HEADER CELL ADHESION 04-JUL-16 5LFU TITLE MYELIN-ASSOCIATED GLYCOPROTEIN (MAG) GLYCOSYLATED AND LYSINE- TITLE 2 METHYLATED FULL EXTRACELLULAR DOMAIN CAVEAT 5LFU NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELIN-ASSOCIATED GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIGLEC-4A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAG; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GNTI-/- AND EBNA1-EXPRESSING; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 11 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS MYELIN, CELL ADHESION, SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,B.J.C.JANSSEN REVDAT 4 10-JAN-24 5LFU 1 HETSYN LINK REVDAT 3 29-JUL-20 5LFU 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-SEP-17 5LFU 1 REMARK REVDAT 1 14-DEC-16 5LFU 0 JRNL AUTH M.F.PRONKER,S.LEMSTRA,J.SNIJDER,A.J.HECK,D.M.THIES-WEESIE, JRNL AUTH 2 R.J.PASTERKAMP,B.J.JANSSEN JRNL TITL STRUCTURAL BASIS OF MYELIN-ASSOCIATED GLYCOPROTEIN ADHESION JRNL TITL 2 AND SIGNALLING. JRNL REF NAT COMMUN V. 7 13584 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27922006 JRNL DOI 10.1038/NCOMMS13584 REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 114.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1114.6201 - 7.3525 1.00 3192 159 0.2367 0.2392 REMARK 3 2 7.3525 - 5.8359 1.00 2940 152 0.3777 0.4189 REMARK 3 3 5.8359 - 5.0982 1.00 2875 150 0.3438 0.3657 REMARK 3 4 5.0982 - 4.6321 1.00 2800 167 0.3872 0.3925 REMARK 3 5 4.6321 - 4.3001 1.00 2849 141 0.4343 0.4431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4058 REMARK 3 ANGLE : 1.331 5563 REMARK 3 CHIRALITY : 0.198 663 REMARK 3 PLANARITY : 0.008 710 REMARK 3 DIHEDRAL : 14.155 1489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.5919 23.2026 297.4901 REMARK 3 T TENSOR REMARK 3 T11: 5.2822 T22: 2.5203 REMARK 3 T33: 3.6416 T12: 0.5936 REMARK 3 T13: 0.7609 T23: -0.9553 REMARK 3 L TENSOR REMARK 3 L11: 8.2712 L22: 2.1991 REMARK 3 L33: 7.7179 L12: 1.7036 REMARK 3 L13: 1.4436 L23: -2.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: 0.7159 S13: 0.0388 REMARK 3 S21: 0.1285 S22: -0.7953 S23: 0.4387 REMARK 3 S31: 1.2813 S32: -0.8425 S33: 0.6203 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6887 42.7499 314.3286 REMARK 3 T TENSOR REMARK 3 T11: 5.6165 T22: 5.2793 REMARK 3 T33: 3.7660 T12: 1.8139 REMARK 3 T13: 0.3098 T23: -0.3753 REMARK 3 L TENSOR REMARK 3 L11: 0.9312 L22: 1.6864 REMARK 3 L33: 0.0796 L12: 2.6023 REMARK 3 L13: 0.9061 L23: 1.8795 REMARK 3 S TENSOR REMARK 3 S11: 1.6719 S12: 1.0315 S13: -0.0485 REMARK 3 S21: -3.5439 S22: -0.8248 S23: -1.8726 REMARK 3 S31: -2.3557 S32: -1.9117 S33: -0.9938 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6534 67.5689 349.7693 REMARK 3 T TENSOR REMARK 3 T11: 3.6111 T22: 2.8134 REMARK 3 T33: 3.5265 T12: 0.2971 REMARK 3 T13: 0.1510 T23: -0.7391 REMARK 3 L TENSOR REMARK 3 L11: 5.7541 L22: 4.5132 REMARK 3 L33: 5.7993 L12: -0.9896 REMARK 3 L13: -3.2707 L23: -0.0481 REMARK 3 S TENSOR REMARK 3 S11: 2.2241 S12: 0.8717 S13: -1.7177 REMARK 3 S21: -1.7769 S22: -1.2918 S23: -1.6013 REMARK 3 S31: -1.8774 S32: -0.2881 S33: -0.5346 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 411) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8073 94.2976 380.3178 REMARK 3 T TENSOR REMARK 3 T11: 4.2633 T22: 3.1353 REMARK 3 T33: 3.3117 T12: -0.5651 REMARK 3 T13: -0.0541 T23: -0.2488 REMARK 3 L TENSOR REMARK 3 L11: 7.1000 L22: 6.7393 REMARK 3 L33: 5.9158 L12: 4.7461 REMARK 3 L13: 4.9163 L23: 0.3938 REMARK 3 S TENSOR REMARK 3 S11: -0.4646 S12: 1.0533 S13: 1.9510 REMARK 3 S21: -0.6839 S22: -0.1013 S23: 1.2024 REMARK 3 S31: -1.3035 S32: 0.6713 S33: 1.0174 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 506) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8625 113.3425 416.1318 REMARK 3 T TENSOR REMARK 3 T11: 4.6946 T22: 3.8163 REMARK 3 T33: 3.0462 T12: -0.9515 REMARK 3 T13: -0.5735 T23: -0.1230 REMARK 3 L TENSOR REMARK 3 L11: 4.7203 L22: 5.4335 REMARK 3 L33: 1.6125 L12: -1.4771 REMARK 3 L13: -0.5855 L23: -2.4315 REMARK 3 S TENSOR REMARK 3 S11: -0.7647 S12: -1.1434 S13: 0.8782 REMARK 3 S21: -0.6087 S22: 0.8224 S23: 0.5710 REMARK 3 S31: -1.4674 S32: 2.0893 S33: -0.0610 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97553 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15430 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.300 REMARK 200 RESOLUTION RANGE LOW (A) : 114.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 35.70 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 36.90 REMARK 200 R MERGE FOR SHELL (I) : 3.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1URL, 4FRW, 1CS6, 3P3Y, 2YD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN FROM PROTEIN THAT REMARK 280 WAS MODIFIED BY REDUCTIVE LYSINE METHYLATION. PROTEIN WAS REMARK 280 CONCENTRATED TO 8.4 MG/ML, WHICH WAS MIXED 1:1 WITH RESERVOIR REMARK 280 SOLUTION. CRYSTALS GREW IN A CONDITION CONTAINING 200 MM NAOAC REMARK 280 AND 20 % PEG3350 (W/V)., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 458.31800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 229.15900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 343.73850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 114.57950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 572.89750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 458.31800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 229.15900 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 114.57950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 343.73850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 572.89750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 101.23700 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 175.34763 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 802.05650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 507 REMARK 465 ARG A 508 REMARK 465 ALA A 509 REMARK 465 ALA A 510 REMARK 465 ALA A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 20 OD2 ASP A 48 2.17 REMARK 500 OD1 ASP A 48 NH2 ARG A 98 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 75 OE2 GLU A 445 6644 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 62 -8.97 67.83 REMARK 500 TYR A 69 108.87 -47.15 REMARK 500 ASN A 125 60.04 -118.61 REMARK 500 ASP A 192 -125.21 50.76 REMARK 500 THR A 207 -146.96 -110.96 REMARK 500 GLU A 244 83.12 -69.00 REMARK 500 SER A 247 -145.73 -84.11 REMARK 500 PRO A 268 109.37 -54.99 REMARK 500 ASP A 276 15.87 58.50 REMARK 500 LEU A 280 -136.21 53.82 REMARK 500 ASN A 332 -159.90 -111.09 REMARK 500 VAL A 335 -36.11 -132.15 REMARK 500 ASP A 354 108.26 -50.10 REMARK 500 LYS A 363 -19.54 72.63 REMARK 500 LEU A 366 -68.48 -104.35 REMARK 500 ASP A 386 1.65 -68.15 REMARK 500 LEU A 417 31.38 -94.33 REMARK 500 ASN A 450 -157.17 52.49 REMARK 500 ASN A 454 -7.90 69.41 REMARK 500 THR A 456 -103.79 56.77 REMARK 500 PHE A 460 -114.01 60.02 REMARK 500 ASN A 492 -155.19 -131.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LFU A 20 508 UNP P20917 MAG_MOUSE 20 508 SEQADV 5LFU GLY A 18 UNP P20917 EXPRESSION TAG SEQADV 5LFU SER A 19 UNP P20917 EXPRESSION TAG SEQADV 5LFU ALA A 509 UNP P20917 EXPRESSION TAG SEQADV 5LFU ALA A 510 UNP P20917 EXPRESSION TAG SEQADV 5LFU ALA A 511 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 512 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 513 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 514 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 515 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 516 UNP P20917 EXPRESSION TAG SEQADV 5LFU HIS A 517 UNP P20917 EXPRESSION TAG SEQRES 1 A 500 GLY SER GLY HIS TRP GLY ALA TRP MET PRO SER THR ILE SEQRES 2 A 500 SER ALA PHE GLU GLY THR CYS VAL SER ILE PRO CYS ARG SEQRES 3 A 500 PHE ASP PHE PRO ASP GLU LEU ARG PRO ALA VAL VAL HIS SEQRES 4 A 500 GLY VAL TRP TYR PHE ASN SER PRO TYR PRO LYS ASN TYR SEQRES 5 A 500 PRO PRO VAL VAL PHE LYS SER ARG THR GLN VAL VAL HIS SEQRES 6 A 500 GLU SER PHE GLN GLY ARG SER ARG LEU LEU GLY ASP LEU SEQRES 7 A 500 GLY LEU ARG ASN CYS THR LEU LEU LEU SER THR LEU SER SEQRES 8 A 500 PRO GLU LEU GLY GLY LYS TYR TYR PHE ARG GLY ASP LEU SEQRES 9 A 500 GLY GLY TYR ASN GLN TYR THR PHE SER GLU HIS SER VAL SEQRES 10 A 500 LEU ASP ILE VAL ASN THR PRO ASN ILE VAL VAL PRO PRO SEQRES 11 A 500 GLU VAL VAL ALA GLY THR GLU VAL GLU VAL SER CYS MET SEQRES 12 A 500 VAL PRO ASP ASN CYS PRO GLU LEU ARG PRO GLU LEU SER SEQRES 13 A 500 TRP LEU GLY HIS GLU GLY LEU GLY GLU PRO THR VAL LEU SEQRES 14 A 500 GLY ARG LEU ARG GLU ASP GLU GLY THR TRP VAL GLN VAL SEQRES 15 A 500 SER LEU LEU HIS PHE VAL PRO THR ARG GLU ALA ASN GLY SEQRES 16 A 500 HIS ARG LEU GLY CYS GLN ALA ALA PHE PRO ASN THR THR SEQRES 17 A 500 LEU GLN PHE GLU GLY TYR ALA SER LEU ASP VAL LYS TYR SEQRES 18 A 500 PRO PRO VAL ILE VAL GLU MET ASN SER SER VAL GLU ALA SEQRES 19 A 500 ILE GLU GLY SER HIS VAL SER LEU LEU CYS GLY ALA ASP SEQRES 20 A 500 SER ASN PRO PRO PRO LEU LEU THR TRP MET ARG ASP GLY SEQRES 21 A 500 MET VAL LEU ARG GLU ALA VAL ALA LYS SER LEU TYR LEU SEQRES 22 A 500 ASP LEU GLU GLU VAL THR PRO GLY GLU ASP GLY VAL TYR SEQRES 23 A 500 ALA CYS LEU ALA GLU ASN ALA TYR GLY GLN ASP ASN ARG SEQRES 24 A 500 THR VAL GLU LEU SER VAL MET TYR ALA PRO TRP LYS PRO SEQRES 25 A 500 THR VAL ASN GLY THR VAL VAL ALA VAL GLU GLY GLU THR SEQRES 26 A 500 VAL SER ILE LEU CYS SER THR GLN SER ASN PRO ASP PRO SEQRES 27 A 500 ILE LEU THR ILE PHE LYS GLU LYS GLN ILE LEU ALA THR SEQRES 28 A 500 VAL ILE TYR GLU SER GLN LEU GLN LEU GLU LEU PRO ALA SEQRES 29 A 500 VAL THR PRO GLU ASP ASP GLY GLU TYR TRP CYS VAL ALA SEQRES 30 A 500 GLU ASN GLN TYR GLY GLN ARG ALA THR ALA PHE ASN LEU SEQRES 31 A 500 SER VAL GLU PHE ALA PRO ILE ILE LEU LEU GLU SER HIS SEQRES 32 A 500 CYS ALA ALA ALA ARG ASP THR VAL GLN CYS LEU CYS VAL SEQRES 33 A 500 VAL LYS SER ASN PRO GLU PRO SER VAL ALA PHE GLU LEU SEQRES 34 A 500 PRO SER ARG ASN VAL THR VAL ASN GLU THR GLU ARG GLU SEQRES 35 A 500 PHE VAL TYR SER GLU ARG SER GLY LEU LEU LEU THR SER SEQRES 36 A 500 ILE LEU THR ILE ARG GLY GLN ALA GLN ALA PRO PRO ARG SEQRES 37 A 500 VAL ILE CYS THR SER ARG ASN LEU TYR GLY THR GLN SER SEQRES 38 A 500 LEU GLU LEU PRO PHE GLN GLY ALA HIS ARG ALA ALA ALA SEQRES 39 A 500 HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET NAG D 2 14 HET MAN A 601 11 HET NAG A 607 14 HET NAG A 608 14 HET NAG A 609 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 3(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 HELIX 1 AA1 ASP A 94 ARG A 98 5 5 HELIX 2 AA2 SER A 108 GLY A 112 5 5 HELIX 3 AA3 THR A 383 ASP A 387 5 5 SHEET 1 AA1 2 GLY A 23 TRP A 25 0 SHEET 2 AA1 2 ARG A 43 ASP A 45 -1 O ARG A 43 N TRP A 25 SHEET 1 AA2 5 THR A 29 ALA A 32 0 SHEET 2 AA2 5 SER A 133 ILE A 137 1 O ASP A 136 N ILE A 30 SHEET 3 AA2 5 GLY A 113 ASP A 120 -1 N TYR A 115 O SER A 133 SHEET 4 AA2 5 HIS A 56 PHE A 61 -1 N VAL A 58 O ARG A 118 SHEET 5 AA2 5 VAL A 72 LYS A 75 -1 O VAL A 73 N TRP A 59 SHEET 1 AA3 4 THR A 29 ALA A 32 0 SHEET 2 AA3 4 SER A 133 ILE A 137 1 O ASP A 136 N ILE A 30 SHEET 3 AA3 4 GLY A 113 ASP A 120 -1 N TYR A 115 O SER A 133 SHEET 4 AA3 4 GLN A 126 THR A 128 -1 O TYR A 127 N GLY A 119 SHEET 1 AA4 3 VAL A 38 ILE A 40 0 SHEET 2 AA4 3 LEU A 102 LEU A 104 -1 O LEU A 102 N ILE A 40 SHEET 3 AA4 3 SER A 89 LEU A 91 -1 N ARG A 90 O LEU A 103 SHEET 1 AA5 4 ASN A 142 VAL A 144 0 SHEET 2 AA5 4 VAL A 155 VAL A 161 -1 O MET A 160 N ASN A 142 SHEET 3 AA5 4 THR A 195 PHE A 204 -1 O PHE A 204 N VAL A 155 SHEET 4 AA5 4 ARG A 188 GLU A 191 -1 N LEU A 189 O VAL A 197 SHEET 1 AA6 2 VAL A 149 VAL A 150 0 SHEET 2 AA6 2 VAL A 236 LYS A 237 1 O LYS A 237 N VAL A 149 SHEET 1 AA7 3 GLU A 171 LEU A 175 0 SHEET 2 AA7 3 ARG A 214 ALA A 220 -1 O GLY A 216 N LEU A 175 SHEET 3 AA7 3 GLN A 227 SER A 233 -1 O ALA A 232 N LEU A 215 SHEET 1 AA8 3 VAL A 241 MET A 245 0 SHEET 2 AA8 3 VAL A 257 ASP A 264 -1 O GLY A 262 N GLU A 244 SHEET 3 AA8 3 SER A 287 LEU A 292 -1 O LEU A 292 N VAL A 257 SHEET 1 AA9 5 VAL A 249 ILE A 252 0 SHEET 2 AA9 5 GLY A 312 MET A 323 1 O SER A 321 N VAL A 249 SHEET 3 AA9 5 GLY A 301 ASN A 309 -1 N GLY A 301 O LEU A 320 SHEET 4 AA9 5 LEU A 270 MET A 274 -1 N MET A 274 O ALA A 304 SHEET 5 AA9 5 GLU A 282 VAL A 284 -1 O ALA A 283 N LEU A 271 SHEET 1 AB1 3 THR A 330 GLY A 333 0 SHEET 2 AB1 3 VAL A 343 SER A 348 -1 O SER A 348 N THR A 330 SHEET 3 AB1 3 LEU A 375 LEU A 379 -1 O LEU A 377 N ILE A 345 SHEET 1 AB2 4 GLN A 364 VAL A 369 0 SHEET 2 AB2 4 ILE A 356 LYS A 361 -1 N LEU A 357 O VAL A 369 SHEET 3 AB2 4 GLY A 388 GLU A 395 -1 O VAL A 393 N THR A 358 SHEET 4 AB2 4 ARG A 401 LEU A 407 -1 O THR A 403 N CYS A 392 SHEET 1 AB3 3 ILE A 414 ILE A 415 0 SHEET 2 AB3 3 VAL A 428 LYS A 435 -1 O LYS A 435 N ILE A 414 SHEET 3 AB3 3 HIS A 420 ALA A 423 -1 N HIS A 420 O LEU A 431 SHEET 1 AB4 4 ILE A 414 ILE A 415 0 SHEET 2 AB4 4 VAL A 428 LYS A 435 -1 O LYS A 435 N ILE A 414 SHEET 3 AB4 4 LEU A 469 ILE A 476 -1 O LEU A 470 N VAL A 434 SHEET 4 AB4 4 TYR A 462 SER A 466 -1 N TYR A 462 O ILE A 473 SHEET 1 AB5 3 SER A 441 GLU A 445 0 SHEET 2 AB5 3 VAL A 486 ARG A 491 -1 O THR A 489 N ALA A 443 SHEET 3 AB5 3 THR A 496 LEU A 501 -1 O LEU A 501 N VAL A 486 SSBOND 1 CYS A 37 CYS A 165 1555 1555 2.04 SSBOND 2 CYS A 42 CYS A 100 1555 1555 2.03 SSBOND 3 CYS A 159 CYS A 217 1555 1555 2.04 SSBOND 4 CYS A 261 CYS A 305 1555 1555 2.03 SSBOND 5 CYS A 347 CYS A 392 1555 1555 2.05 SSBOND 6 CYS A 421 CYS A 430 1555 1555 2.04 SSBOND 7 CYS A 432 CYS A 488 1555 1555 2.04 LINK CD1 TRP A 22 C1 MAN A 601 1555 1555 1.53 LINK ND2 ASN A 99 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 223 C1 NAG A 607 1555 1555 1.44 LINK ND2 ASN A 246 C1 NAG A 608 1555 1555 1.45 LINK ND2 ASN A 315 C1 NAG A 609 1555 1555 1.46 LINK ND2 ASN A 332 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 406 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.48 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.46 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 CRYST1 101.237 101.237 687.477 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009878 0.005703 0.000000 0.00000 SCALE2 0.000000 0.011406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001455 0.00000