HEADER CELL ADHESION 30-JUN-16 5LF2 TITLE CRYSTAL STRUCTURE OF LAMININ BETA2 LE5-LF-LE6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT BETA-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 523-833; COMPND 5 SYNONYM: LAMININ CHAIN B3,LAMININ-11 SUBUNIT BETA,LAMININ-14 SUBUNIT COMPND 6 BETA,LAMININ-15 SUBUNIT BETA,LAMININ-3 SUBUNIT BETA,LAMININ-4 SUBUNIT COMPND 7 BETA,LAMININ-7 SUBUNIT BETA,LAMININ-9 SUBUNIT BETA,S-LAMININ SUBUNIT COMPND 8 BETA,S-LAM BETA; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: SEQUENCE MISMATCH WITH UNIPROT P15800 AT RESIDUE 545 COMPND 11 (ARGININE IN THE CDNA USED TO MAKE THE EXPRESSION CONSTRUCT) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: LAMB2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-F; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCEP-PU KEYWDS EXTRACELLULAR MATRIX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.PULIDO,E.HOHENESTER REVDAT 2 08-MAR-17 5LF2 1 JRNL REVDAT 1 27-JUL-16 5LF2 0 JRNL AUTH D.PULIDO,D.C.BRIGGS,J.HUA,E.HOHENESTER JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE LAMININ BETA 2 SHORT ARM JRNL TITL 2 REVEALS HOW THE LF DOMAIN IS INSERTED INTO A REGULAR ARRAY JRNL TITL 3 OF LE DOMAINS. JRNL REF MATRIX BIOL. V.7-58 204 2017 JRNL REFN ISSN 1569-1802 JRNL PMID 27425256 JRNL DOI 10.1016/J.MATBIO.2016.06.006 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 65000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.9155 - 5.2603 0.98 2762 161 0.1661 0.2030 REMARK 3 2 5.2603 - 4.1755 0.99 2763 139 0.1381 0.1521 REMARK 3 3 4.1755 - 3.6477 0.98 2660 128 0.1582 0.1731 REMARK 3 4 3.6477 - 3.3143 0.99 2713 159 0.1812 0.2288 REMARK 3 5 3.3143 - 3.0767 0.99 2677 144 0.1830 0.2256 REMARK 3 6 3.0767 - 2.8953 0.99 2727 135 0.1915 0.2155 REMARK 3 7 2.8953 - 2.7503 0.98 2654 129 0.1727 0.2103 REMARK 3 8 2.7503 - 2.6306 0.99 2733 120 0.1832 0.2292 REMARK 3 9 2.6306 - 2.5293 0.99 2698 143 0.1758 0.2276 REMARK 3 10 2.5293 - 2.4420 0.99 2683 144 0.1785 0.2091 REMARK 3 11 2.4420 - 2.3657 1.00 2670 184 0.1804 0.2239 REMARK 3 12 2.3657 - 2.2980 0.99 2647 136 0.1832 0.2267 REMARK 3 13 2.2980 - 2.2375 1.00 2711 150 0.1871 0.2090 REMARK 3 14 2.2375 - 2.1830 0.99 2690 126 0.1917 0.2240 REMARK 3 15 2.1830 - 2.1333 0.98 2629 138 0.2015 0.2508 REMARK 3 16 2.1333 - 2.0879 0.98 2683 130 0.2044 0.2429 REMARK 3 17 2.0879 - 2.0462 0.99 2648 130 0.2047 0.2060 REMARK 3 18 2.0462 - 2.0075 0.99 2697 145 0.2180 0.2408 REMARK 3 19 2.0075 - 1.9717 0.99 2662 127 0.2301 0.2669 REMARK 3 20 1.9717 - 1.9383 0.99 2663 169 0.2532 0.3010 REMARK 3 21 1.9383 - 1.9070 0.99 2633 142 0.2775 0.3157 REMARK 3 22 1.9070 - 1.8777 0.99 2690 148 0.2914 0.3416 REMARK 3 23 1.8777 - 1.8500 0.99 2656 124 0.3088 0.3265 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4692 REMARK 3 ANGLE : 1.280 6356 REMARK 3 CHIRALITY : 0.065 692 REMARK 3 PLANARITY : 0.009 849 REMARK 3 DIHEDRAL : 12.763 1737 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.3294 43.5640 31.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.2082 REMARK 3 T33: 0.2953 T12: -0.0049 REMARK 3 T13: -0.0615 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.6293 L22: 0.1560 REMARK 3 L33: 1.5242 L12: -0.0361 REMARK 3 L13: -0.3948 L23: -0.1501 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.0051 S13: 0.0397 REMARK 3 S21: -0.0062 S22: -0.0196 S23: -0.0232 REMARK 3 S31: 0.0283 S32: -0.0208 S33: 0.0318 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 62.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONDITION H4 OF THE MORPHEUS SCREEN REMARK 280 (MOLECULAR DIMENSIONS), PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.16000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.16000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1197 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 519 REMARK 465 ALA A 520 REMARK 465 LEU A 521 REMARK 465 ALA A 522 REMARK 465 ALA A 705 REMARK 465 HIS A 706 REMARK 465 PRO A 707 REMARK 465 GLU A 708 REMARK 465 THR A 709 REMARK 465 PRO A 710 REMARK 465 TYR A 711 REMARK 465 SER A 712 REMARK 465 GLY A 713 REMARK 465 GLY B 519 REMARK 465 ALA B 520 REMARK 465 LEU B 521 REMARK 465 ALA B 522 REMARK 465 ARG B 523 REMARK 465 ALA B 705 REMARK 465 HIS B 706 REMARK 465 PRO B 707 REMARK 465 GLU B 708 REMARK 465 THR B 709 REMARK 465 PRO B 710 REMARK 465 TYR B 711 REMARK 465 SER B 712 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 523 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 526 CG OD1 OD2 REMARK 470 GLN A 536 CG CD OE1 NE2 REMARK 470 ASP A 538 CG OD1 OD2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 470 ARG A 545 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 578 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 581 CG1 CG2 REMARK 470 ASN A 591 CG OD1 ND2 REMARK 470 ARG A 592 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 GLU A 766 CG CD OE1 OE2 REMARK 470 ARG B 545 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 592 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 593 CG CD OE1 OE2 REMARK 470 ARG B 704 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1244 O HOH B 1210 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 539 -148.20 60.94 REMARK 500 GLU A 593 -164.48 58.99 REMARK 500 ASN A 781 63.40 61.98 REMARK 500 MET B 622 -179.21 -170.56 REMARK 500 ASN B 781 70.86 56.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1215 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1216 DISTANCE = 7.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 573 OE1 REMARK 620 2 GLU A 575 OE1 91.0 REMARK 620 3 GLU A 575 OE2 91.7 51.3 REMARK 620 4 THR A 598 O 81.4 130.9 80.4 REMARK 620 5 GLY A 601 O 171.2 84.3 79.5 96.0 REMARK 620 6 ASP A 719 O 80.5 75.7 126.3 148.0 105.4 REMARK 620 7 ASP A 719 OD1 100.5 145.8 157.6 82.9 87.5 74.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 573 OE1 REMARK 620 2 GLU B 575 OE1 92.7 REMARK 620 3 GLU B 575 OE2 92.2 52.1 REMARK 620 4 THR B 598 O 79.6 132.8 81.4 REMARK 620 5 GLY B 601 O 168.9 86.4 78.5 92.9 REMARK 620 6 ASP B 719 O 85.3 74.3 126.2 149.1 105.1 REMARK 620 7 ASP B 719 OD1 102.9 142.7 156.6 83.8 84.2 73.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 902 DBREF 5LF2 A 523 833 UNP P15800 LAMB2_RAT 523 833 DBREF 5LF2 B 523 833 UNP P15800 LAMB2_RAT 523 833 SEQADV 5LF2 GLY A 519 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ALA A 520 UNP P15800 EXPRESSION TAG SEQADV 5LF2 LEU A 521 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ALA A 522 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ARG A 545 UNP P15800 PRO 545 CONFLICT SEQADV 5LF2 GLY B 519 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ALA B 520 UNP P15800 EXPRESSION TAG SEQADV 5LF2 LEU B 521 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ALA B 522 UNP P15800 EXPRESSION TAG SEQADV 5LF2 ARG B 545 UNP P15800 PRO 545 CONFLICT SEQRES 1 A 315 GLY ALA LEU ALA ARG PRO CYS ASP CYS ASP VAL GLY GLY SEQRES 2 A 315 ALA LEU ASP PRO GLN CYS ASP GLU ALA THR GLY GLN CYS SEQRES 3 A 315 ARG CYS ARG PRO HIS MET ILE GLY ARG ARG CYS GLU GLN SEQRES 4 A 315 VAL GLN PRO GLY TYR PHE ARG PRO PHE LEU ASP HIS LEU SEQRES 5 A 315 THR TRP GLU ALA GLU GLY ALA HIS GLY GLN VAL LEU GLU SEQRES 6 A 315 VAL VAL GLU ARG LEU VAL THR ASN ARG GLU THR PRO SER SEQRES 7 A 315 TRP THR GLY VAL GLY PHE VAL ARG LEU ARG GLU GLY GLN SEQRES 8 A 315 GLU VAL GLU PHE LEU VAL THR SER LEU PRO ARG ALA MET SEQRES 9 A 315 ASP TYR ASP LEU LEU LEU ARG TRP GLU PRO GLN VAL PRO SEQRES 10 A 315 GLU GLN TRP ALA GLU LEU GLU LEU VAL VAL GLN ARG PRO SEQRES 11 A 315 GLY PRO VAL SER ALA HIS SER PRO CYS GLY HIS VAL LEU SEQRES 12 A 315 PRO ARG ASP ASP ARG ILE GLN GLY MET LEU HIS PRO ASN SEQRES 13 A 315 THR ARG VAL LEU VAL PHE PRO ARG PRO VAL CYS LEU GLU SEQRES 14 A 315 PRO GLY LEU SER TYR LYS LEU LYS LEU LYS LEU THR GLY SEQRES 15 A 315 THR GLY GLY ARG ALA HIS PRO GLU THR PRO TYR SER GLY SEQRES 16 A 315 SER GLY ILE LEU ILE ASP SER LEU VAL LEU GLN PRO HIS SEQRES 17 A 315 VAL LEU MET LEU GLU MET PHE SER GLY GLY ASP ALA ALA SEQRES 18 A 315 ALA LEU GLU ARG ARG THR THR PHE GLU ARG TYR ARG CYS SEQRES 19 A 315 HIS GLU GLU GLY LEU MET PRO SER LYS THR PRO LEU SER SEQRES 20 A 315 GLU ALA CYS VAL PRO LEU LEU ILE SER ALA SER SER LEU SEQRES 21 A 315 VAL TYR ASN GLY ALA LEU PRO CYS GLN CYS ASP PRO GLN SEQRES 22 A 315 GLY SER LEU SER SER GLU CYS ASN PRO HIS GLY GLY GLN SEQRES 23 A 315 CYS ARG CYS LYS PRO GLY VAL VAL GLY ARG ARG CYS ASP SEQRES 24 A 315 ALA CYS ALA THR GLY TYR TYR GLY PHE GLY PRO ALA GLY SEQRES 25 A 315 CYS GLN ALA SEQRES 1 B 315 GLY ALA LEU ALA ARG PRO CYS ASP CYS ASP VAL GLY GLY SEQRES 2 B 315 ALA LEU ASP PRO GLN CYS ASP GLU ALA THR GLY GLN CYS SEQRES 3 B 315 ARG CYS ARG PRO HIS MET ILE GLY ARG ARG CYS GLU GLN SEQRES 4 B 315 VAL GLN PRO GLY TYR PHE ARG PRO PHE LEU ASP HIS LEU SEQRES 5 B 315 THR TRP GLU ALA GLU GLY ALA HIS GLY GLN VAL LEU GLU SEQRES 6 B 315 VAL VAL GLU ARG LEU VAL THR ASN ARG GLU THR PRO SER SEQRES 7 B 315 TRP THR GLY VAL GLY PHE VAL ARG LEU ARG GLU GLY GLN SEQRES 8 B 315 GLU VAL GLU PHE LEU VAL THR SER LEU PRO ARG ALA MET SEQRES 9 B 315 ASP TYR ASP LEU LEU LEU ARG TRP GLU PRO GLN VAL PRO SEQRES 10 B 315 GLU GLN TRP ALA GLU LEU GLU LEU VAL VAL GLN ARG PRO SEQRES 11 B 315 GLY PRO VAL SER ALA HIS SER PRO CYS GLY HIS VAL LEU SEQRES 12 B 315 PRO ARG ASP ASP ARG ILE GLN GLY MET LEU HIS PRO ASN SEQRES 13 B 315 THR ARG VAL LEU VAL PHE PRO ARG PRO VAL CYS LEU GLU SEQRES 14 B 315 PRO GLY LEU SER TYR LYS LEU LYS LEU LYS LEU THR GLY SEQRES 15 B 315 THR GLY GLY ARG ALA HIS PRO GLU THR PRO TYR SER GLY SEQRES 16 B 315 SER GLY ILE LEU ILE ASP SER LEU VAL LEU GLN PRO HIS SEQRES 17 B 315 VAL LEU MET LEU GLU MET PHE SER GLY GLY ASP ALA ALA SEQRES 18 B 315 ALA LEU GLU ARG ARG THR THR PHE GLU ARG TYR ARG CYS SEQRES 19 B 315 HIS GLU GLU GLY LEU MET PRO SER LYS THR PRO LEU SER SEQRES 20 B 315 GLU ALA CYS VAL PRO LEU LEU ILE SER ALA SER SER LEU SEQRES 21 B 315 VAL TYR ASN GLY ALA LEU PRO CYS GLN CYS ASP PRO GLN SEQRES 22 B 315 GLY SER LEU SER SER GLU CYS ASN PRO HIS GLY GLY GLN SEQRES 23 B 315 CYS ARG CYS LYS PRO GLY VAL VAL GLY ARG ARG CYS ASP SEQRES 24 B 315 ALA CYS ALA THR GLY TYR TYR GLY PHE GLY PRO ALA GLY SEQRES 25 B 315 CYS GLN ALA HET CA A1001 1 HET CL A1002 1 HET CA B 901 1 HET CL B 902 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *435(H2 O) HELIX 1 AA1 GLU A 575 ALA A 577 5 3 HELIX 2 AA2 LEU A 661 ASP A 664 5 4 HELIX 3 AA3 VAL A 727 MET A 729 5 3 HELIX 4 AA4 LEU A 730 GLY A 735 1 6 HELIX 5 AA5 ASP A 737 TYR A 750 1 14 HELIX 6 AA6 ARG A 751 LEU A 757 5 7 HELIX 7 AA7 ALA A 767 ASN A 781 1 15 HELIX 8 AA8 GLU B 575 ALA B 577 5 3 HELIX 9 AA9 LEU B 661 ASP B 664 5 4 HELIX 10 AB1 VAL B 727 MET B 729 5 3 HELIX 11 AB2 LEU B 730 GLY B 735 1 6 HELIX 12 AB3 ASP B 737 TYR B 750 1 14 HELIX 13 AB4 ARG B 751 LEU B 757 5 7 HELIX 14 AB5 ALA B 767 ASN B 781 1 15 SHEET 1 AA1 2 MET A 550 ILE A 551 0 SHEET 2 AA1 2 GLN A 557 VAL A 558 -1 O GLN A 557 N ILE A 551 SHEET 1 AA2 2 TYR A 562 PHE A 563 0 SHEET 2 AA2 2 LEU A 784 PRO A 785 -1 O LEU A 784 N PHE A 563 SHEET 1 AA3 4 THR A 571 GLU A 573 0 SHEET 2 AA3 4 ILE A 716 PRO A 725 -1 O LEU A 721 N TRP A 572 SHEET 3 AA3 4 MET A 622 GLU A 631 -1 N ASP A 625 O GLN A 724 SHEET 4 AA3 4 VAL A 677 VAL A 679 -1 O LEU A 678 N LEU A 628 SHEET 1 AA4 5 GLU A 583 GLU A 586 0 SHEET 2 AA4 5 GLY A 601 LEU A 605 -1 O PHE A 602 N VAL A 585 SHEET 3 AA4 5 ILE A 716 PRO A 725 -1 O ILE A 716 N LEU A 605 SHEET 4 AA4 5 MET A 622 GLU A 631 -1 N ASP A 625 O GLN A 724 SHEET 5 AA4 5 VAL A 684 LEU A 686 -1 O VAL A 684 N TYR A 624 SHEET 1 AA5 4 GLU A 610 VAL A 615 0 SHEET 2 AA5 4 TYR A 692 GLY A 702 -1 O LEU A 696 N VAL A 611 SHEET 3 AA5 4 TRP A 638 GLN A 646 -1 N VAL A 644 O LYS A 695 SHEET 4 AA5 4 ARG A 666 LEU A 671 -1 O ILE A 667 N LEU A 643 SHEET 1 AA6 2 VAL A 811 VAL A 812 0 SHEET 2 AA6 2 ALA A 818 CYS A 819 -1 O ALA A 818 N VAL A 812 SHEET 1 AA7 2 MET B 550 ILE B 551 0 SHEET 2 AA7 2 GLN B 557 VAL B 558 -1 O GLN B 557 N ILE B 551 SHEET 1 AA8 2 TYR B 562 PHE B 563 0 SHEET 2 AA8 2 LEU B 784 PRO B 785 -1 O LEU B 784 N PHE B 563 SHEET 1 AA9 4 THR B 571 GLU B 573 0 SHEET 2 AA9 4 ILE B 716 PRO B 725 -1 O LEU B 721 N TRP B 572 SHEET 3 AA9 4 MET B 622 GLU B 631 -1 N ASP B 625 O GLN B 724 SHEET 4 AA9 4 VAL B 677 VAL B 679 -1 O LEU B 678 N LEU B 628 SHEET 1 AB1 5 VAL B 584 GLU B 586 0 SHEET 2 AB1 5 GLY B 601 LEU B 605 -1 O PHE B 602 N VAL B 585 SHEET 3 AB1 5 ILE B 716 PRO B 725 -1 O ILE B 716 N LEU B 605 SHEET 4 AB1 5 MET B 622 GLU B 631 -1 N ASP B 625 O GLN B 724 SHEET 5 AB1 5 VAL B 684 LEU B 686 -1 O VAL B 684 N TYR B 624 SHEET 1 AB2 4 GLU B 610 VAL B 615 0 SHEET 2 AB2 4 TYR B 692 GLY B 702 -1 O TYR B 692 N VAL B 615 SHEET 3 AB2 4 TRP B 638 GLN B 646 -1 N GLU B 640 O GLY B 700 SHEET 4 AB2 4 ARG B 666 LEU B 671 -1 O ILE B 667 N LEU B 643 SHEET 1 AB3 2 VAL B 811 VAL B 812 0 SHEET 2 AB3 2 ALA B 818 CYS B 819 -1 O ALA B 818 N VAL B 812 SSBOND 1 CYS A 525 CYS A 537 1555 1555 2.03 SSBOND 2 CYS A 527 CYS A 544 1555 1555 2.04 SSBOND 3 CYS A 546 CYS A 555 1555 1555 2.05 SSBOND 4 CYS A 657 CYS A 685 1555 1555 2.11 SSBOND 5 CYS A 752 CYS A 768 1555 1555 2.07 SSBOND 6 CYS A 786 CYS A 798 1555 1555 2.07 SSBOND 7 CYS A 788 CYS A 805 1555 1555 2.06 SSBOND 8 CYS A 807 CYS A 816 1555 1555 2.06 SSBOND 9 CYS A 819 CYS A 831 1555 1555 2.11 SSBOND 10 CYS B 525 CYS B 537 1555 1555 2.05 SSBOND 11 CYS B 527 CYS B 544 1555 1555 2.03 SSBOND 12 CYS B 546 CYS B 555 1555 1555 2.05 SSBOND 13 CYS B 657 CYS B 685 1555 1555 2.11 SSBOND 14 CYS B 752 CYS B 768 1555 1555 2.10 SSBOND 15 CYS B 786 CYS B 798 1555 1555 2.06 SSBOND 16 CYS B 788 CYS B 805 1555 1555 2.06 SSBOND 17 CYS B 807 CYS B 816 1555 1555 2.07 SSBOND 18 CYS B 819 CYS B 831 1555 1555 2.08 LINK OE1 GLU A 573 CA CA A1001 1555 1555 2.37 LINK OE1 GLU A 575 CA CA A1001 1555 1555 2.56 LINK OE2 GLU A 575 CA CA A1001 1555 1555 2.52 LINK O THR A 598 CA CA A1001 1555 1555 2.42 LINK O GLY A 601 CA CA A1001 1555 1555 2.36 LINK O ASP A 719 CA CA A1001 1555 1555 2.56 LINK OD1 ASP A 719 CA CA A1001 1555 1555 2.32 LINK OE1 GLU B 573 CA CA B 901 1555 1555 2.29 LINK OE1 GLU B 575 CA CA B 901 1555 1555 2.49 LINK OE2 GLU B 575 CA CA B 901 1555 1555 2.48 LINK O THR B 598 CA CA B 901 1555 1555 2.43 LINK O GLY B 601 CA CA B 901 1555 1555 2.39 LINK O ASP B 719 CA CA B 901 1555 1555 2.59 LINK OD1 ASP B 719 CA CA B 901 1555 1555 2.35 SITE 1 AC1 5 GLU A 573 GLU A 575 THR A 598 GLY A 601 SITE 2 AC1 5 ASP A 719 SITE 1 AC2 1 ARG A 814 SITE 1 AC3 5 GLU B 573 GLU B 575 THR B 598 GLY B 601 SITE 2 AC3 5 ASP B 719 SITE 1 AC4 2 HIS B 569 ARG B 814 CRYST1 144.320 55.350 111.340 90.00 119.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006929 0.000000 0.003901 0.00000 SCALE2 0.000000 0.018067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010307 0.00000