HEADER LYASE 27-JUL-16 5LLA TITLE CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE ISOZYME XIII WITH 4-(1H- TITLE 2 BENZIMIDAZOL-1-YLACETYL)-2-CHLOROBENZENESULFONAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 13; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: HUMAN CARBONIC ANHYDRASE XIII; COMPND 5 SYNONYM: CARBONATE DEHYDRATASE XIII,CARBONIC ANHYDRASE XIII,CA-XIII; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DRUG DESIGN, CARBONIC ANHYDRASE, BENZENESULFONAMIDE, METAL-BINDING, KEYWDS 2 LYASE-LYASE INHIBITOR COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SMIRNOV,E.MANAKOVA,S.GRAZULIS REVDAT 3 10-JAN-24 5LLA 1 REMARK LINK REVDAT 2 29-NOV-17 5LLA 1 REMARK REVDAT 1 16-AUG-17 5LLA 0 JRNL AUTH E.CAPKAUSKAITE,V.LINKUVIENE,A.SMIRNOV,G.MILINAVICIUTE, JRNL AUTH 2 D.TIMM,A.KASILIAUSKAITE,E.MANAKOVA,S.GRAZULIS,D.MATULIS JRNL TITL COMBINATORIAL DESIGN OF ISOFORM-SELECTIVE N-ALKYLATED JRNL TITL 2 BENZIMIDAZOLE-BASED INHIBITORS OF CARBONIC ANHYDRASES JRNL REF CHEMISTRYSELECT 2017 JRNL REFN ESSN 2365-6549 JRNL DOI 10.1002/SLCT.201700531 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 74022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 591 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4440 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6067 ; 2.452 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 6.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;32.967 ;24.039 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;12.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.233 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3490 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5LLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826606 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 159.284 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4KNN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION BUFFER: 0.1M AMMONIUM REMARK 280 CITRATE (PH 7), 0.1M SODIUM ACETATE (PH 4.5) AND 26% PEG3350, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.01150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.64200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.63800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.64200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.01150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.63800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 LEU B 5 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 557 O HOH B 619 2.00 REMARK 500 O HOH B 453 O HOH B 656 2.07 REMARK 500 OG SER A 230 O HOH A 401 2.14 REMARK 500 O HOH B 484 O HOH B 560 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 105 CG HIS B 105 CD2 0.070 REMARK 500 HIS A 263 CG HIS A 263 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 94 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 67 -177.52 -174.56 REMARK 500 ASN B 77 48.80 -92.05 REMARK 500 PHE B 178 117.61 -163.15 REMARK 500 ASN B 246 50.88 -154.55 REMARK 500 SER A 67 -178.89 -179.23 REMARK 500 ASP A 73 130.13 -39.85 REMARK 500 ASN A 77 34.90 -99.64 REMARK 500 ASN A 246 41.24 -151.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 96 NE2 REMARK 620 2 HIS B 98 NE2 101.3 REMARK 620 3 HIS B 121 ND1 114.3 95.5 REMARK 620 4 6YQ B 302 O8 87.6 170.9 82.5 REMARK 620 5 6YQ B 302 N10 106.8 111.9 124.3 62.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 98 NE2 104.7 REMARK 620 3 HIS A 121 ND1 109.9 93.7 REMARK 620 4 6YQ A 302 S7 98.1 146.5 101.3 REMARK 620 5 6YQ A 302 N10 113.7 111.2 120.7 35.8 REMARK 620 6 6YQ A 302 O8 87.3 167.9 80.6 28.3 63.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6YQ B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6YQ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LL4 RELATED DB: PDB REMARK 900 RELATED ID: 5LL5 RELATED DB: PDB REMARK 900 RELATED ID: 5LL9 RELATED DB: PDB DBREF 5LLA B 2 263 UNP Q8N1Q1 CAH13_HUMAN 1 262 DBREF 5LLA A 2 263 UNP Q8N1Q1 CAH13_HUMAN 1 262 SEQADV 5LLA MET B 1 UNP Q8N1Q1 INITIATING METHIONINE SEQADV 5LLA MET A 1 UNP Q8N1Q1 INITIATING METHIONINE SEQRES 1 B 263 MET MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 B 263 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 B 263 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 B 263 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 B 263 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 B 263 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 B 263 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 B 263 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 B 263 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 B 263 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 B 263 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 B 263 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 B 263 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 B 263 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 B 263 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 B 263 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 B 263 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 B 263 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 B 263 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 B 263 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 B 263 SER PHE HIS SEQRES 1 A 263 MET MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 A 263 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 A 263 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 A 263 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 A 263 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 A 263 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 A 263 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 A 263 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 A 263 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 A 263 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 A 263 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 A 263 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 A 263 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 A 263 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 A 263 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 A 263 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 A 263 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 A 263 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 A 263 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 A 263 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 A 263 SER PHE HIS HET ZN B 301 1 HET 6YQ B 302 23 HET CIT B 303 13 HET EDO B 304 4 HET ZN A 301 1 HET 6YQ A 302 23 HET CIT A 303 13 HET EDO A 304 4 HETNAM ZN ZINC ION HETNAM 6YQ 4-[2-(BENZIMIDAZOL-1-YL)ETHANOYL]-2-CHLORANYL- HETNAM 2 6YQ BENZENESULFONAMIDE HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 6YQ 2(C15 H12 CL N3 O3 S) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 11 HOH *550(H2 O) HELIX 1 AA1 GLY B 14 ILE B 16 5 3 HELIX 2 AA2 HIS B 17 PHE B 22 1 6 HELIX 3 AA3 PRO B 23 GLY B 27 5 5 HELIX 4 AA4 SER B 132 ALA B 137 1 6 HELIX 5 AA5 ASN B 156 ASP B 164 1 9 HELIX 6 AA6 THR B 165 LYS B 170 5 6 HELIX 7 AA7 ASP B 182 LEU B 187 1 6 HELIX 8 AA8 SER B 221 ARG B 229 1 9 HELIX 9 AA9 GLY A 14 PHE A 21 5 8 HELIX 10 AB1 PHE A 22 GLY A 27 5 6 HELIX 11 AB2 LYS A 36 VAL A 40 5 5 HELIX 12 AB3 SER A 132 ALA A 137 1 6 HELIX 13 AB4 ASN A 156 GLN A 158 5 3 HELIX 14 AB5 LEU A 159 ASP A 164 1 6 HELIX 15 AB6 THR A 165 LYS A 170 5 6 HELIX 16 AB7 LEU A 183 LEU A 187 5 5 HELIX 17 AB8 SER A 221 ARG A 229 1 9 SHEET 1 AA1 2 GLU B 34 ILE B 35 0 SHEET 2 AA1 2 ILE B 110 VAL B 111 1 O ILE B 110 N ILE B 35 SHEET 1 AA210 LYS B 41 TYR B 42 0 SHEET 2 AA210 ARG B 259 ALA B 260 1 O ALA B 260 N LYS B 41 SHEET 3 AA210 TYR B 193 GLY B 198 -1 N THR B 195 O ARG B 259 SHEET 4 AA210 VAL B 209 LEU B 214 -1 O VAL B 209 N GLY B 198 SHEET 5 AA210 LEU B 143 ILE B 152 1 N GLY B 147 O ILE B 212 SHEET 6 AA210 ALA B 118 ASN B 126 -1 N LEU B 120 O VAL B 148 SHEET 7 AA210 TYR B 90 TRP B 99 -1 N GLN B 94 O VAL B 123 SHEET 8 AA210 PHE B 68 PHE B 72 -1 N VAL B 70 O VAL B 95 SHEET 9 AA210 ALA B 58 ASN B 63 -1 N ILE B 60 O ASP B 71 SHEET 10 AA210 GLN B 175 ARG B 177 -1 O THR B 176 N ILE B 61 SHEET 1 AA3 6 LEU B 49 LYS B 52 0 SHEET 2 AA3 6 VAL B 80 GLY B 83 -1 O ARG B 82 N SER B 50 SHEET 3 AA3 6 TYR B 90 TRP B 99 -1 O TYR B 90 N LEU B 81 SHEET 4 AA3 6 ALA B 118 ASN B 126 -1 O VAL B 123 N GLN B 94 SHEET 5 AA3 6 LEU B 143 ILE B 152 -1 O VAL B 148 N LEU B 120 SHEET 6 AA3 6 ILE B 218 ILE B 220 1 O ILE B 218 N GLN B 151 SHEET 1 AA4 2 GLU A 34 ILE A 35 0 SHEET 2 AA4 2 ILE A 110 VAL A 111 1 O ILE A 110 N ILE A 35 SHEET 1 AA510 LYS A 41 TYR A 42 0 SHEET 2 AA510 ARG A 259 ALA A 260 1 O ALA A 260 N LYS A 41 SHEET 3 AA510 TYR A 193 GLY A 198 -1 N THR A 195 O ARG A 259 SHEET 4 AA510 VAL A 209 LEU A 214 -1 O VAL A 209 N GLY A 198 SHEET 5 AA510 LEU A 143 ILE A 152 1 N GLY A 147 O LEU A 214 SHEET 6 AA510 ALA A 118 ASN A 126 -1 N LEU A 120 O VAL A 148 SHEET 7 AA510 TYR A 90 TRP A 99 -1 N ARG A 93 O VAL A 123 SHEET 8 AA510 PHE A 68 PHE A 72 -1 N VAL A 70 O VAL A 95 SHEET 9 AA510 ALA A 58 ASN A 63 -1 N LYS A 59 O ASP A 71 SHEET 10 AA510 GLN A 175 ARG A 177 -1 O THR A 176 N ILE A 61 SHEET 1 AA6 6 ARG A 47 LYS A 52 0 SHEET 2 AA6 6 VAL A 80 GLY A 84 -1 O ARG A 82 N SER A 50 SHEET 3 AA6 6 TYR A 90 TRP A 99 -1 O TYR A 90 N LEU A 81 SHEET 4 AA6 6 ALA A 118 ASN A 126 -1 O VAL A 123 N ARG A 93 SHEET 5 AA6 6 LEU A 143 ILE A 152 -1 O VAL A 148 N LEU A 120 SHEET 6 AA6 6 ILE A 218 ILE A 220 1 O ILE A 218 N GLN A 151 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.04 LINK NE2 HIS B 98 ZN ZN B 301 1555 1555 2.04 LINK ND1 HIS B 121 ZN ZN B 301 1555 1555 2.02 LINK ZN ZN B 301 O8 6YQ B 302 1555 1555 2.54 LINK ZN ZN B 301 N10 6YQ B 302 1555 1555 1.90 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 98 ZN ZN A 301 1555 1555 2.01 LINK ND1 HIS A 121 ZN ZN A 301 1555 1555 2.05 LINK ZN ZN A 301 S7 6YQ A 302 1555 1555 2.95 LINK ZN ZN A 301 N10 6YQ A 302 1555 1555 1.80 LINK ZN ZN A 301 O8 6YQ A 302 1555 1555 2.69 CISPEP 1 SER B 31 PRO B 32 0 0.39 CISPEP 2 PRO B 203 PRO B 204 0 9.25 CISPEP 3 SER A 31 PRO A 32 0 -4.31 CISPEP 4 PRO A 203 PRO A 204 0 17.47 SITE 1 AC1 5 HIS B 96 HIS B 98 HIS B 121 THR B 201 SITE 2 AC1 5 6YQ B 302 SITE 1 AC2 10 HIS B 96 HIS B 98 HIS B 121 PHE B 133 SITE 2 AC2 10 VAL B 145 LEU B 200 THR B 201 VAL B 202 SITE 3 AC2 10 TRP B 211 ZN B 301 SITE 1 AC3 9 HOH A 434 GLY B 100 SER B 101 HIS B 105 SITE 2 AC3 9 SER B 245 HIS B 247 HOH B 514 HOH B 569 SITE 3 AC3 9 HOH B 605 SITE 1 AC4 5 SER A 50 ARG A 82 PRO B 189 SER B 190 SITE 2 AC4 5 HOH B 483 SITE 1 AC5 4 HIS A 96 HIS A 98 HIS A 121 6YQ A 302 SITE 1 AC6 12 HIS A 96 HIS A 98 HIS A 121 PHE A 133 SITE 2 AC6 12 VAL A 145 LEU A 200 THR A 201 VAL A 202 SITE 3 AC6 12 TRP A 211 ZN A 301 HOH A 470 HOH A 613 SITE 1 AC7 7 GLY A 100 SER A 101 HIS A 105 SER A 245 SITE 2 AC7 7 HIS A 247 HOH A 428 HOH A 462 SITE 1 AC8 5 LYS A 215 GLN A 216 HOH A 427 HOH A 516 SITE 2 AC8 5 HOH A 598 CRYST1 56.023 57.276 159.284 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006278 0.00000