HEADER VIRAL PROTEIN 20-JUL-16 5LJX TITLE STRUCTURE OF HANTAVIRUS ENVELOPE GLYCOPROTEIN GC IN POSTFUSION TITLE 2 CONFORMATION IN PRESENCE OF 600 MM KCL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPMENT POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOPROTEIN PRECURSOR,M POLYPROTEIN, GLYCOPROTEIN GC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HANTAAN VIRUS; SOURCE 3 ORGANISM_TAXID: 11599; SOURCE 4 GENE: GP; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: S2 CELLS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMT KEYWDS HANTAVIRUS, GLYCOPROTEIN, VIRAL FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.GUARDADO-CALVO,F.A.REY REVDAT 4 10-JAN-24 5LJX 1 HETSYN LINK REVDAT 3 29-JUL-20 5LJX 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-NOV-16 5LJX 1 JRNL REVDAT 1 14-SEP-16 5LJX 0 JRNL AUTH P.GUARDADO-CALVO,E.A.BIGNON,E.STETTNER,S.A.JEFFERS, JRNL AUTH 2 J.PEREZ-VARGAS,G.PEHAU-ARNAUDET,M.A.TORTORICI,J.L.JESTIN, JRNL AUTH 3 P.ENGLAND,N.D.TISCHLER,F.A.REY JRNL TITL MECHANISTIC INSIGHT INTO BUNYAVIRUS-INDUCED MEMBRANE FUSION JRNL TITL 2 FROM STRUCTURE-FUNCTION ANALYSES OF THE HANTAVIRUS ENVELOPE JRNL TITL 3 GLYCOPROTEIN GC. JRNL REF PLOS PATHOG. V. 12 05813 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27783711 JRNL DOI 10.1371/JOURNAL.PPAT.1005813 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 106967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 5251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5050 - 4.3480 1.00 3317 254 0.1933 0.2053 REMARK 3 2 4.3480 - 3.4519 1.00 3360 191 0.1851 0.1801 REMARK 3 3 3.4519 - 3.0157 0.99 3443 120 0.1895 0.2034 REMARK 3 4 3.0157 - 2.7401 0.99 3418 146 0.2018 0.1987 REMARK 3 5 2.7401 - 2.5438 1.00 3402 181 0.2032 0.2456 REMARK 3 6 2.5438 - 2.3938 1.00 3395 151 0.1946 0.2203 REMARK 3 7 2.3938 - 2.2739 0.99 3351 182 0.1891 0.2066 REMARK 3 8 2.2739 - 2.1750 0.99 3387 205 0.1762 0.1879 REMARK 3 9 2.1750 - 2.0912 1.00 3377 179 0.1765 0.2079 REMARK 3 10 2.0912 - 2.0191 1.00 3394 154 0.1677 0.1960 REMARK 3 11 2.0191 - 1.9560 1.00 3404 191 0.1674 0.2109 REMARK 3 12 1.9560 - 1.9001 1.00 3409 176 0.1667 0.2084 REMARK 3 13 1.9001 - 1.8500 1.00 3382 167 0.1669 0.1964 REMARK 3 14 1.8500 - 1.8049 0.99 3379 192 0.1733 0.2150 REMARK 3 15 1.8049 - 1.7639 0.99 3359 177 0.1658 0.1915 REMARK 3 16 1.7639 - 1.7263 1.00 3354 201 0.1631 0.2006 REMARK 3 17 1.7263 - 1.6918 1.00 3424 148 0.1597 0.1912 REMARK 3 18 1.6918 - 1.6599 1.00 3385 179 0.1601 0.2134 REMARK 3 19 1.6599 - 1.6302 1.00 3349 208 0.1654 0.2214 REMARK 3 20 1.6302 - 1.6026 1.00 3418 203 0.1709 0.2335 REMARK 3 21 1.6026 - 1.5767 1.00 3360 188 0.1688 0.2291 REMARK 3 22 1.5767 - 1.5525 1.00 3438 143 0.1725 0.2186 REMARK 3 23 1.5525 - 1.5296 1.00 3405 124 0.1822 0.2153 REMARK 3 24 1.5296 - 1.5081 0.98 3391 139 0.1874 0.2375 REMARK 3 25 1.5081 - 1.4877 1.00 3382 185 0.1932 0.2342 REMARK 3 26 1.4877 - 1.4684 1.00 3370 205 0.1982 0.2521 REMARK 3 27 1.4684 - 1.4500 1.00 3397 184 0.2061 0.2433 REMARK 3 28 1.4500 - 1.4326 1.00 3440 153 0.2218 0.2746 REMARK 3 29 1.4326 - 1.4159 1.00 3381 159 0.2215 0.2683 REMARK 3 30 1.4159 - 1.4000 1.00 3445 166 0.2317 0.2776 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3161 REMARK 3 ANGLE : 1.279 4277 REMARK 3 CHIRALITY : 0.094 474 REMARK 3 PLANARITY : 0.006 546 REMARK 3 DIHEDRAL : 13.263 1144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976251 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 37.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: : 0.1M MES 6.5, 10.77%(V/V) PEG 8000, REMARK 280 7% (V/V) GLYCEROL, 600 MM KCL, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.52400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.90210 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.50400 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.52400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.90210 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.50400 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.52400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.90210 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.50400 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.80419 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 85.00800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.80419 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 85.00800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.80419 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.00800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 53.52400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.70629 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -53.52400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 92.70629 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 884 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 892 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 907 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 929 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 936 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 937 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 47 REMARK 465 GLU A 48 REMARK 465 GLU A 49 REMARK 465 HIS A 86 REMARK 465 CYS A 87 REMARK 465 TYR A 88 REMARK 465 GLY A 89 REMARK 465 ALA A 90 REMARK 465 CYS A 91 REMARK 465 THR A 92 REMARK 465 THR A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 GLY A 116 REMARK 465 CYS A 117 REMARK 465 ASN A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 ASP A 121 REMARK 465 CYS A 122 REMARK 465 PRO A 123 REMARK 465 GLY A 124 REMARK 465 VAL A 125 REMARK 465 GLY A 126 REMARK 465 THR A 127 REMARK 465 CYS A 248 REMARK 465 ASN A 249 REMARK 465 PHE A 250 REMARK 465 ASP A 416 REMARK 465 LYS A 417 REMARK 465 VAL A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 SER A 422 REMARK 465 GLU A 423 REMARK 465 ILE A 424 REMARK 465 GLU A 425 REMARK 465 ASN A 426 REMARK 465 SER A 427 REMARK 465 LYS A 428 REMARK 465 VAL A 429 REMARK 465 TYR A 430 REMARK 465 ASP A 431 REMARK 465 ASP A 432 REMARK 465 GLY A 433 REMARK 465 ALA A 434 REMARK 465 PRO A 435 REMARK 465 GLN A 436 REMARK 465 CYS A 437 REMARK 465 GLY A 438 REMARK 465 ILE A 439 REMARK 465 LYS A 440 REMARK 465 CYS A 441 REMARK 465 TRP A 442 REMARK 465 PHE A 443 REMARK 465 VAL A 444 REMARK 465 LYS A 445 REMARK 465 SER A 446 REMARK 465 GLY A 447 REMARK 465 GLU A 448 REMARK 465 TRP A 449 REMARK 465 ILE A 450 REMARK 465 SER A 451 REMARK 465 GLY A 452 REMARK 465 ILE A 453 REMARK 465 PHE A 454 REMARK 465 SER A 455 REMARK 465 GLY A 456 REMARK 465 ASN A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 SER A 460 REMARK 465 ASP A 461 REMARK 465 ASP A 462 REMARK 465 ASP A 463 REMARK 465 ASP A 464 REMARK 465 LYS A 465 REMARK 465 ALA A 466 REMARK 465 GLY A 467 REMARK 465 TRP A 468 REMARK 465 SER A 469 REMARK 465 HIS A 470 REMARK 465 PRO A 471 REMARK 465 GLN A 472 REMARK 465 PHE A 473 REMARK 465 GLU A 474 REMARK 465 LYS A 475 REMARK 465 GLY A 476 REMARK 465 GLY A 477 REMARK 465 GLY A 478 REMARK 465 SER A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 GLY A 482 REMARK 465 SER A 483 REMARK 465 GLY A 484 REMARK 465 GLY A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 TRP A 488 REMARK 465 SER A 489 REMARK 465 HIS A 490 REMARK 465 PRO A 491 REMARK 465 GLN A 492 REMARK 465 PHE A 493 REMARK 465 GLU A 494 REMARK 465 LYS A 495 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 46 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 94 107.07 92.18 REMARK 500 TYR A 111 138.53 78.09 REMARK 500 PRO A 203 79.98 -53.28 REMARK 500 LEU A 204 155.02 -46.23 REMARK 500 GLU A 205 156.84 94.95 REMARK 500 THR A 216 -79.15 -127.46 REMARK 500 ARG A 231 47.37 -147.65 REMARK 500 ASP A 232 -37.34 71.74 REMARK 500 THR A 252 -126.28 -139.62 REMARK 500 THR A 283 61.16 39.43 REMARK 500 THR A 283 59.49 39.43 REMARK 500 ASP A 311 -78.86 -109.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 204 GLU A 205 -149.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 964 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 504 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 105 OH REMARK 620 2 PHE A 240 O 116.4 REMARK 620 3 PRO A 241 O 152.4 82.5 REMARK 620 4 GLY A 242 O 93.8 89.4 65.0 REMARK 620 5 ASP A 259 O 117.7 75.0 44.7 24.4 REMARK 620 6 HOH A 883 O 80.4 71.5 126.3 154.5 146.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 243 OG REMARK 620 2 SER A 243 OG 0.0 REMARK 620 3 HOH A 729 O 105.1 105.1 REMARK 620 4 HOH A 729 O 80.7 80.7 93.5 REMARK 620 N 1 2 3 DBREF 5LJX A 1 457 UNP P08668 GP_HANTV 649 1105 SEQADV 5LJX HIS A 115 UNP P08668 TRP 763 CONFLICT SEQADV 5LJX GLY A 458 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 459 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 460 UNP P08668 EXPRESSION TAG SEQADV 5LJX ASP A 461 UNP P08668 EXPRESSION TAG SEQADV 5LJX ASP A 462 UNP P08668 EXPRESSION TAG SEQADV 5LJX ASP A 463 UNP P08668 EXPRESSION TAG SEQADV 5LJX ASP A 464 UNP P08668 EXPRESSION TAG SEQADV 5LJX LYS A 465 UNP P08668 EXPRESSION TAG SEQADV 5LJX ALA A 466 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 467 UNP P08668 EXPRESSION TAG SEQADV 5LJX TRP A 468 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 469 UNP P08668 EXPRESSION TAG SEQADV 5LJX HIS A 470 UNP P08668 EXPRESSION TAG SEQADV 5LJX PRO A 471 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLN A 472 UNP P08668 EXPRESSION TAG SEQADV 5LJX PHE A 473 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLU A 474 UNP P08668 EXPRESSION TAG SEQADV 5LJX LYS A 475 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 476 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 477 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 478 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 479 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 480 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 481 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 482 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 483 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 484 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 485 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLY A 486 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 487 UNP P08668 EXPRESSION TAG SEQADV 5LJX TRP A 488 UNP P08668 EXPRESSION TAG SEQADV 5LJX SER A 489 UNP P08668 EXPRESSION TAG SEQADV 5LJX HIS A 490 UNP P08668 EXPRESSION TAG SEQADV 5LJX PRO A 491 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLN A 492 UNP P08668 EXPRESSION TAG SEQADV 5LJX PHE A 493 UNP P08668 EXPRESSION TAG SEQADV 5LJX GLU A 494 UNP P08668 EXPRESSION TAG SEQADV 5LJX LYS A 495 UNP P08668 EXPRESSION TAG SEQRES 1 A 495 SER GLU THR PRO LEU THR PRO VAL TRP ASN ASP ASN ALA SEQRES 2 A 495 HIS GLY VAL GLY SER VAL PRO MET HIS THR ASP LEU GLU SEQRES 3 A 495 LEU ASP PHE SER LEU THR SER SER SER LYS TYR THR TYR SEQRES 4 A 495 ARG ARG LYS LEU THR ASN PRO LEU GLU GLU ALA GLN SER SEQRES 5 A 495 ILE ASP LEU HIS ILE GLU ILE GLU GLU GLN THR ILE GLY SEQRES 6 A 495 VAL ASP VAL HIS ALA LEU GLY HIS TRP PHE ASP GLY ARG SEQRES 7 A 495 LEU ASN LEU LYS THR SER PHE HIS CYS TYR GLY ALA CYS SEQRES 8 A 495 THR LYS TYR GLU TYR PRO TRP HIS THR ALA LYS CYS HIS SEQRES 9 A 495 TYR GLU ARG ASP TYR GLN TYR GLU THR SER HIS GLY CYS SEQRES 10 A 495 ASN PRO SER ASP CYS PRO GLY VAL GLY THR GLY CYS THR SEQRES 11 A 495 ALA CYS GLY LEU TYR LEU ASP GLN LEU LYS PRO VAL GLY SEQRES 12 A 495 SER ALA TYR LYS ILE ILE THR ILE ARG TYR SER ARG ARG SEQRES 13 A 495 VAL CYS VAL GLN PHE GLY GLU GLU ASN LEU CYS LYS ILE SEQRES 14 A 495 ILE ASP MET ASN ASP CYS PHE VAL SER ARG HIS VAL LYS SEQRES 15 A 495 VAL CYS ILE ILE GLY THR VAL SER LYS PHE SER GLN GLY SEQRES 16 A 495 ASP THR LEU LEU PHE PHE GLY PRO LEU GLU GLY GLY GLY SEQRES 17 A 495 LEU ILE PHE LYS HIS TRP CYS THR SER THR CYS GLN PHE SEQRES 18 A 495 GLY ASP PRO GLY ASP ILE MET SER PRO ARG ASP LYS GLY SEQRES 19 A 495 PHE LEU CYS PRO GLU PHE PRO GLY SER PHE ARG LYS LYS SEQRES 20 A 495 CYS ASN PHE ALA THR THR PRO ILE CYS GLU TYR ASP GLY SEQRES 21 A 495 ASN MET VAL SER GLY TYR LYS LYS VAL MET ALA THR ILE SEQRES 22 A 495 ASP SER PHE GLN SER PHE ASN THR SER THR MET HIS PHE SEQRES 23 A 495 THR ASP GLU ARG ILE GLU TRP LYS ASP PRO ASP GLY MET SEQRES 24 A 495 LEU ARG ASP HIS ILE ASN ILE LEU VAL THR LYS ASP ILE SEQRES 25 A 495 ASP PHE ASP ASN LEU GLY GLU ASN PRO CYS LYS ILE GLY SEQRES 26 A 495 LEU GLN THR SER SER ILE GLU GLY ALA TRP GLY SER GLY SEQRES 27 A 495 VAL GLY PHE THR LEU THR CYS LEU VAL SER LEU THR GLU SEQRES 28 A 495 CYS PRO THR PHE LEU THR SER ILE LYS ALA CYS ASP LYS SEQRES 29 A 495 ALA ILE CYS TYR GLY ALA GLU SER VAL THR LEU THR ARG SEQRES 30 A 495 GLY GLN ASN THR VAL LYS VAL SER GLY LYS GLY GLY HIS SEQRES 31 A 495 SER GLY SER THR PHE ARG CYS CYS HIS GLY GLU ASP CYS SEQRES 32 A 495 SER GLN ILE GLY LEU HIS ALA ALA ALA PRO HIS LEU ASP SEQRES 33 A 495 LYS VAL ASN GLY ILE SER GLU ILE GLU ASN SER LYS VAL SEQRES 34 A 495 TYR ASP ASP GLY ALA PRO GLN CYS GLY ILE LYS CYS TRP SEQRES 35 A 495 PHE VAL LYS SER GLY GLU TRP ILE SER GLY ILE PHE SER SEQRES 36 A 495 GLY ASN GLY GLY SER ASP ASP ASP ASP LYS ALA GLY TRP SEQRES 37 A 495 SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER GLY GLY SEQRES 38 A 495 GLY SER GLY GLY GLY SER TRP SER HIS PRO GLN PHE GLU SEQRES 39 A 495 LYS HET NAG B 1 14 HET NAG B 2 14 HET FUL B 3 10 HET K A 504 1 HET NA A 505 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 FUL C6 H12 O5 FORMUL 3 K K 1+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *364(H2 O) HELIX 1 AA1 VAL A 19 THR A 23 5 5 HELIX 2 AA2 SER A 264 ALA A 271 1 8 HELIX 3 AA3 THR A 272 PHE A 276 5 5 SHEET 1 A 4 LEU A 25 THR A 32 0 SHEET 2 A 4 ARG A 301 VAL A 308 -1 SHEET 3 A 4 VAL A 181 ILE A 186 -1 SHEET 4 A 4 CYS A 175 VAL A 177 -1 SHEET 1 B 4 TYR A 37 THR A 44 0 SHEET 2 B 4 SER A 52 ILE A 59 -1 SHEET 3 B 4 SER A 154 PHE A 161 -1 SHEET 4 B 4 GLU A 164 ASP A 171 -1 SHEET 1 C 7 HIS A 285 THR A 287 0 SHEET 2 C 7 ARG A 290 TRP A 293 -1 SHEET 3 C 7 THR A 63 ALA A 70 -1 SHEET 4 C 7 SER A 144 SER A 154 -1 SHEET 5 C 7 THR A 197 PHE A 200 -1 SHEET 6 C 7 GLY A 206 PHE A 211 -1 SHEET 7 C 7 GLN A 277 THR A 281 -1 SHEET 1 D 3 ARG A 78 SER A 84 0 SHEET 2 D 3 CYS A 129 ASP A 137 -1 SHEET 3 D 3 HIS A 104 GLN A 110 -1 SHEET 1 E 2 PHE A 244 LYS A 247 0 SHEET 2 E 2 ILE A 255 TYR A 258 -1 SHEET 1 F 3 GLY A 378 GLY A 386 0 SHEET 2 F 3 PHE A 341 THR A 350 -1 SHEET 3 F 3 LYS A 323 GLY A 333 -1 SHEET 1 G 3 ARG A 396 CYS A 398 0 SHEET 2 G 3 THR A 354 ASP A 363 -1 SHEET 3 G 3 ILE A 366 THR A 376 -1 SHEET 1 H 2 GLY A 72 ASP A 76 0 SHEET 2 H 2 LYS A 140 ALA A 145 -1 SSBOND 1 CYS A 103 CYS A 237 1555 1555 2.05 SSBOND 2 CYS A 132 CYS A 256 1555 1555 2.03 SSBOND 3 CYS A 158 CYS A 167 1555 1555 2.06 SSBOND 4 CYS A 175 CYS A 184 1555 1555 2.05 SSBOND 5 CYS A 215 CYS A 219 1555 1555 2.08 SSBOND 6 CYS A 322 CYS A 352 1555 1555 2.03 SSBOND 7 CYS A 345 CYS A 397 1555 1555 2.03 SSBOND 8 CYS A 362 CYS A 367 1555 1555 2.03 SSBOND 9 CYS A 398 CYS A 403 1555 1555 2.06 LINK ND2 ASN A 280 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUL B 3 1555 1555 1.44 LINK OH TYR A 105 K K A 504 1555 1555 2.90 LINK O PHE A 240 K K A 504 1555 1555 2.69 LINK O PRO A 241 K K A 504 1555 1555 3.30 LINK O GLY A 242 K K A 504 1555 1555 2.65 LINK OG SER A 243 NA NA A 505 1555 1555 2.37 LINK OG SER A 243 NA NA A 505 1555 3565 2.37 LINK O ASP A 259 K K A 504 1555 2665 2.68 LINK K K A 504 O HOH A 883 1555 1555 2.74 LINK NA NA A 505 O HOH A 729 1555 1555 2.38 LINK NA NA A 505 O HOH A 729 1555 3565 2.38 CRYST1 107.048 107.048 127.512 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009342 0.005393 0.000000 0.00000 SCALE2 0.000000 0.010787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007842 0.00000