75 LEU 75 74 74 LEU LEU B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 ASP 78 77 77 ASP ASP B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 ALA 80 79 79 ALA ALA B . n B 1 81 GLY 81 80 80 GLY GLY B . n B 1 82 GLN 82 81 81 GLN GLN B . n B 1 83 TRP 83 82 82 TRP TRP B . n B 1 84 LEU 84 83 83 LEU LEU B . n B 1 85 ARG 85 84 84 ARG ARG B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 ARG 87 86 86 ARG ARG B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 VAL 89 88 88 VAL VAL B . n B 1 90 TRP 90 89 89 TRP TRP B . n B 1 91 LEU 91 90 90 LEU LEU B . n B 1 92 GLY 92 91 91 GLY GLY B . n B 1 93 MET 93 92 92 MET MET B . n B 1 94 ARG 94 93 93 ARG ARG B . n B 1 95 GLN 95 94 94 GLN GLN B . n B 1 96 PRO 96 95 95 PRO PRO B . n B 1 97 PRO 97 96 96 PRO PRO B . n B 1 98 ARG 98 97 97 ARG ARG B . n B 1 99 GLY 99 98 98 GLY GLY B . n B 1 100 LEU 100 99 99 LEU LEU B . n B 1 101 ILE 101 100 100 ILE ILE B . n B 1 102 GLN 102 101 101 GLN GLN B . n B 1 103 LEU 103 102 102 LEU LEU B . n B 1 104 ALA 104 103 103 ALA ALA B . n B 1 105 ASN 105 104 104 ASN ASN B . n B 1 106 MET 106 105 105 MET MET B . n B 1 107 LEU 107 106 106 LEU LEU B . n B 1 108 ARG 108 107 107 ARG ARG B . n B 1 109 SER 109 108 108 SER SER B . n B 1 110 GLN 110 109 109 GLN GLN B . n B 1 111 ALA 111 110 110 ALA ALA B . n B 1 112 ALA 112 111 111 ALA ALA B . n B 1 113 ARG 113 112 112 ARG ARG B . n B 1 114 SER 114 113 113 SER SER B . n B 1 115 GLY 115 114 114 GLY GLY B . n B 1 116 CYS 116 115 115 CYS CYS B . n B 1 117 PHE 117 116 116 PHE PHE B . n B 1 118 GLN 118 117 ? ? ? B . n B 1 119 SER 119 118 ? ? ? B . n B 1 120 ASN 120 119 ? ? ? B . n B 1 121 ARG 121 120 ? ? ? B . n B 1 122 PRO 122 121 121 PRO PRO B . n B 1 123 PHE 123 122 122 PHE PHE B . n B 1 124 HIS 124 123 123 HIS HIS B . n B 1 125 PRO 125 124 124 PRO PRO B . n B 1 126 HIS 126 125 125 HIS HIS B . n B 1 127 ILE 127 126 126 ILE ILE B . n B 1 128 THR 128 127 127 THR THR B . n B 1 129 LEU 129 128 128 LEU LEU B . n B 1 130 LEU 130 129 129 LEU LEU B . n B 1 131 ARG 131 130 130 ARG ARG B . n B 1 132 ASP 132 131 131 ASP ASP B . n B 1 133 ALA 133 132 132 ALA ALA B . n B 1 134 SER 134 133 133 SER SER B . n B 1 135 GLU 135 134 134 GLU GLU B . n B 1 136 ALA 136 135 135 ALA ALA B . n B 1 137 VAL 137 136 136 VAL VAL B . n B 1 138 THR 138 137 137 THR THR B . n B 1 139 ILE 139 138 138 ILE ILE B . n B 1 140 PRO 140 139 139 PRO PRO B . n B 1 141 PRO 141 140 140 PRO PRO B . n B 1 142 PRO 142 141 141 PRO PRO B . n B 1 143 GLY 143 142 142 GLY GLY B . n B 1 144 PHE 144 143 143 PHE PHE B . n B 1 145 ASN 145 144 144 ASN ASN B . n B 1 146 TRP 146 145 145 TRP TRP B . n B 1 147 SER 147 146 146 SER SER B . n B 1 148 TYR 148 147 147 TYR TYR B . n B 1 149 ALA 149 148 148 ALA ALA B . n B 1 150 VAL 150 149 149 VAL VAL B . n B 1 151 THR 151 150 150 THR THR B . n B 1 152 GLU 152 151 151 GLU GLU B . n B 1 153 PHE 153 152 152 PHE PHE B . n B 1 154 THR 154 153 153 THR THR B . n B 1 155 LEU 155 154 154 LEU LEU B . n B 1 156 TYR 156 155 155 TYR TYR B . n B 1 157 ALA 157 156 156 ALA ALA B . n B 1 158 SER 158 157 157 SER SER B . n B 1 159 SER 159 158 158 SER SER B . n B 1 160 PHE 160 159 159 PHE PHE B . n B 1 161 ALA 161 160 160 ALA ALA B . n B 1 162 ARG 162 161 161 ARG ARG B . n B 1 163 GLY 163 162 162 GLY GLY B . n B 1 164 ARG 164 163 163 ARG ARG B . n B 1 165 THR 165 164 164 THR THR B . n B 1 166 ARG 166 165 165 ARG ARG B . n B 1 167 TYR 167 166 166 TYR TYR B . n B 1 168 THR 168 167 167 THR THR B . n B 1 169 PRO 169 168 168 PRO PRO B . n B 1 170 LEU 170 169 169 LEU LEU B . n B 1 171 LYS 171 170 170 LYS LYS B . n B 1 172 ARG 172 171 171 ARG ARG B . n B 1 173 TRP 173 172 172 TRP TRP B . n B 1 174 ALA 174 173 173 ALA ALA B . n B 1 175 LEU 175 174 174 LEU LEU B . n B 1 176 THR 176 175 175 THR THR B . n B 1 177 GLN 177 176 176 GLN GLN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2AM 1 201 1 2AM 2AM A . D 3 CL 1 202 1 CL CL A . E 2 2AM 1 201 2 2AM 2AM B . F 4 HOH 1 301 6 HOH HOH A . F 4 HOH 2 302 62 HOH HOH A . F 4 HOH 3 303 48 HOH HOH A . F 4 HOH 4 304 4 HOH HOH A . F 4 HOH 5 305 63 HOH HOH A . F 4 HOH 6 306 56 HOH HOH A . F 4 HOH 7 307 32 HOH HOH A . F 4 HOH 8 308 22 HOH HOH A . F 4 HOH 9 309 60 HOH HOH A . F 4 HOH 10 310 2 HOH HOH A . F 4 HOH 11 311 25 HOH HOH A . F 4 HOH 12 312 11 HOH HOH A . F 4 HOH 13 313 3 HOH HOH A . F 4 HOH 14 314 20 HOH HOH A . F 4 HOH 15 315 43 HOH HOH A . F 4 HOH 16 316 23 HOH HOH A . F 4 HOH 17 317 5 HOH HOH A . F 4 HOH 18 318 57 HOH HOH A . F 4 HOH 19 319 1 HOH HOH A . F 4 HOH 20 320 27 HOH HOH A . F 4 HOH 21 321 59 HOH HOH A . F 4 HOH 22 322 29 HOH HOH A . F 4 HOH 23 323 55 HOH HOH A . F 4 HOH 24 324 37 HOH HOH A . F 4 HOH 25 325 30 HOH HOH A . F 4 HOH 26 326 18 HOH HOH A . F 4 HOH 27 327 58 HOH HOH A . F 4 HOH 28 328 31 HOH HOH A . F 4 HOH 29 329 34 HOH HOH A . F 4 HOH 30 330 54 HOH HOH A . F 4 HOH 31 331 28 HOH HOH A . F 4 HOH 32 332 41 HOH HOH A . F 4 HOH 33 333 61 HOH HOH A . F 4 HOH 34 334 24 HOH HOH A . G 4 HOH 1 301 64 HOH HOH B . G 4 HOH 2 302 65 HOH HOH B . G 4 HOH 3 303 8 HOH HOH B . G 4 HOH 4 304 44 HOH HOH B . G 4 HOH 5 305 12 HOH HOH B . G 4 HOH 6 306 9 HOH HOH B . G 4 HOH 7 307 21 HOH HOH B . G 4 HOH 8 308 14 HOH HOH B . G 4 HOH 9 309 13 HOH HOH B . G 4 HOH 10 310 35 HOH HOH B . G 4 HOH 11 311 39 HOH HOH B . G 4 HOH 12 312 7 HOH HOH B . G 4 HOH 13 313 68 HOH HOH B . G 4 HOH 14 314 10 HOH HOH B . G 4 HOH 15 315 46 HOH HOH B . G 4 HOH 16 316 45 HOH HOH B . G 4 HOH 17 317 17 HOH HOH B . G 4 HOH 18 318 40 HOH HOH B . G 4 HOH 19 319 67 HOH HOH B . G 4 HOH 20 320 19 HOH HOH B . G 4 HOH 21 321 16 HOH HOH B . G 4 HOH 22 322 33 HOH HOH B . G 4 HOH 23 323 66 HOH HOH B . G 4 HOH 24 324 38 HOH HOH B . G 4 HOH 25 325 15 HOH HOH B . G 4 HOH 26 326 53 HOH HOH B . G 4 HOH 27 327 50 HOH HOH B . G 4 HOH 28 328 36 HOH HOH B . G 4 HOH 29 329 69 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.2_1309 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LDM _cell.details ? _cell.formula_units_Z ? _cell.length_a 108.070 _cell.length_a_esd ? _cell.length_b 108.070 _cell.length_b_esd ? _cell.length_c 72.640 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LDM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl pH 7.5, 0.2 M MgCl2, 12% (w/v) PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.04 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'MAX II BEAMLINE I911-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I911-2 _diffrn_source.pdbx_synchrotron_site 'MAX II' # _reflns.B_iso_Wilson_estimate 47.4 _reflns.entry_id 5LDM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.46 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15451 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.60 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.01 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.46 _reflns_shell.d_res_low 2.52 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.51 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 52.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.621 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.58 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.712 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 64.03 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LDM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.460 _refine.ls_d_res_low 29.035 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15432 _refine.ls_number_reflns_R_free 1544 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.53 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2028 _refine.ls_R_factor_R_free 0.2528 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1970 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDBid: 5ldi' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.61 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.35 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2770 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 2880 _refine_hist.d_res_high 2.460 _refine_hist.d_res_low 29.035 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 2943 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.937 ? 4015 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.405 ? 1097 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 427 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 517 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.4602 2.5395 . . 78 728 57.00 . . . 0.3944 . 0.3424 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5395 2.6302 . . 138 1210 93.00 . . . 0.3850 . 0.2970 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6302 2.7355 . . 143 1295 100.00 . . . 0.3005 . 0.2563 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7355 2.8599 . . 144 1289 100.00 . . . 0.3416 . 0.2528 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8599 3.0105 . . 146 1314 100.00 . . . 0.3090 . 0.2425 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0105 3.1989 . . 145 1304 100.00 . . . 0.3151 . 0.2337 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1989 3.4455 . . 146 1309 100.00 . . . 0.2640 . 0.2155 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4455 3.7916 . . 146 1307 100.00 . . . 0.2847 . 0.2019 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7916 4.3386 . . 150 1338 100.00 . . . 0.2112 . 0.1673 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.3386 5.4603 . . 148 1353 100.00 . . . 0.1970 . 0.1470 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.4603 29.0372 . . 160 1441 100.00 . . . 0.2089 . 0.1688 . . . . . . . . . . # _struct.entry_id 5LDM _struct.title ;Crystal structure of E.coli LigT complexed with 2'-AMP ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LDM _struct_keywords.text 'Enzyme, 2H phosphoesterase/ligase, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A140NFI1_ECOBD _struct_ref.pdbx_db_accession A0A140NFI1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSEPQRLFFAIDLPAEIREQIIHWRAKHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAG QWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA RGRTRYTPLKRWALTQ ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LDM A 2 ? 177 ? A0A140NFI1 1 ? 176 ? 1 176 2 1 5LDM B 2 ? 177 ? A0A140NFI1 1 ? 176 ? 1 176 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5LDM GLY A 1 ? UNP A0A140NFI1 ? ? 'expression tag' 0 1 2 5LDM GLY B 1 ? UNP A0A140NFI1 ? ? 'expression tag' 0 2 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 15 ? PHE A 30 ? PRO A 14 PHE A 29 1 ? 16 HELX_P HELX_P2 AA2 PRO A 31 ? GLY A 35 ? PRO A 30 GLY A 34 5 ? 5 HELX_P HELX_P3 AA3 ALA A 39 ? LEU A 43 ? ALA A 38 LEU A 42 5 ? 5 HELX_P HELX_P4 AA4 SER A 54 ? ARG A 67 ? SER A 53 ARG A 66 1 ? 14 HELX_P HELX_P5 AA5 PRO A 97 ? SER A 114 ? PRO A 96 SER A 113 1 ? 18 HELX_P HELX_P6 AA6 PRO B 15 ? PHE B 30 ? PRO B 14 PHE B 29 1 ? 16 HELX_P HELX_P7 AA7 PRO B 31 ? GLY B 35 ? PRO B 30 GLY B 34 5 ? 5 HELX_P HELX_P8 AA8 ALA B 39 ? LEU B 43 ? ALA B 38 LEU B 42 5 ? 5 HELX_P HELX_P9 AA9 SER B 54 ? GLY B 66 ? SER B 53 GLY B 65 1 ? 13 HELX_P HELX_P10 AB1 PRO B 97 ? ALA B 112 ? PRO B 96 ALA B 111 1 ? 16 HELX_P HELX_P11 AB2 ARG B 113 ? GLY B 115 ? ARG B 112 GLY B 114 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 45 ? VAL A 53 ? LEU A 44 VAL A 52 AA1 2 GLN A 6 ? ILE A 12 ? GLN A 5 ILE A 11 AA1 3 GLU A 152 ? ALA A 161 ? GLU A 151 ALA A 160 AA1 4 ARG A 164 ? ALA A 174 ? ARG A 163 ALA A 173 AA2 1 ARG A 36 ? PRO A 37 ? ARG A 35 PRO A 36 AA2 2 ILE A 127 ? ARG A 131 ? ILE A 126 ARG A 130 AA2 3 VAL A 88 ? GLY A 92 ? VAL A 87 GLY A 91 AA2 4 ASP A 79 ? TRP A 83 ? ASP A 78 TRP A 82 AA3 1 PHE A 73 ? THR A 76 ? PHE A 72 THR A 75 AA3 2 SER A 147 ? VAL A 150 ? SER A 146 VAL A 149 AA4 1 LEU B 45 ? VAL B 53 ? LEU B 44 VAL B 52 AA4 2 GLN B 6 ? ILE B 12 ? GLN B 5 ILE B 11 AA4 3 GLU B 152 ? ALA B 161 ? GLU B 151 ALA B 160 AA4 4 ARG B 164 ? ALA B 174 ? ARG B 163 ALA B 173 AA5 1 ARG B 36 ? PRO B 37 ? ARG B 35 PRO B 36 AA5 2 HIS B 126 ? ARG B 131 ? HIS B 125 ARG B 130 AA5 3 VAL B 88 ? GLY B 92 ? VAL B 87 GLY B 91 AA5 4 ASP B 79 ? TRP B 83 ? ASP B 78 TRP B 82 AA6 1 PHE B 73 ? THR B 76 ? PHE B 72 THR B 75 AA6 2 SER B 147 ? VAL B 150 ? SER B 146 VAL B 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 47 ? O LEU A 46 N PHE A 10 ? N PHE A 9 AA1 2 3 N ARG A 7 ? N ARG A 6 O SER A 158 ? O SER A 157 AA1 3 4 N SER A 159 ? N SER A 158 O ARG A 166 ? O ARG A 165 AA2 1 2 N ARG A 36 ? N ARG A 35 O ARG A 131 ? O ARG A 130 AA2 2 3 O ILE A 127 ? O ILE A 126 N LEU A 91 ? N LEU A 90 AA2 3 4 O GLY A 92 ? O GLY A 91 N ASP A 79 ? N ASP A 78 AA3 1 2 N PHE A 73 ? N PHE A 72 O VAL A 150 ? O VAL A 149 AA4 1 2 O VAL B 53 ? O VAL B 52 N GLN B 6 ? N GLN B 5 AA4 2 3 N ARG B 7 ? N ARG B 6 O SER B 158 ? O SER B 157 AA4 3 4 N LEU B 155 ? N LEU B 154 O LYS B 171 ? O LYS B 170 AA5 1 2 N ARG B 36 ? N ARG B 35 O ARG B 131 ? O ARG B 130 AA5 2 3 O LEU B 129 ? O LEU B 128 N VAL B 89 ? N VAL B 88 AA5 3 4 O VAL B 88 ? O VAL B 87 N TRP B 83 ? N TRP B 82 AA6 1 2 N LEU B 75 ? N LEU B 74 O TYR B 148 ? O TYR B 147 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2AM 201 ? 10 'binding site for residue 2AM A 201' AC2 Software A CL 202 ? 2 'binding site for residue CL A 202' AC3 Software B 2AM 201 ? 8 'binding site for residue 2AM B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS A 44 ? HIS A 43 . ? 1_555 ? 2 AC1 10 THR A 46 ? THR A 45 . ? 1_555 ? 3 AC1 10 PHE A 49 ? PHE A 48 . ? 1_555 ? 4 AC1 10 HIS A 126 ? HIS A 125 . ? 1_555 ? 5 AC1 10 THR A 128 ? THR A 127 . ? 1_555 ? 6 AC1 10 ARG A 131 ? ARG A 130 . ? 1_555 ? 7 AC1 10 TYR A 167 ? TYR A 166 . ? 1_555 ? 8 AC1 10 HOH F . ? HOH A 323 . ? 1_555 ? 9 AC1 10 ARG B 87 ? ARG B 86 . ? 1_555 ? 10 AC1 10 ASP B 132 ? ASP B 131 . ? 1_555 ? 11 AC2 2 ALA A 39 ? ALA A 38 . ? 1_555 ? 12 AC2 2 ASN A 42 ? ASN A 41 . ? 1_555 ? 13 AC3 8 ARG B 7 ? ARG B 6 . ? 1_555 ? 14 AC3 8 HIS B 44 ? HIS B 43 . ? 1_555 ? 15 AC3 8 THR B 46 ? THR B 45 . ? 1_555 ? 16 AC3 8 PHE B 49 ? PHE B 48 . ? 1_555 ? 17 AC3 8 HIS B 126 ? HIS B 125 . ? 1_555 ? 18 AC3 8 THR B 128 ? THR B 127 . ? 1_555 ? 19 AC3 8 ARG B 131 ? ARG B 130 . ? 1_555 ? 20 AC3 8 TYR B 167 ? TYR B 166 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 47 ? ? -170.26 125.63 2 1 THR A 175 ? ? 74.20 -4.35 3 1 PHE B 159 ? ? -153.26 75.58 4 1 ARG B 161 ? ? 59.14 -126.55 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 23.8002 -39.5382 21.2884 0.4212 0.3878 0.6393 -0.0469 0.0033 0.0166 8.1637 2.5554 7.6628 -0.2966 4.3495 0.6151 0.6282 0.2529 1.1604 0.2181 -0.2598 -0.8641 -0.2954 0.8725 -0.2514 'X-RAY DIFFRACTION' 2 ? refined 6.4018 -32.9244 10.2894 0.4536 0.5851 0.3983 0.0133 -0.0191 0.0319 5.8992 3.1745 9.7205 -1.1097 1.0064 -5.1118 -0.3040 1.0938 0.5658 -1.3141 -0.0036 -0.3357 0.2866 -0.2767 0.2108 'X-RAY DIFFRACTION' 3 ? refined 21.9940 -36.3906 21.5925 0.4431 0.4187 0.4922 -0.0631 0.0335 -0.0106 8.9813 5.8562 7.8786 -3.0190 5.6050 -2.6145 0.1719 1.1157 0.3767 -0.4090 -0.2762 -0.7945 0.0603 0.8630 0.0910 'X-RAY DIFFRACTION' 4 ? refined 14.8952 -36.2193 27.6629 0.4755 0.4008 0.4280 -0.0368 -0.0903 -0.1030 5.3229 2.5241 2.1482 -1.0483 0.9653 -0.8526 0.0130 -0.1337 0.5802 0.4577 -0.0632 -0.5205 -0.0906 0.2811 0.0282 'X-RAY DIFFRACTION' 5 ? refined 19.8735 -37.9518 35.7304 0.7815 0.4843 0.6266 -0.0503 -0.1382 -0.1127 2.0465 8.6376 4.1961 3.6438 -2.0541 -2.2181 0.3935 -0.7842 -0.1970 1.1134 -0.3104 -0.8129 -0.4147 0.6838 -0.2581 'X-RAY DIFFRACTION' 6 ? refined 16.9770 -27.3701 24.2355 0.6478 0.5050 0.8458 -0.1104 -0.0819 -0.0377 6.0063 4.1324 4.7599 -3.4078 -0.1912 -2.5453 -0.3036 -0.2310 1.9212 0.8311 -0.3837 -0.5133 -1.0143 0.4068 0.9976 'X-RAY DIFFRACTION' 7 ? refined 11.6882 -37.4756 18.4298 0.3490 0.4196 0.2380 -0.0147 -0.0015 -0.0111 5.4111 4.6261 0.1114 -0.8237 0.7128 0.7499 -0.0485 0.2383 0.4599 -0.0842 -0.0478 -0.3241 -0.1271 -0.0703 0.0441 'X-RAY DIFFRACTION' 8 ? refined 21.6774 -45.2679 21.0763 0.3730 0.5034 0.5550 -0.0459 -0.0931 -0.0583 3.1407 9.5638 6.5569 1.8777 -4.4370 -2.9824 -0.3329 0.4755 -0.1605 -0.4058 0.3491 -0.4869 0.5995 -0.4893 0.4364 'X-RAY DIFFRACTION' 9 ? refined 46.8987 -27.8321 13.9091 0.5674 0.4332 0.6719 -0.0452 0.1428 -0.0272 7.3815 1.2607 6.8451 -0.6735 1.5583 2.6719 -0.6629 -0.4466 -1.2043 0.7610 0.7851 0.5299 1.3949 0.2143 -0.0682 'X-RAY DIFFRACTION' 10 ? refined 41.9146 -20.6731 16.8025 0.3340 0.3725 0.3917 -0.0203 -0.0844 0.0361 6.5782 6.8852 5.5295 -1.1274 -2.7499 2.6170 -0.2171 -0.4157 -0.6735 0.2638 0.2386 0.0931 0.4138 0.2367 -0.0391 'X-RAY DIFFRACTION' 11 ? refined 38.3977 -16.2633 6.3133 0.4484 0.4898 0.4105 -0.0007 -0.0610 -0.1369 5.3821 2.5646 1.7305 0.0637 0.4887 -0.9371 0.0237 0.6431 -0.4346 -0.4847 0.0290 0.2579 0.2672 0.0099 0.0064 'X-RAY DIFFRACTION' 12 ? refined 38.6100 -27.2779 3.1007 0.9790 0.7997 1.1441 -0.0873 -0.1939 -0.3038 5.7326 8.2910 8.1315 -0.1749 -3.0838 5.7052 0.5071 1.4035 -0.9924 -0.3280 -0.7790 0.4208 1.3424 -0.9978 0.2726 'X-RAY DIFFRACTION' 13 ? refined 37.9469 -14.9587 16.5448 0.3243 0.3931 0.4203 0.0153 0.0202 -0.0014 2.5858 4.8160 0.2704 0.4472 -0.8501 1.4459 0.0488 -0.1289 -0.0922 0.0135 -0.1171 0.7588 0.0838 -0.2649 0.0806 'X-RAY DIFFRACTION' 14 ? refined 48.9203 -24.6098 16.9464 0.5662 0.5297 0.6101 -0.0488 0.1195 0.0290 4.1980 4.6094 9.6396 3.4304 -2.7418 -5.5470 0.2950 -0.4573 -0.4572 0.9237 -0.2340 0.1923 -0.4850 -0.3683 -0.1337 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 3 through 14 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 15 through 38 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 39 through 53 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 54 through 96 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 97 through 113 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 114 through 134 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 135 through 162 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 163 through 176 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 2 through 14 ) ; 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 15 through 66 ) ; 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 67 through 110 ) ; 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 111 through 125 ) ; 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 126 through 158 ) ; 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 159 through 176 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B MET 1 ? B MET 2 6 1 Y 1 B GLN 117 ? B GLN 118 7 1 Y 1 B SER 118 ? B SER 119 8 1 Y 1 B ASN 119 ? B ASN 120 9 1 Y 1 B ARG 120 ? B ARG 121 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2AM P P N N 1 2AM O1P O N N 2 2AM O2P O N N 3 2AM O3P O N N 4 2AM "C5'" C N N 5 2AM "O5'" O N N 6 2AM "C4'" C N R 7 2AM "O4'" O N N 8 2AM "C3'" C N R 9 2AM "O3'" O N N 10 2AM "C2'" C N R 11 2AM "O2'" O N N 12 2AM "C1'" C N R 13 2AM N9 N Y N 14 2AM C8 C Y N 15 2AM N7 N Y N 16 2AM C5 C Y N 17 2AM C6 C Y N 18 2AM N6 N N N 19 2AM N1 N Y N 20 2AM C2 C Y N 21 2AM N3 N Y N 22 2AM C4 C Y N 23 2AM HOP2 H N N 24 2AM HOP3 H N N 25 2AM "H5'1" H N N 26 2AM "H5'2" H N N 27 2AM "HO5'" H N N 28 2AM "H4'" H N N 29 2AM "H3'" H N N 30 2AM "HO3'" H N N 31 2AM "H2'" H N N 32 2AM "H1'" H N N 33 2AM H8 H N N 34 2AM HN61 H N N 35 2AM HN62 H N N 36 2AM H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CL CL CL N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2AM P O1P doub N N 1 2AM P O2P sing N N 2 2AM P O3P sing N N 3 2AM P "O2'" sing N N 4 2AM O2P HOP2 sing N N 5 2AM O3P HOP3 sing N N 6 2AM "C5'" "O5'" sing N N 7 2AM "C5'" "C4'" sing N N 8 2AM "C5'" "H5'1" sing N N 9 2AM "C5'" "H5'2" sing N N 10 2AM "O5'" "HO5'" sing N N 11 2AM "C4'" "O4'" sing N N 12 2AM "C4'" "C3'" sing N N 13 2AM "C4'" "H4'" sing N N 14 2AM "O4'" "C1'" sing N N 15 2AM "C3'" "O3'" sing N N 16 2AM "C3'" "C2'" sing N N 17 2AM "C3'" "H3'" sing N N 18 2AM "O3'" "HO3'" sing N N 19 2AM "C2'" "O2'" sing N N 20 2AM "C2'" "C1'" sing N N 21 2AM "C2'" "H2'" sing N N 22 2AM "C1'" N9 sing N N 23 2AM "C1'" "H1'" sing N N 24 2AM N9 C8 sing Y N 25 2AM N9 C4 sing Y N 26 2AM C8 N7 doub Y N 27 2AM C8 H8 sing N N 28 2AM N7 C5 sing Y N 29 2AM C5 C6 sing Y N 30 2AM C5 C4 doub Y N 31 2AM C6 N6 sing N N 32 2AM C6 N1 doub Y N 33 2AM N6 HN61 sing N N 34 2AM N6 HN62 sing N N 35 2AM N1 C2 sing Y N 36 2AM C2 N3 doub Y N 37 2AM C2 H2 sing N N 38 2AM N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 GLN N CA sing N N 122 GLN N H sing N N 123 GLN N H2 sing N N 124 GLN CA C sing N N 125 GLN CA CB sing N N 126 GLN CA HA sing N N 127 GLN C O doub N N 128 GLN C OXT sing N N 129 GLN CB CG sing N N 130 GLN CB HB2 sing N N 131 GLN CB HB3 sing N N 132 GLN CG CD sing N N 133 GLN CG HG2 sing N N 134 GLN CG HG3 sing N N 135 GLN CD OE1 doub N N 136 GLN CD NE2 sing N N 137 GLN NE2 HE21 sing N N 138 GLN NE2 HE22 sing N N 139 GLN OXT HXT sing N N 140 GLU N CA sing N N 141 GLU N H sing N N 142 GLU N H2 sing N N 143 GLU CA C sing N N 144 GLU CA CB sing N N 145 GLU CA HA sing N N 146 GLU C O doub N N 147 GLU C OXT sing N N 148 GLU CB CG sing N N 149 GLU CB HB2 sing N N 150 GLU CB HB3 sing N N 151 GLU CG CD sing N N 152 GLU CG HG2 sing N N 153 GLU CG HG3 sing N N 154 GLU CD OE1 doub N N 155 GLU CD OE2 sing N N 156 GLU OE2 HE2 sing N N 157 GLU OXT HXT sing N N 158 GLY N CA sing N N 159 GLY N H sing N N 160 GLY N H2 sing N N 161 GLY CA C sing N N 162 GLY CA HA2 sing N N 163 GLY CA HA3 sing N N 164 GLY C O doub N N 165 GLY C OXT sing N N 166 GLY OXT HXT sing N N 167 HIS N CA sing N N 168 HIS N H sing N N 169 HIS N H2 sing N N 170 HIS CA C sing N N 171 HIS CA CB sing N N 172 HIS CA HA sing N N 173 HIS C O doub N N 174 HIS C OXT sing N N 175 HIS CB CG sing N N 176 HIS CB HB2 sing N N 177 HIS CB HB3 sing N N 178 HIS CG ND1 sing Y N 179 HIS CG CD2 doub Y N 180 HIS ND1 CE1 doub Y N 181 HIS ND1 HD1 sing N N 182 HIS CD2 NE2 sing Y N 183 HIS CD2 HD2 sing N N 184 HIS CE1 NE2 sing Y N 185 HIS CE1 HE1 sing N N 186 HIS NE2 HE2 sing N N 187 HIS OXT HXT sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 ILE N CA sing N N 191 ILE N H sing N N 192 ILE N H2 sing N N 193 ILE CA C sing N N 194 ILE CA CB sing N N 195 ILE CA HA sing N N 196 ILE C O doub N N 197 ILE C OXT sing N N 198 ILE CB CG1 sing N N 199 ILE CB CG2 sing N N 200 ILE CB HB sing N N 201 ILE CG1 CD1 sing N N 202 ILE CG1 HG12 sing N N 203 ILE CG1 HG13 sing N N 204 ILE CG2 HG21 sing N N 205 ILE CG2 HG22 sing N N 206 ILE CG2 HG23 sing N N 207 ILE CD1 HD11 sing N N 208 ILE CD1 HD12 sing N N 209 ILE CD1 HD13 sing N N 210 ILE OXT HXT sing N N 211 LEU N CA sing N N 212 LEU N H sing N N 213 LEU N H2 sing N N 214 LEU CA C sing N N 215 LEU CA CB sing N N 216 LEU CA HA sing N N 217 LEU C O doub N N 218 LEU C OXT sing N N 219 LEU CB CG sing N N 220 LEU CB HB2 sing N N 221 LEU CB HB3 sing N N 222 LEU CG CD1 sing N N 223 LEU CG CD2 sing N N 224 LEU CG HG sing N N 225 LEU CD1 HD11 sing N N 226 LEU CD1 HD12 sing N N 227 LEU CD1 HD13 sing N N 228 LEU CD2 HD21 sing N N 229 LEU CD2 HD22 sing N N 230 LEU CD2 HD23 sing N N 231 LEU OXT HXT sing N N 232 LYS N CA sing N N 233 LYS N H sing N N 234 LYS N H2 sing N N 235 LYS CA C sing N N 236 LYS CA CB sing N N 237 LYS CA HA sing N N 238 LYS C O doub N N 239 LYS C OXT sing N N 240 LYS CB CG sing N N 241 LYS CB HB2 sing N N 242 LYS CB HB3 sing N N 243 LYS CG CD sing N N 244 LYS CG HG2 sing N N 245 LYS CG HG3 sing N N 246 LYS CD CE sing N N 247 LYS CD HD2 sing N N 248 LYS CD HD3 sing N N 249 LYS CE NZ sing N N 250 LYS CE HE2 sing N N 251 LYS CE HE3 sing N N 252 LYS NZ HZ1 sing N N 253 LYS NZ HZ2 sing N N 254 LYS NZ HZ3 sing N N 255 LYS OXT HXT sing N N 256 MET N CA sing N N 257 MET N H sing N N 258 MET N H2 sing N N 259 MET CA C sing N N 260 MET CA CB sing N N 261 MET CA HA sing N N 262 MET C O doub N N 263 MET C OXT sing N N 264 MET CB CG sing N N 265 MET CB HB2 sing N N 266 MET CB HB3 sing N N 267 MET CG SD sing N N 268 MET CG HG2 sing N N 269 MET CG HG3 sing N N 270 MET SD CE sing N N 271 MET CE HE1 sing N N 272 MET CE HE2 sing N N 273 MET CE HE3 sing N N 274 MET OXT HXT sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5LDI _pdbx_initial_refinement_model.details 'PDBid: 5ldi' # _atom_sites.entry_id 5LDM _atom_sites.fract_transf_matrix[1][1] 0.009253 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013767 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O P S # loop_