HEADER HYDROLASE 29-JUN-16 5LE1 TITLE VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH 2-(2-CHLORO-6- TITLE 2 FLUOROBENZYL)-3-OXOISOINDOLINE-4-CARBOXYLIC ACID (COMPOUND 16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-LACTAMASE VIM-2,CLASS B CARBAPENEMASE VIM-2,METALLO COMPND 5 BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE, COMPND 6 BETA LACTAMASE,METALLO-BETA-LACTAMASE VIM-2,VIM-2 METALLO-BETA- COMPND 7 LACTAMASE,VIM-2 PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: 2-(2-CHLORO-6-FLUOROBENZYL)-3-OXOISOINDOLINE-4- COMPND 10 CARBOXYLIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: OPINF VECTOR BASED ON PTRIEX VECTOR KEYWDS METALLO-BETA-LACTAMASE, INHIBITOR, COMPLEX, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 10-JAN-24 5LE1 1 REMARK REVDAT 2 24-MAY-17 5LE1 1 JRNL REVDAT 1 15-FEB-17 5LE1 0 JRNL AUTH G.B.LI,M.I.ABBOUD,J.BREM,H.SOMEYA,C.T.LOHANS,S.Y.YANG, JRNL AUTH 2 J.SPENCER,D.W.WAREHAM,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL NMR-FILTERED VIRTUAL SCREENING LEADS TO NON-METAL CHELATING JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITORS. JRNL REF CHEM SCI V. 8 928 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 28451231 JRNL DOI 10.1039/C6SC04524C REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0340 - 3.3728 1.00 3936 153 0.1355 0.1446 REMARK 3 2 3.3728 - 2.6773 1.00 3777 145 0.1246 0.1383 REMARK 3 3 2.6773 - 2.3389 1.00 3737 146 0.1197 0.1634 REMARK 3 4 2.3389 - 2.1250 1.00 3728 144 0.1231 0.1610 REMARK 3 5 2.1250 - 1.9727 1.00 3688 142 0.1237 0.1441 REMARK 3 6 1.9727 - 1.8564 1.00 3697 143 0.1282 0.1320 REMARK 3 7 1.8564 - 1.7635 1.00 3674 142 0.1239 0.1530 REMARK 3 8 1.7635 - 1.6867 1.00 3668 142 0.1223 0.1476 REMARK 3 9 1.6867 - 1.6218 1.00 3686 143 0.1338 0.1644 REMARK 3 10 1.6218 - 1.5658 1.00 3647 141 0.1386 0.1696 REMARK 3 11 1.5658 - 1.5168 1.00 3648 141 0.1557 0.1675 REMARK 3 12 1.5168 - 1.4735 1.00 3677 142 0.1642 0.2000 REMARK 3 13 1.4735 - 1.4347 1.00 3646 141 0.1888 0.2317 REMARK 3 14 1.4347 - 1.3997 0.96 3490 135 0.2124 0.2130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1877 REMARK 3 ANGLE : 0.948 2565 REMARK 3 CHIRALITY : 0.076 288 REMARK 3 PLANARITY : 0.007 339 REMARK 3 DIHEDRAL : 17.385 654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.8265 83.8892 12.2977 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.0773 REMARK 3 T33: 0.0854 T12: -0.0046 REMARK 3 T13: -0.0118 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.0387 L22: 1.0254 REMARK 3 L33: 3.2884 L12: -0.2069 REMARK 3 L13: -1.2883 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.1657 S13: 0.1009 REMARK 3 S21: -0.1053 S22: -0.0022 S23: 0.0255 REMARK 3 S31: 0.0135 S32: -0.1207 S33: 0.0015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.4104 91.5999 16.4549 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0949 REMARK 3 T33: 0.1259 T12: -0.0136 REMARK 3 T13: 0.0049 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.3930 L22: 8.0231 REMARK 3 L33: 4.9774 L12: -4.0957 REMARK 3 L13: -1.8642 L23: 1.6810 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: 0.1651 S13: 0.3772 REMARK 3 S21: -0.1270 S22: -0.0305 S23: -0.0361 REMARK 3 S31: -0.2239 S32: -0.1545 S33: -0.1422 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.6412 78.1667 24.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.1039 REMARK 3 T33: 0.0829 T12: 0.0034 REMARK 3 T13: -0.0150 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.9458 L22: 3.5310 REMARK 3 L33: 1.3770 L12: -0.1187 REMARK 3 L13: -0.5310 L23: 0.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.1029 S13: -0.0039 REMARK 3 S21: 0.0493 S22: -0.0266 S23: -0.1802 REMARK 3 S31: 0.0727 S32: 0.1098 S33: 0.0156 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.5823 70.7034 28.2001 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1132 REMARK 3 T33: 0.1427 T12: 0.0052 REMARK 3 T13: -0.0085 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 4.2179 L22: 1.0739 REMARK 3 L33: 1.2895 L12: 1.7291 REMARK 3 L13: 1.7707 L23: 1.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.2395 S12: -0.4504 S13: -0.2746 REMARK 3 S21: 0.1667 S22: -0.2910 S23: -0.1954 REMARK 3 S31: 0.2194 S32: -0.0863 S33: 0.0661 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.8686 69.7589 16.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.0818 REMARK 3 T33: 0.0974 T12: -0.0362 REMARK 3 T13: -0.0106 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6654 L22: 2.3811 REMARK 3 L33: 2.2483 L12: -0.0107 REMARK 3 L13: -0.3204 L23: 0.4776 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.1034 S13: -0.0919 REMARK 3 S21: -0.1823 S22: 0.0325 S23: 0.0408 REMARK 3 S31: 0.2009 S32: -0.0885 S33: 0.0226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.8180 60.6240 16.2731 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.1352 REMARK 3 T33: 0.1535 T12: -0.0674 REMARK 3 T13: -0.0209 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.1583 L22: 6.7988 REMARK 3 L33: 5.3031 L12: -3.7592 REMARK 3 L13: -4.2340 L23: 2.2752 REMARK 3 S TENSOR REMARK 3 S11: -0.2563 S12: 0.0500 S13: -0.5040 REMARK 3 S21: 0.0351 S22: 0.0740 S23: 0.3786 REMARK 3 S31: 0.5234 S32: -0.1933 S33: 0.2006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.0308 74.6404 11.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.1595 REMARK 3 T33: 0.1415 T12: -0.0287 REMARK 3 T13: -0.0489 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.0312 L22: 3.8410 REMARK 3 L33: 2.9967 L12: 0.3130 REMARK 3 L13: 0.1814 L23: -1.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: 0.3101 S13: 0.2242 REMARK 3 S21: -0.1418 S22: 0.1612 S23: 0.4967 REMARK 3 S31: 0.0689 S32: -0.5100 S33: -0.1289 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.1708 62.2451 6.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.3612 T22: 0.2070 REMARK 3 T33: 0.1773 T12: -0.0802 REMARK 3 T13: -0.0313 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 9.0118 L22: 6.5683 REMARK 3 L33: 5.7636 L12: -4.7408 REMARK 3 L13: -3.0815 L23: 2.7195 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.4848 S13: -0.7288 REMARK 3 S21: -0.3365 S22: -0.1044 S23: 0.3895 REMARK 3 S31: 0.6593 S32: -0.0803 S33: 0.1364 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 4C1D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE, 24.5% (V/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 1 MM TRIS(2-CARBOXYETHYL)PHOSPHINE, 5 REMARK 280 MM 2-(2-CHLORO-6-FLUOROBENZYL)-3-OXOISOINDOLINE-4-CARBOXYLIC REMARK 280 ACID, 16 MG/ML PROTEIN, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.58550 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.95550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.58550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.95550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 900 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 916 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 938 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 31 N CA REMARK 470 GLU A 156 CD OE2 REMARK 470 ARG A 166 CD NE CZ NH1 NH2 REMARK 470 LYS A 250 CD CE NZ REMARK 470 THR A 260 CG2 REMARK 470 ASN A 261 O CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 805 O HOH A 863 1.88 REMARK 500 O HOH A 608 O HOH A 648 1.88 REMARK 500 O HOH A 817 O HOH A 828 1.90 REMARK 500 O HOH A 677 O HOH A 863 1.90 REMARK 500 O HOH A 620 O HOH A 904 1.98 REMARK 500 O HOH A 608 O HOH A 877 2.03 REMARK 500 O HOH A 613 O HOH A 728 2.03 REMARK 500 O HOH A 786 O HOH A 906 2.06 REMARK 500 O HOH A 673 O HOH A 882 2.06 REMARK 500 O HOH A 823 O HOH A 828 2.06 REMARK 500 O HOH A 856 O HOH A 910 2.07 REMARK 500 O HOH A 632 O HOH A 831 2.09 REMARK 500 O HOH A 704 O HOH A 855 2.10 REMARK 500 O HOH A 707 O HOH A 906 2.15 REMARK 500 O HOH A 821 O HOH A 858 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 877 O HOH A 904 3575 2.02 REMARK 500 O HOH A 852 O HOH A 906 3585 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 147.80 72.93 REMARK 500 TRP A 87 67.59 68.88 REMARK 500 ALA A 178 -105.56 -152.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 937 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 98.3 REMARK 620 3 HIS A 179 NE2 102.5 106.0 REMARK 620 4 HOH A 730 O 113.3 119.5 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 102.8 REMARK 620 3 HIS A 240 NE2 82.3 103.2 REMARK 620 4 HOH A 621 O 161.0 95.8 90.2 REMARK 620 5 HOH A 730 O 82.7 118.1 138.2 91.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6UW A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 DBREF 5LE1 A 1 266 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU HET ZN A 501 1 HET ZN A 502 1 HET 6UW A 503 22 HET FMT A 504 3 HET GOL A 505 6 HET GOL A 506 6 HETNAM ZN ZINC ION HETNAM 6UW 2-[(2-CHLORANYL-6-FLUORANYL-PHENYL)METHYL]-3- HETNAM 2 6UW OXIDANYLIDENE-1~{H}-ISOINDOLE-4-CARBOXYLIC ACID HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 6UW C16 H11 CL F N O3 FORMUL 5 FMT C H2 O2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *338(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N THR A 108 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 502 1555 1555 2.07 LINK ND1 HIS A 116 ZN ZN A 502 1555 1555 2.04 LINK OD2 ASP A 118 ZN ZN A 501 1555 1555 2.30 LINK NE2 HIS A 179 ZN ZN A 502 1555 1555 2.03 LINK SG CYS A 198 ZN ZN A 501 1555 1555 2.32 LINK NE2 HIS A 240 ZN ZN A 501 1555 1555 2.09 LINK ZN ZN A 501 O HOH A 621 1555 1555 2.29 LINK ZN ZN A 501 O HOH A 730 1555 1555 1.93 LINK ZN ZN A 502 O HOH A 730 1555 1555 1.92 SITE 1 AC1 6 ASP A 118 CYS A 198 HIS A 240 ZN A 502 SITE 2 AC1 6 HOH A 621 HOH A 730 SITE 1 AC2 5 HIS A 114 HIS A 116 HIS A 179 ZN A 501 SITE 2 AC2 5 HOH A 730 SITE 1 AC3 15 PHE A 62 TYR A 67 TRP A 87 HIS A 116 SITE 2 AC3 15 ASP A 117 ASP A 118 HIS A 179 ARG A 205 SITE 3 AC3 15 GLY A 209 ASN A 210 HIS A 240 HOH A 621 SITE 4 AC3 15 HOH A 649 HOH A 654 HOH A 721 SITE 1 AC4 6 SER A 138 ARG A 141 ARG A 225 GLN A 228 SITE 2 AC4 6 HOH A 710 HOH A 795 SITE 1 AC5 5 TYR A 67 GLU A 202 ARG A 205 HIS A 240 SITE 2 AC5 5 HOH A 685 SITE 1 AC6 8 ASP A 51 GLY A 52 VAL A 74 ARG A 75 SITE 2 AC6 8 SER A 190 HOH A 613 HOH A 698 HOH A 728 CRYST1 45.171 60.720 97.911 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010213 0.00000