HEADER VIRAL PROTEIN 01-JUL-16 5LFE TITLE PROTRUDING DOMAIN OF GII.4 HUMAN NOROVIRUS ISOLATE 8-14 IN COMPLEX TITLE 2 WITH HBGA TYPE B (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/SYDNEY/NSW0514/2012/AU; SOURCE 3 ORGANISM_TAXID: 1241973; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN, NOROVIRUS, KEYWDS 2 HBGA, HISTO-BLOOD GROUP ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 3 10-JAN-24 5LFE 1 HETSYN LINK REVDAT 2 29-JUL-20 5LFE 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 12-JUL-17 5LFE 0 JRNL AUTH B.K.SINGH,G.S.HANSMAN JRNL TITL FOUR DECADES OF STRUCTURAL EVOLUTION OF GII.4 NOROVIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 25458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5844 - 4.7827 1.00 2938 156 0.1664 0.1730 REMARK 3 2 4.7827 - 3.7967 0.88 2519 132 0.2037 0.2579 REMARK 3 3 3.7967 - 3.3169 0.74 2105 106 0.2851 0.3004 REMARK 3 4 3.3169 - 3.0137 0.99 2793 147 0.2305 0.2784 REMARK 3 5 3.0137 - 2.7977 0.99 2814 148 0.2421 0.3316 REMARK 3 6 2.7977 - 2.6328 0.96 2710 144 0.2427 0.3043 REMARK 3 7 2.6328 - 2.5010 0.97 2772 145 0.2525 0.3053 REMARK 3 8 2.5010 - 2.3921 0.99 2787 147 0.2518 0.3145 REMARK 3 9 2.3921 - 2.3000 0.98 2751 144 0.2825 0.3462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4943 REMARK 3 ANGLE : 0.881 6764 REMARK 3 CHIRALITY : 0.034 741 REMARK 3 PLANARITY : 0.005 894 REMARK 3 DIHEDRAL : 13.729 1797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8025 -20.8482 116.3302 REMARK 3 T TENSOR REMARK 3 T11: 0.4318 T22: 0.3027 REMARK 3 T33: 0.2374 T12: 0.0229 REMARK 3 T13: -0.0073 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: -0.1544 L22: 1.6833 REMARK 3 L33: 0.3813 L12: 0.0366 REMARK 3 L13: 0.1672 L23: -0.6037 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.0794 S13: 0.2233 REMARK 3 S21: 0.2217 S22: 0.0655 S23: 0.0631 REMARK 3 S31: -0.2421 S32: -0.1548 S33: 0.0313 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4744 4.2570 100.4347 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.3245 REMARK 3 T33: 0.3395 T12: 0.0137 REMARK 3 T13: -0.0465 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.8255 L22: 0.2245 REMARK 3 L33: 2.1098 L12: -0.0623 REMARK 3 L13: 0.1631 L23: -0.0368 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: 0.0119 S13: -0.3748 REMARK 3 S21: 0.0983 S22: -0.3479 S23: 0.1352 REMARK 3 S31: 0.5391 S32: -0.3244 S33: 0.0143 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4352 -2.0780 102.0573 REMARK 3 T TENSOR REMARK 3 T11: 0.4055 T22: 0.2151 REMARK 3 T33: 0.2812 T12: 0.0438 REMARK 3 T13: 0.0537 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.2408 L22: 0.4326 REMARK 3 L33: 2.2513 L12: 0.2812 REMARK 3 L13: 0.0653 L23: -0.7822 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.1257 S13: 0.0024 REMARK 3 S21: 0.1232 S22: 0.0428 S23: 0.1160 REMARK 3 S31: -0.2967 S32: -0.0450 S33: -0.0330 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2907 1.1583 117.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.2830 T22: 0.2837 REMARK 3 T33: 0.2520 T12: 0.0551 REMARK 3 T13: -0.0221 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.0272 L22: 0.7215 REMARK 3 L33: 6.0322 L12: 0.2566 REMARK 3 L13: 0.9982 L23: -0.1245 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: 0.0740 S13: -0.3496 REMARK 3 S21: 0.1938 S22: -0.1206 S23: 0.3647 REMARK 3 S31: 0.4783 S32: -0.3576 S33: -0.0408 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7812 -20.5252 122.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.2984 REMARK 3 T33: 0.1914 T12: -0.0214 REMARK 3 T13: 0.0094 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 1.1123 REMARK 3 L33: -0.0044 L12: 0.0110 REMARK 3 L13: -0.0018 L23: -0.8342 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.0910 S13: 0.0500 REMARK 3 S21: 0.0606 S22: -0.0490 S23: 0.1174 REMARK 3 S31: -0.0590 S32: -0.1068 S33: -0.0157 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 514 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4904 -34.4141 127.9140 REMARK 3 T TENSOR REMARK 3 T11: 0.3799 T22: 0.2957 REMARK 3 T33: 0.2513 T12: -0.0205 REMARK 3 T13: -0.0065 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.5278 L22: 0.8785 REMARK 3 L33: 1.0819 L12: 0.3497 REMARK 3 L13: -0.4442 L23: -0.4709 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.5398 S13: -0.4149 REMARK 3 S21: 0.2098 S22: -0.2499 S23: -0.1005 REMARK 3 S31: -0.0490 S32: -0.0447 S33: 0.0494 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.2385 -19.9253 98.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2269 REMARK 3 T33: 0.2431 T12: 0.0126 REMARK 3 T13: 0.0000 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.0493 L22: 1.7790 REMARK 3 L33: 0.7974 L12: 0.7117 REMARK 3 L13: -0.2354 L23: 0.3569 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.0094 S13: 0.0482 REMARK 3 S21: -0.0543 S22: 0.1369 S23: -0.0353 REMARK 3 S31: -0.0530 S32: 0.0500 S33: -0.0470 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.2928 -1.9736 113.1727 REMARK 3 T TENSOR REMARK 3 T11: 0.3823 T22: 0.2729 REMARK 3 T33: 0.2588 T12: -0.0400 REMARK 3 T13: -0.0330 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.0305 L22: 1.6623 REMARK 3 L33: 2.6252 L12: -0.8000 REMARK 3 L13: -0.6358 L23: 1.6259 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0434 S13: 0.1067 REMARK 3 S21: -0.0706 S22: 0.1949 S23: -0.2921 REMARK 3 S31: 0.0295 S32: 0.0229 S33: -0.2120 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 353 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.6040 2.8908 112.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.2861 REMARK 3 T33: 0.3519 T12: -0.0011 REMARK 3 T13: -0.0695 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2893 L22: 3.8406 REMARK 3 L33: 3.0166 L12: -2.2406 REMARK 3 L13: -0.1991 L23: 0.1811 REMARK 3 S TENSOR REMARK 3 S11: 0.0929 S12: 0.0304 S13: 0.2869 REMARK 3 S21: -0.2267 S22: -0.1625 S23: -0.2805 REMARK 3 S31: -0.1303 S32: -0.3812 S33: 0.0849 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 381 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.9858 -12.1259 96.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.2619 REMARK 3 T33: 0.2367 T12: 0.0082 REMARK 3 T13: 0.0011 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: -0.5037 L22: 0.1603 REMARK 3 L33: 0.5609 L12: 0.1873 REMARK 3 L13: 0.4805 L23: 0.3983 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0380 S13: -0.0155 REMARK 3 S21: 0.0417 S22: -0.0083 S23: -0.0834 REMARK 3 S31: -0.0786 S32: 0.0491 S33: 0.0127 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7712 -34.4432 91.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.5824 T22: 0.2123 REMARK 3 T33: 0.4350 T12: -0.0339 REMARK 3 T13: -0.0365 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.9114 L22: 2.1652 REMARK 3 L33: 1.9868 L12: -0.7423 REMARK 3 L13: 0.5653 L23: -0.6348 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: -0.0443 S13: -0.1227 REMARK 3 S21: -0.3192 S22: -0.1182 S23: 0.1988 REMARK 3 S31: 0.4488 S32: -0.2602 S33: -0.0556 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 485 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.3321 -25.9472 86.6064 REMARK 3 T TENSOR REMARK 3 T11: 0.4303 T22: 0.2237 REMARK 3 T33: 0.2698 T12: 0.0223 REMARK 3 T13: -0.0239 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.6497 L22: 0.7336 REMARK 3 L33: 1.1207 L12: -0.6106 REMARK 3 L13: -0.5565 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0365 S13: -0.2263 REMARK 3 S21: -0.0096 S22: 0.0629 S23: -0.0864 REMARK 3 S31: 0.1817 S32: -0.1204 S33: -0.0472 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 514 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5324 -35.2043 88.1406 REMARK 3 T TENSOR REMARK 3 T11: 0.3493 T22: 0.1234 REMARK 3 T33: 0.3991 T12: 0.0096 REMARK 3 T13: -0.0382 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 1.4392 L22: 1.9722 REMARK 3 L33: 2.9146 L12: -1.3530 REMARK 3 L13: -0.6189 L23: -1.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: 0.3707 S13: -0.3542 REMARK 3 S21: -0.3129 S22: -0.0453 S23: 0.1608 REMARK 3 S31: -0.1932 S32: -0.0940 S33: 0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3574 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 46.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 4OOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, 0.1 M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.71000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 465 SER B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 279 OG REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 391 CG OD1 OD2 REMARK 470 THR A 394 OG1 CG2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 470 GLU B 368 CG CD OE1 OE2 REMARK 470 ARG B 411 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 410 HG1 THR A 413 1.59 REMARK 500 OG SER B 305 OD1 ASN B 307 2.04 REMARK 500 OG1 THR A 267 OD1 ASP A 269 2.13 REMARK 500 OG1 THR B 267 OD2 ASP B 269 2.18 REMARK 500 OE1 GLU B 235 O HOH B 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -25.97 -153.05 REMARK 500 ASP A 391 -174.51 177.61 REMARK 500 SER A 442 142.19 -170.41 REMARK 500 HIS B 373 -26.42 -150.25 REMARK 500 THR B 394 -167.19 -106.76 REMARK 500 SER B 442 142.22 -170.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 850 DISTANCE = 6.46 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KON RELATED DB: PDB REMARK 900 PROTRUDING DOMAIN OF GII.4 HUMAN NOROVIRUS ISOLATE 08-14 DBREF 5LFE A 225 530 UNP M4QNL3 M4QNL3_9CALI 206 511 DBREF 5LFE B 225 530 UNP M4QNL3 M4QNL3_9CALI 206 511 SEQADV 5LFE PRO A 222 UNP M4QNL3 EXPRESSION TAG SEQADV 5LFE GLY A 223 UNP M4QNL3 EXPRESSION TAG SEQADV 5LFE SER A 224 UNP M4QNL3 EXPRESSION TAG SEQADV 5LFE PRO B 222 UNP M4QNL3 EXPRESSION TAG SEQADV 5LFE GLY B 223 UNP M4QNL3 EXPRESSION TAG SEQADV 5LFE SER B 224 UNP M4QNL3 EXPRESSION TAG SEQRES 1 A 309 PRO GLY SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL SEQRES 2 A 309 GLU GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU SEQRES 3 A 309 LYS LEU PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN SEQRES 4 A 309 PRO GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU SEQRES 5 A 309 GLY THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE SEQRES 6 A 309 ARG GLY ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR SEQRES 7 A 309 THR MET ASN LEU ALA SER GLN ASN TRP ASN ASN TYR ASP SEQRES 8 A 309 PRO THR GLU GLU ILE PRO ALA PRO LEU GLY ALA PRO ASP SEQRES 9 A 309 PHE VAL GLY LYS ILE GLN GLY MET LEU THR GLN THR THR SEQRES 10 A 309 ARG ALA ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL SEQRES 11 A 309 TYR THR GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG SEQRES 12 A 309 VAL GLN PHE GLU THR ASP THR ASP HIS ASP PHE GLU ALA SEQRES 13 A 309 ASN GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN SEQRES 14 A 309 ASP GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP SEQRES 15 A 309 VAL LEU PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL SEQRES 16 A 309 HIS LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 A 309 GLN LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER SEQRES 18 A 309 GLY TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN SEQRES 19 A 309 GLU TRP VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA SEQRES 20 A 309 GLN SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP SEQRES 21 A 309 THR GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER SEQRES 22 A 309 GLY TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU SEQRES 23 A 309 VAL ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP SEQRES 24 A 309 VAL ASN GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 309 PRO GLY SER LYS PRO PHE SER VAL PRO VAL LEU THR VAL SEQRES 2 B 309 GLU GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU SEQRES 3 B 309 LYS LEU PHE THR GLY PRO SER SER ALA PHE VAL VAL GLN SEQRES 4 B 309 PRO GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU SEQRES 5 B 309 GLY THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE SEQRES 6 B 309 ARG GLY ASP VAL THR HIS ILE THR GLY SER ARG ASN TYR SEQRES 7 B 309 THR MET ASN LEU ALA SER GLN ASN TRP ASN ASN TYR ASP SEQRES 8 B 309 PRO THR GLU GLU ILE PRO ALA PRO LEU GLY ALA PRO ASP SEQRES 9 B 309 PHE VAL GLY LYS ILE GLN GLY MET LEU THR GLN THR THR SEQRES 10 B 309 ARG ALA ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL SEQRES 11 B 309 TYR THR GLY SER ALA ASP PHE ALA PRO LYS LEU GLY ARG SEQRES 12 B 309 VAL GLN PHE GLU THR ASP THR ASP HIS ASP PHE GLU ALA SEQRES 13 B 309 ASN GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN SEQRES 14 B 309 ASP GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP SEQRES 15 B 309 VAL LEU PRO SER TYR SER GLY ARG ASN THR HIS ASN VAL SEQRES 16 B 309 HIS LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU SEQRES 17 B 309 GLN LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER SEQRES 18 B 309 GLY TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN SEQRES 19 B 309 GLU TRP VAL GLN TYR PHE TYR GLN GLU ALA ALA PRO ALA SEQRES 20 B 309 GLN SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP SEQRES 21 B 309 THR GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER SEQRES 22 B 309 GLY TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU SEQRES 23 B 309 VAL ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP SEQRES 24 B 309 VAL ASN GLN PHE TYR THR LEU ALA PRO MET HET GLA C 1 12 HET FUC C 2 10 HET GLA C 3 11 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 GLA 2(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 HOH *333(H2 O) HELIX 1 1 PRO A 360 LEU A 362 5 3 HELIX 2 2 GLN A 455 GLU A 464 1 10 HELIX 3 3 PRO B 360 LEU B 362 5 3 HELIX 4 4 GLN B 455 GLU B 464 1 10 SHEET 1 A 3 LYS A 248 THR A 251 0 SHEET 2 A 3 LEU A 432 THR A 437 -1 SHEET 3 A 3 ASP A 448 CYS A 451 -1 SHEET 1 B 6 ARG A 364 GLU A 368 0 SHEET 2 B 6 ASN A 298 LEU A 303 -1 SHEET 3 B 6 PHE A 286 HIS A 292 -1 SHEET 4 B 6 THR A 381 VAL A 388 -1 SHEET 5 B 6 LYS A 329 THR A 337 -1 SHEET 6 B 6 THR A 344 TYR A 352 -1 SHEET 1 C 5 GLU A 429 LEU A 431 0 SHEET 2 C 5 TYR A 496 ALA A 500 -1 SHEET 3 C 5 VAL A 485 HIS A 492 -1 SHEET 4 C 5 VAL A 472 VAL A 478 -1 SHEET 5 C 5 TYR A 514 VAL A 521 -1 SHEET 1 D 2 GLY A 387 ILE A 389 0 SHEET 2 D 2 PRO A 439 SER A 442 1 SHEET 1 E 3 LYS B 248 THR B 251 0 SHEET 2 E 3 LEU B 432 THR B 437 -1 SHEET 3 E 3 ASP B 448 CYS B 451 -1 SHEET 1 F 6 ARG B 364 GLU B 368 0 SHEET 2 F 6 ASN B 298 LEU B 303 -1 SHEET 3 F 6 PHE B 286 HIS B 292 -1 SHEET 4 F 6 THR B 381 VAL B 388 -1 SHEET 5 F 6 LYS B 329 THR B 337 -1 SHEET 6 F 6 THR B 344 TYR B 352 -1 SHEET 1 G 5 GLU B 429 LEU B 431 0 SHEET 2 G 5 TYR B 496 ALA B 500 -1 SHEET 3 G 5 VAL B 485 HIS B 492 -1 SHEET 4 G 5 VAL B 472 VAL B 478 -1 SHEET 5 G 5 TYR B 514 VAL B 521 -1 SHEET 1 H 2 GLY B 387 ILE B 389 0 SHEET 2 H 2 PRO B 439 SER B 442 1 LINK O2 GLA C 1 C1 FUC C 2 1555 1555 1.41 LINK O3 GLA C 1 C1 GLA C 3 1555 1555 1.41 CISPEP 1 GLU A 399 PRO A 400 0 -2.04 CISPEP 2 GLU B 399 PRO B 400 0 -2.43 CRYST1 63.830 55.420 87.100 90.00 99.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015667 0.000000 0.002587 0.00000 SCALE2 0.000000 0.018044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011637 0.00000