data_5LFY # _entry.id 5LFY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LFY pdb_00005lfy 10.2210/pdb5lfy/pdb WWPDB D_1200000600 ? ? BMRB 34019 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 34019 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LFY _pdbx_database_status.recvd_initial_deposition_date 2016-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Polshakov, V.I.' 1 ? 'Mantsyzov, A.B.' 2 ? 'Kozin, S.A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 11734 _citation.page_last 11739 _citation.title ;A Binuclear Zinc Interaction Fold Discovered in the Homodimer of Alzheimer's Amyloid-beta Fragment with Taiwanese Mutation D7H. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201704615 _citation.pdbx_database_id_PubMed 28570778 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Polshakov, V.I.' 1 ? primary 'Mantsyzov, A.B.' 2 ? primary 'Kozin, S.A.' 3 ? primary 'Adzhubei, A.A.' 4 ? primary 'Zhokhov, S.S.' 5 ? primary 'van Beek, W.' 6 ? primary 'Kulikova, A.A.' 7 ? primary 'Indeykina, M.I.' 8 ? primary 'Mitkevich, V.A.' 9 ? primary 'Makarov, A.A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloid beta A4 protein' 1219.267 2 ? ? 'UNP residues 17-26' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'DAEFRHHSGY(NH2)' _entity_poly.pdbx_seq_one_letter_code_can DAEFRHHSGYX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L7XE61_HUMAN _struct_ref.pdbx_db_accession L7XE61 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGY _struct_ref.pdbx_align_begin 17 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LFY A 1 ? 10 ? L7XE61 17 ? 26 ? 1 10 2 1 5LFY B 1 ? 10 ? L7XE61 17 ? 26 ? 1 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5LFY HIS A 7 ? UNP L7XE61 ASP 23 conflict 7 1 1 5LFY NH2 A 11 ? UNP L7XE61 ? ? amidation 11 2 2 5LFY HIS B 7 ? UNP L7XE61 ASP 23 conflict 7 3 2 5LFY NH2 B 11 ? UNP L7XE61 ? ? amidation 11 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D DQF-COSY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 11 1 2 '2D 1H-1H NOESY' 1 isotropic 4 1 1 '2D 1H-15N HSQC' 1 isotropic 5 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 6 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 7 1 2 '2D 1H-13C HSQC aliphatic' 1 isotropic 8 1 2 '2D 1H-1H ROESY' 1 isotropic 9 1 2 '2D DQF-COSY' 1 isotropic 10 1 2 '2D DOSY' 1 isotropic 12 1 3 '2D 1H-15N HMBC' 1 isotropic 13 1 3 '2D 13C-edited,13C-filtered NOESY' 1 isotropic 14 1 3 '2D 1H-15N HMBC-NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 3 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.02 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19, 90% H2O/10% D2O' '90% H2O/10% D2O' D7HAbeta10_H2O solution ? 2 '1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19, 100% D2O' '100% D2O' D7HAbeta10_D2O solution ? 3 ;0.8 mM D7H_Abeta(1-10), 0.8 mM [U-99% 13C,15N]-(D1,3); [U-99% 15N]-(H6,H7) D7H_Abeta(1-10), 1.7 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19, 100% D2O ; '100% D2O' D7HAbeta10_labeled solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5LFY _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 5LFY _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' # _pdbx_nmr_representative.entry_id 5LFY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'data analysis' Sparky ? Goddard 6 'data analysis' Anglesearch ? Polshakov 4 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 5 'data analysis' 'PROCHECK / PROCHECK-NMR' ? 'Laskowski and MacArthur' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LFY _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LFY _struct.title ;Zinc bound dimer of the fragment of human amyloid-beta peptide with Alzheimer's disease pathogenic Taiwanese mutation D7H ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LFY _struct_keywords.text ;Alzheimer's disease, amyloid-beta peptide, zinc complex, zinc-bound dimer, structural protein ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 2 ? HIS A 7 ? ALA A 2 HIS A 7 1 ? 6 HELX_P HELX_P2 AA2 ALA B 2 ? HIS B 7 ? ALA B 2 HIS B 7 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 10 C ? ? ? 1_555 A NH2 11 N ? ? A TYR 10 A NH2 11 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? B TYR 10 C ? ? ? 1_555 B NH2 11 N ? ? B TYR 10 B NH2 11 1_555 ? ? ? ? ? ? ? 1.332 ? ? metalc1 metalc ? ? A ASP 1 O ? ? ? 1_555 D ZN . ZN ? ? A ASP 1 A ZN 102 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc2 metalc ? ? A GLU 3 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 3 A ZN 101 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc3 metalc ? ? A GLU 3 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 3 A ZN 101 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc4 metalc ? ? A HIS 6 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 6 A ZN 102 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc5 metalc ? ? A HIS 7 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 7 A ZN 101 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc6 metalc ? ? C ZN . ZN ? ? ? 1_555 B ASP 1 O ? ? A ZN 101 B ASP 1 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 B HIS 6 NE2 ? ? A ZN 101 B HIS 6 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 B GLU 3 OE1 ? ? A ZN 102 B GLU 3 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc9 metalc ? ? D ZN . ZN ? ? ? 1_555 B GLU 3 OE2 ? ? A ZN 102 B GLU 3 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc10 metalc ? ? D ZN . ZN ? ? ? 1_555 B HIS 7 NE2 ? ? A ZN 102 B HIS 7 1_555 ? ? ? ? ? ? ? 2.037 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 101 ? 5 'binding site for residue ZN A 101' AC2 Software A ZN 102 ? 5 'binding site for residue ZN A 102' AC3 Software B TYR 10 ? 1 'binding site for Di-peptide TYR B 10 and NH2 B 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 3 ? GLU A 3 . ? 1_555 ? 2 AC1 5 HIS A 7 ? HIS A 7 . ? 1_555 ? 3 AC1 5 ASP B 1 ? ASP B 1 . ? 1_555 ? 4 AC1 5 ALA B 2 ? ALA B 2 . ? 1_555 ? 5 AC1 5 HIS B 6 ? HIS B 6 . ? 1_555 ? 6 AC2 5 ASP A 1 ? ASP A 1 . ? 1_555 ? 7 AC2 5 ALA A 2 ? ALA A 2 . ? 1_555 ? 8 AC2 5 HIS A 6 ? HIS A 6 . ? 1_555 ? 9 AC2 5 GLU B 3 ? GLU B 3 . ? 1_555 ? 10 AC2 5 HIS B 7 ? HIS B 7 . ? 1_555 ? 11 AC3 1 GLY B 9 ? GLY B 9 . ? 1_555 ? # _atom_sites.entry_id 5LFY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 NH2 11 11 11 NH2 NH2 A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 HIS 6 6 6 HIS HIS B . n B 1 7 HIS 7 7 7 HIS HIS B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 NH2 11 11 11 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 101 101 ZN ZN A . D 2 ZN 1 102 101 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 820 ? 1 MORE -76 ? 1 'SSA (A^2)' 2190 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 1 ? A ASP 1 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 98.7 ? 2 O ? A ASP 1 ? A ASP 1 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 OE1 ? B GLU 3 ? B GLU 3 ? 1_555 123.2 ? 3 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 OE1 ? B GLU 3 ? B GLU 3 ? 1_555 99.3 ? 4 O ? A ASP 1 ? A ASP 1 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 OE2 ? B GLU 3 ? B GLU 3 ? 1_555 85.9 ? 5 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 OE2 ? B GLU 3 ? B GLU 3 ? 1_555 160.9 ? 6 OE1 ? B GLU 3 ? B GLU 3 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 OE2 ? B GLU 3 ? B GLU 3 ? 1_555 63.3 ? 7 O ? A ASP 1 ? A ASP 1 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 NE2 ? B HIS 7 ? B HIS 7 ? 1_555 105.0 ? 8 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 NE2 ? B HIS 7 ? B HIS 7 ? 1_555 108.8 ? 9 OE1 ? B GLU 3 ? B GLU 3 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 NE2 ? B HIS 7 ? B HIS 7 ? 1_555 118.9 ? 10 OE2 ? B GLU 3 ? B GLU 3 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 NE2 ? B HIS 7 ? B HIS 7 ? 1_555 87.6 ? 11 OE1 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 OE2 ? A GLU 3 ? A GLU 3 ? 1_555 59.2 ? 12 OE1 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? A HIS 7 ? A HIS 7 ? 1_555 119.0 ? 13 OE2 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? A HIS 7 ? A HIS 7 ? 1_555 98.5 ? 14 OE1 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? B ASP 1 ? B ASP 1 ? 1_555 123.1 ? 15 OE2 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? B ASP 1 ? B ASP 1 ? 1_555 81.3 ? 16 NE2 ? A HIS 7 ? A HIS 7 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 O ? B ASP 1 ? B ASP 1 ? 1_555 105.0 ? 17 OE1 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? B HIS 6 ? B HIS 6 ? 1_555 99.2 ? 18 OE2 ? A GLU 3 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? B HIS 6 ? B HIS 6 ? 1_555 151.7 ? 19 NE2 ? A HIS 7 ? A HIS 7 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? B HIS 6 ? B HIS 6 ? 1_555 108.6 ? 20 O ? B ASP 1 ? B ASP 1 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 NE2 ? B HIS 6 ? B HIS 6 ? 1_555 98.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-23 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_nmr_software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 8 4 'Structure model' '_pdbx_nmr_spectrometer.model' 9 4 'Structure model' '_struct_conn.conn_type_id' 10 4 'Structure model' '_struct_conn.id' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_conn_type.id' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'D7H_Abeta(1-10)' 1.4 ? mM 'natural abundance' 1 ZnCl2 2.8 ? mM 'natural abundance' 1 bis-Tris-d19 10 ? mM '[U-99% 2D]' 2 'D7H_Abeta(1-10)' 1.4 ? mM 'natural abundance' 2 ZnCl2 2.8 ? mM 'natural abundance' 2 bis-Tris-d19 10 ? mM '[U-99% 2D]' 3 'D7H_Abeta(1-10)' 0.8 ? mM 'natural abundance' 3 'D7H_Abeta(1-10)_label' 0.8 ? mM '[U-99% 13C,15N]-(D1,3); [U-99% 15N]-(H6,H7)' 3 ZnCl2 1.7 ? mM 'natural abundance' 3 bis-Tris-d19 10 ? mM '[U-99% 2D]' # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 4 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 7 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -100.27 _pdbx_validate_torsion.psi 79.81 # _pdbx_audit_support.funding_organization 'Russian Science Foundation' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 14-24-00100 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #