data_5LIT # _entry.id 5LIT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LIT WWPDB D_1200000803 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LIT _pdbx_database_status.recvd_initial_deposition_date 2016-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Millan, C.R.' 1 ? 'Dardonville, C.' 2 ? 'de Koning, H.P.' 3 ? 'Saperas, N.' 4 ? 'Lourdes Campos, J.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 8378 _citation.page_last 8391 _citation.title ;Functional and structural analysis of AT-specific minor groove binders that disrupt DNA-protein interactions and cause disintegration of the Trypanosoma brucei kinetoplast. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkx521 _citation.pdbx_database_id_PubMed 28637278 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Millan, C.R.' 1 primary 'Acosta-Reyes, F.J.' 2 primary 'Lagartera, L.' 3 primary 'Ebiloma, G.U.' 4 primary 'Lemgruber, L.' 5 primary 'Nue Martinez, J.J.' 6 primary 'Saperas, N.' 7 primary 'Dardonville, C.' 8 primary 'de Koning, H.P.' 9 primary 'Campos, J.L.' 10 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 93.67 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LIT _cell.details ? _cell.formula_units_Z ? _cell.length_a 22.330 _cell.length_a_esd ? _cell.length_b 40.250 _cell.length_b_esd ? _cell.length_c 72.423 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*AP*TP*TP*T)-3') ; 1807.241 4 ? ? ? ? 2 non-polymer syn '4-((4,5-dihydro-1H-imidazol-2-yl)amino)-N-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzamide dihydrochloride' 363.416 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 water nat water 18.015 165 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DA)(DT)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AAATTT _entity_poly.pdbx_strand_id D,C,A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DA n 1 4 DT n 1 5 DT n 1 6 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LIT _struct_ref.pdbx_db_accession 5LIT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LIT D 1 ? 6 ? 5LIT 1 ? 6 ? 1 6 2 1 5LIT C 1 ? 6 ? 5LIT 1 ? 6 ? 1 6 3 1 5LIT A 1 ? 6 ? 5LIT 1 ? 6 ? 1 6 4 1 5LIT B 1 ? 6 ? 5LIT 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6XV non-polymer . '4-((4,5-dihydro-1H-imidazol-2-yl)amino)-N-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzamide dihydrochloride' ? 'C19 H21 N7 O' 363.416 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LIT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.1 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10 mM Magnesium Acetate' _exptl_crystal_grow.pdbx_pH_range 6.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9787 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALBA BEAMLINE XALOC' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9787 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline XALOC _diffrn_source.pdbx_synchrotron_site ALBA # _reflns.B_iso_Wilson_estimate 5.519 _reflns.entry_id 5LIT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.247 _reflns.d_resolution_low 36.14 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16801 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.27 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 89.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.227 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.965 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.28 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.45 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.29 _refine.B_iso_max ? _refine.B_iso_mean 11.883 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LIT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.25 _refine.ls_d_res_low 36.14 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15741 _refine.ls_number_reflns_R_free 853 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.51 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.12284 _refine.ls_R_factor_R_free 0.16688 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.12053 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model AAATTT _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.044 _refine.pdbx_overall_ESU_R_Free 0.047 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.280 _refine.overall_SU_ML 0.026 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 480 _refine_hist.pdbx_number_atoms_ligand 85 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 730 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 36.14 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.022 0.013 626 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 337 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.518 1.524 940 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.894 3.000 784 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.122 0.200 72 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.038 0.020 373 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 127 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.457 1.019 626 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.456 1.019 627 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.704 1.540 941 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 2.382 11.559 1032 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 1.824 10.395 911 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 13.640 3.000 962 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 20.239 5.000 21 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 6.768 5.000 1046 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.247 _refine_ls_shell.d_res_low 1.279 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_R_work 1122 _refine_ls_shell.percent_reflns_obs 90.67 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.141 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LIT _struct.title 'Structure of the DNA duplex d(AAATTT)2 with the potential antiparasitic drug 6XV at 1.25 A resolution' _struct.pdbx_descriptor ;DNA (5'-D(*AP*AP*AP*TP*TP*T)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LIT _struct_keywords.text 'All AT DNA, Antiparasitic Drug, Minor Groove Binding Drug, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 102 D HOH 207 1_555 ? ? ? ? ? ? ? 2.055 ? metalc2 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 102 D HOH 222 1_555 ? ? ? ? ? ? ? 2.170 ? metalc3 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 102 D HOH 228 1_555 ? ? ? ? ? ? ? 2.151 ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 102 D HOH 231 1_555 ? ? ? ? ? ? ? 1.840 ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? D MG 102 D HOH 246 1_555 ? ? ? ? ? ? ? 1.980 ? metalc6 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 206 1_555 ? ? ? ? ? ? ? 2.042 ? metalc7 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 212 1_555 ? ? ? ? ? ? ? 2.090 ? metalc8 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 220 1_555 ? ? ? ? ? ? ? 2.035 ? metalc9 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 C HOH 215 1_555 ? ? ? ? ? ? ? 2.018 ? metalc10 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 210 1_555 ? ? ? ? ? ? ? 2.075 ? metalc11 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 233 1_555 ? ? ? ? ? ? ? 2.081 ? metalc12 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 208 1_555 ? ? ? ? ? ? ? 2.054 ? metalc13 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 235 1_555 ? ? ? ? ? ? ? 2.100 ? metalc14 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 247 1_555 ? ? ? ? ? ? ? 2.025 ? metalc15 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 209 1_555 ? ? ? ? ? ? ? 2.078 ? metalc16 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 246 1_555 ? ? ? ? ? ? ? 2.120 ? metalc17 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 249 1_555 ? ? ? ? ? ? ? 2.088 ? metalc18 metalc ? ? C DT 4 OP1 ? ? ? 1_555 I MG . MG ? ? A DT 4 B MG 101 1_455 ? ? ? ? ? ? ? 2.057 ? metalc19 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 206 2_754 ? ? ? ? ? ? ? 2.043 ? metalc20 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 212 2_754 ? ? ? ? ? ? ? 2.090 ? metalc21 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? C MG 102 C HOH 220 2_754 ? ? ? ? ? ? ? 2.039 ? metalc22 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 A HOH 219 1_655 ? ? ? ? ? ? ? 1.967 ? metalc23 metalc ? ? I MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 101 A HOH 223 1_655 ? ? ? ? ? ? ? 2.104 ? hydrog1 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 6 N3 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 6 O4 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 5 N3 ? ? A DA 2 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 5 O4 ? ? A DA 2 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 4 N3 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 2 N1 ? ? A DT 5 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 2 N6 ? ? A DT 5 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 1 N1 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 1 N6 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D 6XV 101 ? 13 'binding site for residue 6XV D 101' AC2 Software D MG 102 ? 5 'binding site for residue MG D 102' AC3 Software C 6XV 101 ? 14 'binding site for residue 6XV C 101' AC4 Software C MG 102 ? 6 'binding site for residue MG C 102' AC5 Software B MG 101 ? 6 'binding site for residue MG B 101' AC6 Software B 6XV 102 ? 14 'binding site for residue 6XV B 102' AC7 Software B MG 103 ? 6 'binding site for residue MG B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DA A 2 ? DA D 2 . ? 2_555 ? 2 AC1 13 DA A 3 ? DA D 3 . ? 1_555 ? 3 AC1 13 DA A 3 ? DA D 3 . ? 2_555 ? 4 AC1 13 DT A 4 ? DT D 4 . ? 1_555 ? 5 AC1 13 DT A 4 ? DT D 4 . ? 2_555 ? 6 AC1 13 DT A 5 ? DT D 5 . ? 2_555 ? 7 AC1 13 DT A 5 ? DT D 5 . ? 1_555 ? 8 AC1 13 DT A 6 ? DT D 6 . ? 1_555 ? 9 AC1 13 DT A 6 ? DT D 6 . ? 2_555 ? 10 AC1 13 HOH L . ? HOH D 206 . ? 2_555 ? 11 AC1 13 HOH L . ? HOH D 206 . ? 1_555 ? 12 AC1 13 HOH L . ? HOH D 225 . ? 2_555 ? 13 AC1 13 HOH L . ? HOH D 225 . ? 1_555 ? 14 AC2 5 HOH L . ? HOH D 207 . ? 1_555 ? 15 AC2 5 HOH L . ? HOH D 222 . ? 1_555 ? 16 AC2 5 HOH L . ? HOH D 228 . ? 1_555 ? 17 AC2 5 HOH L . ? HOH D 231 . ? 1_555 ? 18 AC2 5 HOH L . ? HOH D 246 . ? 1_555 ? 19 AC3 14 DA B 2 ? DA C 2 . ? 1_555 ? 20 AC3 14 DA B 2 ? DA C 2 . ? 2_654 ? 21 AC3 14 DA B 3 ? DA C 3 . ? 2_654 ? 22 AC3 14 DA B 3 ? DA C 3 . ? 1_555 ? 23 AC3 14 DT B 4 ? DT C 4 . ? 1_555 ? 24 AC3 14 DT B 4 ? DT C 4 . ? 2_654 ? 25 AC3 14 DT B 5 ? DT C 5 . ? 1_555 ? 26 AC3 14 DT B 5 ? DT C 5 . ? 2_654 ? 27 AC3 14 DT B 6 ? DT C 6 . ? 2_654 ? 28 AC3 14 DT B 6 ? DT C 6 . ? 1_555 ? 29 AC3 14 HOH M . ? HOH C 209 . ? 2_654 ? 30 AC3 14 HOH M . ? HOH C 209 . ? 1_555 ? 31 AC3 14 HOH L . ? HOH D 238 . ? 4_544 ? 32 AC3 14 HOH L . ? HOH D 238 . ? 3_544 ? 33 AC4 6 HOH M . ? HOH C 206 . ? 1_555 ? 34 AC4 6 HOH M . ? HOH C 206 . ? 2_754 ? 35 AC4 6 HOH M . ? HOH C 212 . ? 1_555 ? 36 AC4 6 HOH M . ? HOH C 212 . ? 2_754 ? 37 AC4 6 HOH M . ? HOH C 220 . ? 2_754 ? 38 AC4 6 HOH M . ? HOH C 220 . ? 1_555 ? 39 AC5 6 DT C 4 ? DT A 4 . ? 1_655 ? 40 AC5 6 HOH N . ? HOH A 219 . ? 1_655 ? 41 AC5 6 HOH N . ? HOH A 223 . ? 1_655 ? 42 AC5 6 HOH O . ? HOH B 210 . ? 1_555 ? 43 AC5 6 HOH O . ? HOH B 233 . ? 1_555 ? 44 AC5 6 HOH M . ? HOH C 215 . ? 1_555 ? 45 AC6 14 DA C 2 ? DA A 2 . ? 4_554 ? 46 AC6 14 DA C 3 ? DA A 3 . ? 1_555 ? 47 AC6 14 DT C 4 ? DT A 4 . ? 1_555 ? 48 AC6 14 DT C 5 ? DT A 5 . ? 1_555 ? 49 AC6 14 DT C 6 ? DT A 6 . ? 1_555 ? 50 AC6 14 DA D 2 ? DA B 2 . ? 1_555 ? 51 AC6 14 DA D 3 ? DA B 3 . ? 1_455 ? 52 AC6 14 DA D 3 ? DA B 3 . ? 1_555 ? 53 AC6 14 DT D 4 ? DT B 4 . ? 1_555 ? 54 AC6 14 DT D 5 ? DT B 5 . ? 1_555 ? 55 AC6 14 DT D 6 ? DT B 6 . ? 1_555 ? 56 AC6 14 HOH O . ? HOH B 204 . ? 1_555 ? 57 AC6 14 HOH O . ? HOH B 217 . ? 1_555 ? 58 AC6 14 HOH O . ? HOH B 225 . ? 1_555 ? 59 AC7 6 HOH O . ? HOH B 208 . ? 1_555 ? 60 AC7 6 HOH O . ? HOH B 209 . ? 1_555 ? 61 AC7 6 HOH O . ? HOH B 235 . ? 1_555 ? 62 AC7 6 HOH O . ? HOH B 246 . ? 1_555 ? 63 AC7 6 HOH O . ? HOH B 247 . ? 1_555 ? 64 AC7 6 HOH O . ? HOH B 249 . ? 1_555 ? # _atom_sites.entry_id 5LIT _atom_sites.fract_transf_matrix[1][1] 0.044783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002870 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024845 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013836 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA D . n A 1 2 DA 2 2 2 DA DA D . n A 1 3 DA 3 3 3 DA DA D . n A 1 4 DT 4 4 4 DT DT D . n A 1 5 DT 5 5 5 DT DT D . n A 1 6 DT 6 6 6 DT DT D . n B 1 1 DA 1 1 1 DA DA C . n B 1 2 DA 2 2 2 DA DA C . n B 1 3 DA 3 3 3 DA DA C . n B 1 4 DT 4 4 4 DT DT C . n B 1 5 DT 5 5 5 DT DT C . n B 1 6 DT 6 6 6 DT DT C . n C 1 1 DA 1 1 1 DA DA A . n C 1 2 DA 2 2 2 DA DA A . n C 1 3 DA 3 3 3 DA DA A . n C 1 4 DT 4 4 4 DT DT A . n C 1 5 DT 5 5 5 DT DT A . n C 1 6 DT 6 6 6 DT DT A . n D 1 1 DA 1 1 1 DA DA B . n D 1 2 DA 2 2 2 DA DA B . n D 1 3 DA 3 3 3 DA DA B . n D 1 4 DT 4 4 4 DT DT B . n D 1 5 DT 5 5 5 DT DT B . n D 1 6 DT 6 6 6 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6XV 1 101 1 6XV FR6 D . F 3 MG 1 102 4 MG MG D . G 2 6XV 1 101 1 6XV FR6 C . H 3 MG 1 102 3 MG MG C . I 3 MG 1 101 2 MG MG B . J 2 6XV 1 102 1 6XV FR6 B . K 3 MG 1 103 1 MG MG B . L 4 HOH 1 201 98 HOH HOH D . L 4 HOH 2 202 196 HOH HOH D . L 4 HOH 3 203 138 HOH HOH D . L 4 HOH 4 204 141 HOH HOH D . L 4 HOH 5 205 53 HOH HOH D . L 4 HOH 6 206 41 HOH HOH D . L 4 HOH 7 207 62 HOH HOH D . L 4 HOH 8 208 26 HOH HOH D . L 4 HOH 9 209 55 HOH HOH D . L 4 HOH 10 210 144 HOH HOH D . L 4 HOH 11 211 221 HOH HOH D . L 4 HOH 12 212 56 HOH HOH D . L 4 HOH 13 213 27 HOH HOH D . L 4 HOH 14 214 80 HOH HOH D . L 4 HOH 15 215 99 HOH HOH D . L 4 HOH 16 216 43 HOH HOH D . L 4 HOH 17 217 143 HOH HOH D . L 4 HOH 18 218 34 HOH HOH D . L 4 HOH 19 219 142 HOH HOH D . L 4 HOH 20 220 36 HOH HOH D . L 4 HOH 21 221 197 HOH HOH D . L 4 HOH 22 222 83 HOH HOH D . L 4 HOH 23 223 29 HOH HOH D . L 4 HOH 24 224 181 HOH HOH D . L 4 HOH 25 225 220 HOH HOH D . L 4 HOH 26 226 6 HOH HOH D . L 4 HOH 27 227 1 HOH HOH D . L 4 HOH 28 228 84 HOH HOH D . L 4 HOH 29 229 136 HOH HOH D . L 4 HOH 30 230 100 HOH HOH D . L 4 HOH 31 231 94 HOH HOH D . L 4 HOH 32 232 97 HOH HOH D . L 4 HOH 33 233 77 HOH HOH D . L 4 HOH 34 234 195 HOH HOH D . L 4 HOH 35 235 69 HOH HOH D . L 4 HOH 36 236 17 HOH HOH D . L 4 HOH 37 237 58 HOH HOH D . L 4 HOH 38 238 139 HOH HOH D . L 4 HOH 39 239 133 HOH HOH D . L 4 HOH 40 240 135 HOH HOH D . L 4 HOH 41 241 95 HOH HOH D . L 4 HOH 42 242 140 HOH HOH D . L 4 HOH 43 243 61 HOH HOH D . L 4 HOH 44 244 137 HOH HOH D . L 4 HOH 45 245 194 HOH HOH D . L 4 HOH 46 246 159 HOH HOH D . L 4 HOH 47 247 51 HOH HOH D . L 4 HOH 48 248 101 HOH HOH D . M 4 HOH 1 201 256 HOH HOH C . M 4 HOH 2 202 304 HOH HOH C . M 4 HOH 3 203 253 HOH HOH C . M 4 HOH 4 204 307 HOH HOH C . M 4 HOH 5 205 266 HOH HOH C . M 4 HOH 6 206 291 HOH HOH C . M 4 HOH 7 207 257 HOH HOH C . M 4 HOH 8 208 300 HOH HOH C . M 4 HOH 9 209 297 HOH HOH C . M 4 HOH 10 210 287 HOH HOH C . M 4 HOH 11 211 251 HOH HOH C . M 4 HOH 12 212 302 HOH HOH C . M 4 HOH 13 213 303 HOH HOH C . M 4 HOH 14 214 294 HOH HOH C . M 4 HOH 15 215 296 HOH HOH C . M 4 HOH 16 216 305 HOH HOH C . M 4 HOH 17 217 252 HOH HOH C . M 4 HOH 18 218 301 HOH HOH C . M 4 HOH 19 219 250 HOH HOH C . M 4 HOH 20 220 299 HOH HOH C . M 4 HOH 21 221 275 HOH HOH C . M 4 HOH 22 222 255 HOH HOH C . M 4 HOH 23 223 254 HOH HOH C . M 4 HOH 24 224 306 HOH HOH C . M 4 HOH 25 225 258 HOH HOH C . N 4 HOH 1 201 146 HOH HOH A . N 4 HOH 2 202 132 HOH HOH A . N 4 HOH 3 203 129 HOH HOH A . N 4 HOH 4 204 116 HOH HOH A . N 4 HOH 5 205 57 HOH HOH A . N 4 HOH 6 206 19 HOH HOH A . N 4 HOH 7 207 33 HOH HOH A . N 4 HOH 8 208 44 HOH HOH A . N 4 HOH 9 209 54 HOH HOH A . N 4 HOH 10 210 247 HOH HOH A . N 4 HOH 11 211 9 HOH HOH A . N 4 HOH 12 212 212 HOH HOH A . N 4 HOH 13 213 92 HOH HOH A . N 4 HOH 14 214 10 HOH HOH A . N 4 HOH 15 215 30 HOH HOH A . N 4 HOH 16 216 171 HOH HOH A . N 4 HOH 17 217 75 HOH HOH A . N 4 HOH 18 218 32 HOH HOH A . N 4 HOH 19 219 23 HOH HOH A . N 4 HOH 20 220 281 HOH HOH A . N 4 HOH 21 221 170 HOH HOH A . N 4 HOH 22 222 4 HOH HOH A . N 4 HOH 23 223 39 HOH HOH A . N 4 HOH 24 224 2 HOH HOH A . N 4 HOH 25 225 130 HOH HOH A . N 4 HOH 26 226 38 HOH HOH A . N 4 HOH 27 227 176 HOH HOH A . N 4 HOH 28 228 175 HOH HOH A . N 4 HOH 29 229 192 HOH HOH A . N 4 HOH 30 230 93 HOH HOH A . N 4 HOH 31 231 25 HOH HOH A . N 4 HOH 32 232 115 HOH HOH A . N 4 HOH 33 233 127 HOH HOH A . N 4 HOH 34 234 66 HOH HOH A . N 4 HOH 35 235 117 HOH HOH A . N 4 HOH 36 236 166 HOH HOH A . N 4 HOH 37 237 63 HOH HOH A . N 4 HOH 38 238 96 HOH HOH A . N 4 HOH 39 239 172 HOH HOH A . N 4 HOH 40 240 125 HOH HOH A . N 4 HOH 41 241 91 HOH HOH A . N 4 HOH 42 242 232 HOH HOH A . O 4 HOH 1 201 112 HOH HOH B . O 4 HOH 2 202 123 HOH HOH B . O 4 HOH 3 203 82 HOH HOH B . O 4 HOH 4 204 151 HOH HOH B . O 4 HOH 5 205 277 HOH HOH B . O 4 HOH 6 206 18 HOH HOH B . O 4 HOH 7 207 46 HOH HOH B . O 4 HOH 8 208 14 HOH HOH B . O 4 HOH 9 209 31 HOH HOH B . O 4 HOH 10 210 35 HOH HOH B . O 4 HOH 11 211 52 HOH HOH B . O 4 HOH 12 212 65 HOH HOH B . O 4 HOH 13 213 216 HOH HOH B . O 4 HOH 14 214 85 HOH HOH B . O 4 HOH 15 215 158 HOH HOH B . O 4 HOH 16 216 47 HOH HOH B . O 4 HOH 17 217 186 HOH HOH B . O 4 HOH 18 218 120 HOH HOH B . O 4 HOH 19 219 121 HOH HOH B . O 4 HOH 20 220 15 HOH HOH B . O 4 HOH 21 221 89 HOH HOH B . O 4 HOH 22 222 88 HOH HOH B . O 4 HOH 23 223 3 HOH HOH B . O 4 HOH 24 224 76 HOH HOH B . O 4 HOH 25 225 90 HOH HOH B . O 4 HOH 26 226 45 HOH HOH B . O 4 HOH 27 227 184 HOH HOH B . O 4 HOH 28 228 150 HOH HOH B . O 4 HOH 29 229 187 HOH HOH B . O 4 HOH 30 230 149 HOH HOH B . O 4 HOH 31 231 20 HOH HOH B . O 4 HOH 32 232 214 HOH HOH B . O 4 HOH 33 233 22 HOH HOH B . O 4 HOH 34 234 49 HOH HOH B . O 4 HOH 35 235 64 HOH HOH B . O 4 HOH 36 236 119 HOH HOH B . O 4 HOH 37 237 279 HOH HOH B . O 4 HOH 38 238 68 HOH HOH B . O 4 HOH 39 239 118 HOH HOH B . O 4 HOH 40 240 280 HOH HOH B . O 4 HOH 41 241 131 HOH HOH B . O 4 HOH 42 242 122 HOH HOH B . O 4 HOH 43 243 217 HOH HOH B . O 4 HOH 44 244 183 HOH HOH B . O 4 HOH 45 245 148 HOH HOH B . O 4 HOH 46 246 11 HOH HOH B . O 4 HOH 47 247 7 HOH HOH B . O 4 HOH 48 248 218 HOH HOH B . O 4 HOH 49 249 8 HOH HOH B . O 4 HOH 50 250 219 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F,L 1 2 A,E,F,L 2 1 B,G,H,M 2 3 B,G,H,M 3 1 C,D,I,J,K,N,O # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_654 -x+1,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 26.9657811686 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -72.2744800186 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? L HOH . ? D HOH 207 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 222 ? 1_555 98.4 ? 2 O ? L HOH . ? D HOH 207 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 228 ? 1_555 85.9 ? 3 O ? L HOH . ? D HOH 222 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 228 ? 1_555 82.5 ? 4 O ? L HOH . ? D HOH 207 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 231 ? 1_555 83.7 ? 5 O ? L HOH . ? D HOH 222 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 231 ? 1_555 89.6 ? 6 O ? L HOH . ? D HOH 228 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 231 ? 1_555 165.9 ? 7 O ? L HOH . ? D HOH 207 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 246 ? 1_555 100.4 ? 8 O ? L HOH . ? D HOH 222 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 246 ? 1_555 159.2 ? 9 O ? L HOH . ? D HOH 228 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 246 ? 1_555 107.4 ? 10 O ? L HOH . ? D HOH 231 ? 1_555 MG ? F MG . ? D MG 102 ? 1_555 O ? L HOH . ? D HOH 246 ? 1_555 84.0 ? 11 O ? M HOH . ? C HOH 206 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 212 ? 1_555 91.3 ? 12 O ? M HOH . ? C HOH 206 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 1_555 91.4 ? 13 O ? M HOH . ? C HOH 212 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 1_555 89.9 ? 14 O ? M HOH . ? C HOH 206 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 206 ? 2_754 89.2 ? 15 O ? M HOH . ? C HOH 212 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 206 ? 2_754 179.4 ? 16 O ? M HOH . ? C HOH 220 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 206 ? 2_754 90.5 ? 17 O ? M HOH . ? C HOH 206 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 212 ? 2_754 179.5 ? 18 O ? M HOH . ? C HOH 212 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 212 ? 2_754 88.3 ? 19 O ? M HOH . ? C HOH 220 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 212 ? 2_754 88.4 ? 20 O ? M HOH . ? C HOH 206 ? 2_754 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 212 ? 2_754 91.3 ? 21 O ? M HOH . ? C HOH 206 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 2_754 90.4 ? 22 O ? M HOH . ? C HOH 212 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 2_754 88.3 ? 23 O ? M HOH . ? C HOH 220 ? 1_555 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 2_754 177.5 ? 24 O ? M HOH . ? C HOH 206 ? 2_754 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 2_754 91.3 ? 25 O ? M HOH . ? C HOH 212 ? 2_754 MG ? H MG . ? C MG 102 ? 1_555 O ? M HOH . ? C HOH 220 ? 2_754 89.8 ? 26 O ? M HOH . ? C HOH 215 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 210 ? 1_555 87.6 ? 27 O ? M HOH . ? C HOH 215 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 233 ? 1_555 89.3 ? 28 O ? O HOH . ? B HOH 210 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 233 ? 1_555 84.6 ? 29 O ? M HOH . ? C HOH 215 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 OP1 ? C DT 4 ? A DT 4 ? 1_555 56.6 ? 30 O ? O HOH . ? B HOH 210 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 OP1 ? C DT 4 ? A DT 4 ? 1_555 34.2 ? 31 O ? O HOH . ? B HOH 233 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 OP1 ? C DT 4 ? A DT 4 ? 1_555 72.4 ? 32 O ? M HOH . ? C HOH 215 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_655 91.7 ? 33 O ? O HOH . ? B HOH 210 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_655 98.1 ? 34 O ? O HOH . ? B HOH 233 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_655 177.2 ? 35 OP1 ? C DT 4 ? A DT 4 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_655 110.3 ? 36 O ? M HOH . ? C HOH 215 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 223 ? 1_655 90.5 ? 37 O ? O HOH . ? B HOH 210 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 223 ? 1_655 173.8 ? 38 O ? O HOH . ? B HOH 233 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 223 ? 1_655 89.5 ? 39 OP1 ? C DT 4 ? A DT 4 ? 1_555 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 223 ? 1_655 141.5 ? 40 O ? N HOH . ? A HOH 219 ? 1_655 MG ? I MG . ? B MG 101 ? 1_555 O ? N HOH . ? A HOH 223 ? 1_655 87.8 ? 41 O ? O HOH . ? B HOH 208 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 235 ? 1_555 87.0 ? 42 O ? O HOH . ? B HOH 208 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 88.4 ? 43 O ? O HOH . ? B HOH 235 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 247 ? 1_555 92.6 ? 44 O ? O HOH . ? B HOH 208 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 209 ? 1_555 90.6 ? 45 O ? O HOH . ? B HOH 235 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 209 ? 1_555 90.8 ? 46 O ? O HOH . ? B HOH 247 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 209 ? 1_555 176.4 ? 47 O ? O HOH . ? B HOH 208 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 246 ? 1_555 90.0 ? 48 O ? O HOH . ? B HOH 235 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 246 ? 1_555 176.5 ? 49 O ? O HOH . ? B HOH 247 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 246 ? 1_555 89.1 ? 50 O ? O HOH . ? B HOH 209 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 246 ? 1_555 87.5 ? 51 O ? O HOH . ? B HOH 208 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 249 ? 1_555 179.2 ? 52 O ? O HOH . ? B HOH 235 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 249 ? 1_555 92.8 ? 53 O ? O HOH . ? B HOH 247 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 249 ? 1_555 90.9 ? 54 O ? O HOH . ? B HOH 209 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 249 ? 1_555 90.1 ? 55 O ? O HOH . ? B HOH 246 ? 1_555 MG ? K MG . ? B MG 103 ? 1_555 O ? O HOH . ? B HOH 249 ? 1_555 90.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-14 2 'Structure model' 1 1 2017-06-21 3 'Structure model' 1 2 2017-06-28 4 'Structure model' 1 3 2017-07-05 5 'Structure model' 1 4 2017-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation 3 2 'Structure model' citation_author 4 3 'Structure model' audit_author 5 3 'Structure model' citation_author 6 3 'Structure model' struct 7 4 'Structure model' citation 8 4 'Structure model' citation_author 9 5 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_audit_author.name' 3 3 'Structure model' '_audit_author.pdbx_ordinal' 4 3 'Structure model' '_citation_author.name' 5 3 'Structure model' '_struct.title' 6 4 'Structure model' '_citation.country' 7 4 'Structure model' '_citation.journal_id_ASTM' 8 4 'Structure model' '_citation.journal_id_CSD' 9 4 'Structure model' '_citation.pdbx_database_id_DOI' 10 4 'Structure model' '_citation.pdbx_database_id_PubMed' 11 4 'Structure model' '_citation.title' 12 4 'Structure model' '_citation_author.name' 13 5 'Structure model' '_citation.journal_volume' 14 5 'Structure model' '_citation.page_first' 15 5 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 7.2.1 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.25 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 D DT 6 ? ? C5 D DT 6 ? ? 1.502 1.445 0.057 0.009 N 2 1 "C3'" B DT 6 ? ? "C2'" B DT 6 ? ? 1.467 1.516 -0.049 0.008 N 3 1 N3 B DT 6 ? ? C4 B DT 6 ? ? 1.330 1.382 -0.052 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" C DA 2 ? ? P C DA 2 ? ? OP2 C DA 2 ? ? 91.06 105.70 -14.64 0.90 N 2 1 "O5'" C DA 2 ? ? "C5'" C DA 2 ? ? "C4'" C DA 2 ? ? 103.94 109.40 -5.46 0.80 N 3 1 "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? "C1'" A DA 2 ? ? 97.17 102.40 -5.23 0.80 N 4 1 "O4'" B DT 4 ? ? "C4'" B DT 4 ? ? "C3'" B DT 4 ? ? 109.90 106.00 3.90 0.60 N 5 1 "O4'" B DT 6 ? ? "C4'" B DT 6 ? ? "C3'" B DT 6 ? ? 102.09 104.50 -2.41 0.40 N 6 1 N3 B DT 6 ? ? C4 B DT 6 ? ? C5 B DT 6 ? ? 119.76 115.20 4.56 0.60 N 7 1 C5 B DT 6 ? ? C4 B DT 6 ? ? O4 B DT 6 ? ? 119.73 124.90 -5.17 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.068 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? D HOH 247 ? 6.28 . 2 1 O ? D HOH 248 ? 6.33 . 3 1 O ? C HOH 225 ? 6.92 . 4 1 O ? A HOH 240 ? 6.40 . 5 1 O ? A HOH 241 ? 6.60 . 6 1 O ? A HOH 242 ? 6.74 . # _ndb_struct_conf_na.entry_id 5LIT _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 1 1_555 D DT 6 1_555 0.036 -0.149 -0.227 10.423 -13.616 0.993 1 A_DA1:DT6_B A 1 ? B 6 ? 20 1 1 C DA 2 1_555 D DT 5 1_555 0.033 -0.083 0.016 12.763 -9.715 1.222 2 A_DA2:DT5_B A 2 ? B 5 ? 20 1 1 C DA 3 1_555 D DT 4 1_555 0.148 -0.116 -0.050 6.921 -23.677 1.249 3 A_DA3:DT4_B A 3 ? B 4 ? 20 1 1 C DT 4 1_555 D DA 3 1_555 -0.055 -0.099 -0.139 3.087 -19.680 9.207 4 A_DT4:DA3_B A 4 ? B 3 ? 20 1 1 C DT 5 1_555 D DA 2 1_555 -0.123 -0.134 -0.059 -3.713 -13.515 1.617 5 A_DT5:DA2_B A 5 ? B 2 ? 20 1 1 C DT 6 1_555 D DA 1 1_555 0.054 -0.123 0.026 11.020 -9.376 -0.120 6 A_DT6:DA1_B A 6 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 1 1_555 D DT 6 1_555 C DA 2 1_555 D DT 5 1_555 0.473 -0.185 3.160 -1.041 -0.226 32.467 -0.293 -1.021 3.145 -0.404 1.861 32.484 1 AA_DA1DA2:DT5DT6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 C DA 2 1_555 D DT 5 1_555 C DA 3 1_555 D DT 4 1_555 -0.838 0.104 3.346 -2.748 3.074 39.169 -0.222 0.908 3.393 4.570 4.086 39.377 2 AA_DA2DA3:DT4DT5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 C DA 3 1_555 D DT 4 1_555 C DT 4 1_555 D DA 3 1_555 0.718 -0.566 3.249 1.460 1.424 32.464 -1.258 -1.028 3.250 2.545 -2.608 32.526 3 AA_DA3DT4:DA3DT4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 C DT 4 1_555 D DA 3 1_555 C DT 5 1_555 D DA 2 1_555 0.161 -0.178 3.328 1.837 5.128 38.584 -0.898 -0.016 3.283 7.713 -2.764 38.952 4 AA_DT4DT5:DA2DA3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 C DT 5 1_555 D DA 2 1_555 C DT 6 1_555 D DA 1 1_555 -0.185 -0.019 3.085 -3.577 6.536 34.452 -0.950 -0.197 3.034 10.877 5.954 35.224 5 AA_DT5DT6:DA1DA2_BB A 5 ? B 2 ? A 6 ? B 1 ? # _pdbx_audit_support.funding_organization 'Government of Catalonia' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number '2015 SGR 080' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-((4,5-dihydro-1H-imidazol-2-yl)amino)-N-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzamide dihydrochloride' 6XV 3 'MAGNESIUM ION' MG 4 water HOH #