HEADER OXIDOREDUCTASE 08-JUL-16 5LGZ TITLE STRUCTURE OF PHOTOREDUCED PENTAERYTHRITOL TETRANITRATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTAERYTHRITOL TETRANITRATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: ONR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PETNR, PETN REDUCTASE, FMN, FNR, PHOTOREDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KWON,O.M.SMITH,P.C.E.MOODY REVDAT 4 10-JAN-24 5LGZ 1 REMARK REVDAT 3 16-OCT-19 5LGZ 1 REMARK REVDAT 2 01-MAR-17 5LGZ 1 JRNL REVDAT 1 15-FEB-17 5LGZ 0 JRNL AUTH H.KWON,O.SMITH,E.L.RAVEN,P.C.MOODY JRNL TITL COMBINING X-RAY AND NEUTRON CRYSTALLOGRAPHY WITH JRNL TITL 2 SPECTROSCOPY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 141 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28177310 JRNL DOI 10.1107/S2059798316016314 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 54130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.4926 - 4.0280 1.00 2857 140 0.1267 0.1500 REMARK 3 2 4.0280 - 3.2151 1.00 2764 135 0.1170 0.1429 REMARK 3 3 3.2151 - 2.8140 1.00 2719 152 0.1323 0.1419 REMARK 3 4 2.8140 - 2.5591 1.00 2710 123 0.1423 0.1617 REMARK 3 5 2.5591 - 2.3771 1.00 2665 153 0.1419 0.1792 REMARK 3 6 2.3771 - 2.2377 1.00 2688 134 0.1645 0.2074 REMARK 3 7 2.2377 - 2.1262 1.00 2659 133 0.1482 0.1956 REMARK 3 8 2.1262 - 2.0341 1.00 2662 129 0.1472 0.2102 REMARK 3 9 2.0341 - 1.9561 0.99 2649 151 0.1511 0.2076 REMARK 3 10 1.9561 - 1.8888 0.99 2601 152 0.1974 0.2193 REMARK 3 11 1.8888 - 1.8300 0.98 2611 137 0.1744 0.2353 REMARK 3 12 1.8300 - 1.7778 0.97 2557 138 0.1494 0.1996 REMARK 3 13 1.7778 - 1.7311 0.97 2555 141 0.1497 0.1796 REMARK 3 14 1.7311 - 1.6890 0.95 2519 155 0.1429 0.1931 REMARK 3 15 1.6890 - 1.6507 0.94 2475 135 0.1458 0.1953 REMARK 3 16 1.6507 - 1.6156 0.92 2443 133 0.1501 0.2055 REMARK 3 17 1.6156 - 1.5834 0.89 2340 128 0.1558 0.2192 REMARK 3 18 1.5834 - 1.5536 0.89 2370 122 0.1684 0.1943 REMARK 3 19 1.5536 - 1.5259 0.87 2297 130 0.1783 0.2114 REMARK 3 20 1.5259 - 1.5000 0.85 2241 127 0.1851 0.2144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3097 REMARK 3 ANGLE : 1.357 4244 REMARK 3 CHIRALITY : 0.099 453 REMARK 3 PLANARITY : 0.013 580 REMARK 3 DIHEDRAL : 15.263 1863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 21.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3000 0.1 M SODIUM CITRATE REMARK 280 0.1M CACODYLATE PH 6.2 17 % ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.42500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 279 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 290 O HOH A 501 1.69 REMARK 500 O HIS A 294 O HOH A 502 1.81 REMARK 500 O HOH A 525 O HOH A 803 1.88 REMARK 500 O HOH A 545 O HOH A 901 1.88 REMARK 500 OE2 GLU A 43 O HOH A 503 1.90 REMARK 500 O HOH A 535 O HOH A 543 1.90 REMARK 500 O HOH A 535 O HOH A 539 1.94 REMARK 500 O HOH A 697 O HOH A 952 1.95 REMARK 500 O HOH A 616 O HOH A 836 1.95 REMARK 500 OE1 GLU A 43 O HOH A 504 1.97 REMARK 500 NZ LYS A 85 O HOH A 505 2.00 REMARK 500 O HOH A 812 O HOH A 828 2.03 REMARK 500 O HOH A 576 O HOH A 947 2.03 REMARK 500 O HOH A 799 O HOH A 836 2.04 REMARK 500 O HOH A 527 O HOH A 927 2.06 REMARK 500 O HOH A 808 O HOH A 914 2.06 REMARK 500 O HOH A 963 O HOH A 977 2.06 REMARK 500 ND2 ASN A 242 O HOH A 506 2.07 REMARK 500 O HOH A 1100 O HOH A 1166 2.09 REMARK 500 O HOH A 645 O HOH A 1005 2.09 REMARK 500 O HOH A 634 O HOH A 784 2.09 REMARK 500 O HOH A 799 O HOH A 995 2.09 REMARK 500 O HOH A 668 O HOH A 1078 2.10 REMARK 500 O HOH A 542 O HOH A 796 2.11 REMARK 500 O HOH A 790 O HOH A 819 2.11 REMARK 500 O HOH A 520 O HOH A 1008 2.12 REMARK 500 O HOH A 921 O HOH A 1020 2.13 REMARK 500 O HOH A 519 O HOH A 565 2.13 REMARK 500 O HOH A 509 O HOH A 585 2.14 REMARK 500 O HOH A 547 O HOH A 906 2.14 REMARK 500 O HOH A 646 O HOH A 819 2.15 REMARK 500 O HOH A 1120 O HOH A 1123 2.16 REMARK 500 O HOH A 508 O HOH A 987 2.16 REMARK 500 O HOH A 510 O HOH A 698 2.17 REMARK 500 NE2 GLN A 198 O HOH A 507 2.17 REMARK 500 O HOH A 1163 O HOH A 1164 2.18 REMARK 500 O HOH A 957 O HOH A 973 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 938 O HOH A 1012 3555 1.95 REMARK 500 O HOH A 1068 O HOH A 1097 3555 2.08 REMARK 500 O HOH A 621 O HOH A 955 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 124 59.23 -95.04 REMARK 500 THR A 129 -159.57 -131.92 REMARK 500 TRP A 225 -99.82 -113.68 REMARK 500 ASP A 331 42.69 -99.89 REMARK 500 TYR A 358 -63.01 -130.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1165 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1166 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1167 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1168 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1170 DISTANCE = 7.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNR A 403 DBREF 5LGZ A 2 364 UNP P71278 P71278_ENTCL 3 365 SEQRES 1 A 363 ALA GLU LYS LEU PHE THR PRO LEU LYS VAL GLY ALA VAL SEQRES 2 A 363 THR ALA PRO ASN ARG VAL PHE MET ALA PRO LEU THR ARG SEQRES 3 A 363 LEU ARG SER ILE GLU PRO GLY ASP ILE PRO THR PRO LEU SEQRES 4 A 363 MET GLY GLU TYR TYR ARG GLN ARG ALA SER ALA GLY LEU SEQRES 5 A 363 ILE ILE SER GLU ALA THR GLN ILE SER ALA GLN ALA LYS SEQRES 6 A 363 GLY TYR ALA GLY ALA PRO GLY LEU HIS SER PRO GLU GLN SEQRES 7 A 363 ILE ALA ALA TRP LYS LYS ILE THR ALA GLY VAL HIS ALA SEQRES 8 A 363 GLU ASP GLY ARG ILE ALA VAL GLN LEU TRP HIS THR GLY SEQRES 9 A 363 ARG ILE SER HIS SER SER ILE GLN PRO GLY GLY GLN ALA SEQRES 10 A 363 PRO VAL SER ALA SER ALA LEU ASN ALA ASN THR ARG THR SEQRES 11 A 363 SER LEU ARG ASP GLU ASN GLY ASN ALA ILE ARG VAL ASP SEQRES 12 A 363 THR THR THR PRO ARG ALA LEU GLU LEU ASP GLU ILE PRO SEQRES 13 A 363 GLY ILE VAL ASN ASP PHE ARG GLN ALA VAL ALA ASN ALA SEQRES 14 A 363 ARG GLU ALA GLY PHE ASP LEU VAL GLU LEU HIS SER ALA SEQRES 15 A 363 HIS GLY TYR LEU LEU HIS GLN PHE LEU SER PRO SER SER SEQRES 16 A 363 ASN GLN ARG THR ASP GLN TYR GLY GLY SER VAL GLU ASN SEQRES 17 A 363 ARG ALA ARG LEU VAL LEU GLU VAL VAL ASP ALA VAL CYS SEQRES 18 A 363 ASN GLU TRP SER ALA ASP ARG ILE GLY ILE ARG VAL SER SEQRES 19 A 363 PRO ILE GLY THR PHE GLN ASN VAL ASP ASN GLY PRO ASN SEQRES 20 A 363 GLU GLU ALA ASP ALA LEU TYR LEU ILE GLU GLU LEU ALA SEQRES 21 A 363 LYS ARG GLY ILE ALA TYR LEU HIS MET SER GLU THR ASP SEQRES 22 A 363 LEU ALA GLY GLY LYS PRO TYR SER GLU ALA PHE ARG GLN SEQRES 23 A 363 LYS VAL ARG GLU ARG PHE HIS GLY VAL ILE ILE GLY ALA SEQRES 24 A 363 GLY ALA TYR THR ALA GLU LYS ALA GLU ASP LEU ILE GLY SEQRES 25 A 363 LYS GLY LEU ILE ASP ALA VAL ALA PHE GLY ARG ASP TYR SEQRES 26 A 363 ILE ALA ASN PRO ASP LEU VAL ALA ARG LEU GLN LYS LYS SEQRES 27 A 363 ALA GLU LEU ASN PRO GLN ARG PRO GLU SER PHE TYR GLY SEQRES 28 A 363 GLY GLY ALA GLU GLY TYR THR ASP TYR PRO SER LEU HET IPA A 401 4 HET IPA A 402 4 HET FNR A 403 31 HETNAM IPA ISOPROPYL ALCOHOL HETNAM FNR 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H- HETNAM 2 FNR BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D- HETNAM 3 FNR RIBITOL HETSYN IPA 2-PROPANOL HETSYN FNR TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE FORMUL 2 IPA 2(C3 H8 O) FORMUL 4 FNR C17 H23 N4 O9 P FORMUL 5 HOH *670(H2 O) HELIX 1 AA1 THR A 38 ARG A 48 1 11 HELIX 2 AA2 SER A 76 GLU A 93 1 18 HELIX 3 AA3 HIS A 109 GLN A 117 5 9 HELIX 4 AA4 GLU A 152 ASP A 154 5 3 HELIX 5 AA5 GLU A 155 ALA A 173 1 19 HELIX 6 AA6 TYR A 186 SER A 193 1 8 HELIX 7 AA7 SER A 206 ALA A 211 1 6 HELIX 8 AA8 ALA A 211 TRP A 225 1 15 HELIX 9 AA9 SER A 226 ASP A 228 5 3 HELIX 10 AB1 ASN A 248 ARG A 263 1 16 HELIX 11 AB2 SER A 282 PHE A 293 1 12 HELIX 12 AB3 THR A 304 LYS A 314 1 11 HELIX 13 AB4 GLY A 323 ASN A 329 1 7 HELIX 14 AB5 ASP A 331 LYS A 339 1 9 HELIX 15 AB6 ARG A 346 PHE A 350 5 5 SHEET 1 AA1 2 LEU A 9 VAL A 11 0 SHEET 2 AA1 2 VAL A 14 ALA A 16 -1 O VAL A 14 N VAL A 11 SHEET 1 AA2 9 VAL A 20 MET A 22 0 SHEET 2 AA2 9 LEU A 53 GLN A 60 1 O LEU A 53 N MET A 22 SHEET 3 AA2 9 ILE A 97 TRP A 102 1 O ALA A 98 N ILE A 54 SHEET 4 AA2 9 LEU A 177 SER A 182 1 O GLU A 179 N VAL A 99 SHEET 5 AA2 9 ILE A 230 VAL A 234 1 O GLY A 231 N VAL A 178 SHEET 6 AA2 9 TYR A 267 SER A 271 1 O HIS A 269 N ILE A 232 SHEET 7 AA2 9 VAL A 296 ALA A 300 1 O ILE A 298 N MET A 270 SHEET 8 AA2 9 ALA A 319 PHE A 322 1 O ALA A 321 N GLY A 299 SHEET 9 AA2 9 VAL A 20 MET A 22 1 N PHE A 21 O VAL A 320 SHEET 1 AA3 2 VAL A 120 SER A 121 0 SHEET 2 AA3 2 ARG A 149 ALA A 150 1 O ARG A 149 N SER A 121 SHEET 1 AA4 2 ARG A 130 ARG A 134 0 SHEET 2 AA4 2 ALA A 140 ASP A 144 -1 O ILE A 141 N LEU A 133 SHEET 1 AA5 2 THR A 239 PHE A 240 0 SHEET 2 AA5 2 VAL A 243 ASP A 244 -1 O VAL A 243 N PHE A 240 CISPEP 1 GLU A 32 PRO A 33 0 -4.38 SITE 1 AC1 7 THR A 26 TYR A 68 TYR A 186 FNR A 403 SITE 2 AC1 7 HOH A 509 HOH A 524 HOH A 585 SITE 1 AC2 7 HIS A 184 THR A 273 ASP A 274 LEU A 275 SITE 2 AC2 7 FNR A 403 HOH A 509 HOH A 825 SITE 1 AC3 21 ALA A 23 PRO A 24 LEU A 25 THR A 26 SITE 2 AC3 21 ALA A 58 GLN A 100 HIS A 181 HIS A 184 SITE 3 AC3 21 ARG A 233 GLY A 301 ALA A 302 GLY A 323 SITE 4 AC3 21 ARG A 324 TYR A 351 IPA A 401 IPA A 402 SITE 5 AC3 21 HOH A 567 HOH A 632 HOH A 667 HOH A 732 SITE 6 AC3 21 HOH A 746 CRYST1 56.850 68.650 88.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011245 0.00000