HEADER TRANSFERASE 27-JUL-16 5LLF TITLE STRUCTURE OF POLYPHOSPHATE KINASE 2 MUTANT D117N FROM FRANCISELLA TITLE 2 TULARENSIS WITH POLYPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHOSPHATE KINASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.4.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS SOURCE 3 (STRAIN SCHU S4 / SCHU 4); SOURCE 4 ORGANISM_TAXID: 177416; SOURCE 5 GENE: PPK2, FTT_1564, BZ14_1190; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS POLYPHOSPHATE KINASE, POLYPHOSPHATE METABOLISM, NUCLEOTIDE KEYWDS 2 METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.L.ROACH,A.E.PARNELL REVDAT 5 10-JAN-24 5LLF 1 REMARK REVDAT 4 16-OCT-19 5LLF 1 REMARK REVDAT 3 11-APR-18 5LLF 1 JRNL REVDAT 2 21-MAR-18 5LLF 1 JRNL REVDAT 1 11-OCT-17 5LLF 0 JRNL AUTH A.E.PARNELL,S.MORDHORST,F.KEMPER,M.GIURRANDINO,J.P.PRINCE, JRNL AUTH 2 N.J.SCHWARZER,A.HOFER,D.WOHLWEND,H.J.JESSEN,S.GERHARDT, JRNL AUTH 3 O.EINSLE,P.C.F.OYSTON,J.N.ANDEXER,P.L.ROACH JRNL TITL SUBSTRATE RECOGNITION AND MECHANISM REVEALED BY LIGAND-BOUND JRNL TITL 2 POLYPHOSPHATE KINASE 2 STRUCTURES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 3350 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29531036 JRNL DOI 10.1073/PNAS.1710741115 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.E.BATTEN,A.E.PARNELL,N.J.WELLS,A.L.MURCH,P.C.OYSTON, REMARK 1 AUTH 2 P.L.ROACH REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF POLYPHOSPHATE REMARK 1 TITL 2 KINASE 2 FROM THE INTRACELLULAR PATHOGEN FRANCISELLA REMARK 1 TITL 3 TULARENSIS. REMARK 1 REF BIOSCI. REP. V. 36 00294 2016 REMARK 1 REFN ISSN 1573-4935 REMARK 1 PMID 26582818 REMARK 1 DOI 10.1042/BSR20150203 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 68367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 69.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32.5 % MPD/PEG100/PEG3350, 0.1 M REMARK 280 BICINE/TRIZMA BASE PH 8.5, 0.09 M NPS, 0.5 MM POLYP, 2.5 MM REMARK 280 AMPPCH2P, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 127.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 127.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.97000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 127.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.97000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 269 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 LYS B 269 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 LYS C 269 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 VAL D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 5 OG REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 SER A 265 OG REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 SER B 264 OG REMARK 470 SER B 265 OG REMARK 470 SER C 5 OG REMARK 470 GLN C 6 CG CD OE1 NE2 REMARK 470 GLU C 7 CG CD OE1 OE2 REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LEU C 12 CG CD1 CD2 REMARK 470 LYS C 23 CG CD CE NZ REMARK 470 SER C 265 OG REMARK 470 LEU D 4 CG CD1 CD2 REMARK 470 GLU D 7 CG CD OE1 OE2 REMARK 470 LYS D 11 CG CD CE NZ REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 LYS D 269 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 178 O HOH D 401 1.83 REMARK 500 OH TYR B 138 O HOH B 401 1.88 REMARK 500 O76 6YX A 303 O HOH A 401 1.88 REMARK 500 O HOH D 444 O HOH D 448 1.96 REMARK 500 O LEU B 183 O HOH B 402 1.97 REMARK 500 N LYS A 21 O HOH A 402 1.99 REMARK 500 OH TYR D 138 O HOH D 402 2.06 REMARK 500 O HOH D 456 O HOH D 463 2.07 REMARK 500 NH2 ARG B 26 O80 6YX A 303 2.12 REMARK 500 O HOH D 436 O HOH D 453 2.15 REMARK 500 O36 6YY C 301 O HOH C 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 73 -65.43 69.10 REMARK 500 ARG A 80 -74.30 -52.75 REMARK 500 ARG A 118 -169.72 -124.23 REMARK 500 ALA A 218 74.24 -154.04 REMARK 500 LYS A 266 -55.87 69.38 REMARK 500 ARG B 118 -165.36 -127.91 REMARK 500 SER B 119 -166.48 -160.91 REMARK 500 SER C 91 170.11 -58.60 REMARK 500 ALA C 218 73.96 -156.00 REMARK 500 ARG D 80 93.57 -68.61 REMARK 500 LYS D 89 129.94 67.59 REMARK 500 ARG D 118 -166.96 -122.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6YX A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6YY C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6YW D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YEG RELATED DB: PDB REMARK 900 APO-STRUCTURE DBREF 5LLF A 1 269 UNP Q5NEQ5 Q5NEQ5_FRATT 1 269 DBREF 5LLF B 1 269 UNP Q5NEQ5 Q5NEQ5_FRATT 1 269 DBREF 5LLF C 1 269 UNP Q5NEQ5 Q5NEQ5_FRATT 1 269 DBREF 5LLF D 1 269 UNP Q5NEQ5 Q5NEQ5_FRATT 1 269 SEQADV 5LLF ASN A 117 UNP Q5NEQ5 ASP 117 ENGINEERED MUTATION SEQADV 5LLF ASN B 117 UNP Q5NEQ5 ASP 117 ENGINEERED MUTATION SEQADV 5LLF ASN C 117 UNP Q5NEQ5 ASP 117 ENGINEERED MUTATION SEQADV 5LLF ASN D 117 UNP Q5NEQ5 ASP 117 ENGINEERED MUTATION SEQRES 1 A 269 MET LYS VAL LEU SER GLN GLU GLU ARG GLN LYS LEU PHE SEQRES 2 A 269 LEU GLU ASN ILE PHE PRO TYR LYS HIS LYS ILE PRO ARG SEQRES 3 A 269 ASN VAL TYR GLU LYS GLN LYS HIS TYR LEU GLN ILE GLU SEQRES 4 A 269 LEU LEU LYS PHE GLN LYS TRP VAL LYS GLU ASN ASN LYS SEQRES 5 A 269 LYS VAL LEU ILE ILE PHE GLU GLY ARG ASP ALA ALA GLY SEQRES 6 A 269 LYS GLY GLY THR ILE LYS ARG MET MET GLU HIS LEU ASN SEQRES 7 A 269 PRO ARG GLY ALA LYS VAL ILE ALA LEU GLU LYS PRO SER SEQRES 8 A 269 GLU GLN GLU ARG ASN GLN TRP TYR PHE GLN ARG TYR ILE SEQRES 9 A 269 GLU HIS LEU PRO SER GLY GLY GLU ILE VAL LEU PHE ASN SEQRES 10 A 269 ARG SER TRP TYR ASN ARG ALA GLY VAL GLU ARG VAL MET SEQRES 11 A 269 GLY PHE CYS THR GLU ARG GLU TYR PHE LEU PHE LEU GLU SEQRES 12 A 269 GLN ALA PRO GLN LEU GLU LYS MET LEU VAL ASP SER GLY SEQRES 13 A 269 THR MET ILE ILE LYS PHE TRP PHE SER VAL SER GLN GLN SEQRES 14 A 269 GLU GLN LYS ASN ARG PHE ALA ALA ARG GLU SER HIS PRO SEQRES 15 A 269 LEU LYS GLN TRP LYS LEU SER PRO ILE ASP LYS ALA SER SEQRES 16 A 269 LEU ASP LYS TRP ASP ASP TYR THR GLU ALA LYS GLU ARG SEQRES 17 A 269 MET PHE ILE TYR THR ASP LYS PRO TYR ALA PRO TRP VAL SEQRES 18 A 269 ILE VAL LYS SER ASP ASP LYS LYS ARG ALA ARG LEU ASN SEQRES 19 A 269 ALA ILE ARG TYR ILE LEU ASN ASN VAL ASP TYR ASP ASN SEQRES 20 A 269 LYS ASP HIS GLU VAL ALA ILE PRO PRO ASP PRO LEU ILE SEQRES 21 A 269 VAL GLY THR SER SER LYS ILE TYR LYS SEQRES 1 B 269 MET LYS VAL LEU SER GLN GLU GLU ARG GLN LYS LEU PHE SEQRES 2 B 269 LEU GLU ASN ILE PHE PRO TYR LYS HIS LYS ILE PRO ARG SEQRES 3 B 269 ASN VAL TYR GLU LYS GLN LYS HIS TYR LEU GLN ILE GLU SEQRES 4 B 269 LEU LEU LYS PHE GLN LYS TRP VAL LYS GLU ASN ASN LYS SEQRES 5 B 269 LYS VAL LEU ILE ILE PHE GLU GLY ARG ASP ALA ALA GLY SEQRES 6 B 269 LYS GLY GLY THR ILE LYS ARG MET MET GLU HIS LEU ASN SEQRES 7 B 269 PRO ARG GLY ALA LYS VAL ILE ALA LEU GLU LYS PRO SER SEQRES 8 B 269 GLU GLN GLU ARG ASN GLN TRP TYR PHE GLN ARG TYR ILE SEQRES 9 B 269 GLU HIS LEU PRO SER GLY GLY GLU ILE VAL LEU PHE ASN SEQRES 10 B 269 ARG SER TRP TYR ASN ARG ALA GLY VAL GLU ARG VAL MET SEQRES 11 B 269 GLY PHE CYS THR GLU ARG GLU TYR PHE LEU PHE LEU GLU SEQRES 12 B 269 GLN ALA PRO GLN LEU GLU LYS MET LEU VAL ASP SER GLY SEQRES 13 B 269 THR MET ILE ILE LYS PHE TRP PHE SER VAL SER GLN GLN SEQRES 14 B 269 GLU GLN LYS ASN ARG PHE ALA ALA ARG GLU SER HIS PRO SEQRES 15 B 269 LEU LYS GLN TRP LYS LEU SER PRO ILE ASP LYS ALA SER SEQRES 16 B 269 LEU ASP LYS TRP ASP ASP TYR THR GLU ALA LYS GLU ARG SEQRES 17 B 269 MET PHE ILE TYR THR ASP LYS PRO TYR ALA PRO TRP VAL SEQRES 18 B 269 ILE VAL LYS SER ASP ASP LYS LYS ARG ALA ARG LEU ASN SEQRES 19 B 269 ALA ILE ARG TYR ILE LEU ASN ASN VAL ASP TYR ASP ASN SEQRES 20 B 269 LYS ASP HIS GLU VAL ALA ILE PRO PRO ASP PRO LEU ILE SEQRES 21 B 269 VAL GLY THR SER SER LYS ILE TYR LYS SEQRES 1 C 269 MET LYS VAL LEU SER GLN GLU GLU ARG GLN LYS LEU PHE SEQRES 2 C 269 LEU GLU ASN ILE PHE PRO TYR LYS HIS LYS ILE PRO ARG SEQRES 3 C 269 ASN VAL TYR GLU LYS GLN LYS HIS TYR LEU GLN ILE GLU SEQRES 4 C 269 LEU LEU LYS PHE GLN LYS TRP VAL LYS GLU ASN ASN LYS SEQRES 5 C 269 LYS VAL LEU ILE ILE PHE GLU GLY ARG ASP ALA ALA GLY SEQRES 6 C 269 LYS GLY GLY THR ILE LYS ARG MET MET GLU HIS LEU ASN SEQRES 7 C 269 PRO ARG GLY ALA LYS VAL ILE ALA LEU GLU LYS PRO SER SEQRES 8 C 269 GLU GLN GLU ARG ASN GLN TRP TYR PHE GLN ARG TYR ILE SEQRES 9 C 269 GLU HIS LEU PRO SER GLY GLY GLU ILE VAL LEU PHE ASN SEQRES 10 C 269 ARG SER TRP TYR ASN ARG ALA GLY VAL GLU ARG VAL MET SEQRES 11 C 269 GLY PHE CYS THR GLU ARG GLU TYR PHE LEU PHE LEU GLU SEQRES 12 C 269 GLN ALA PRO GLN LEU GLU LYS MET LEU VAL ASP SER GLY SEQRES 13 C 269 THR MET ILE ILE LYS PHE TRP PHE SER VAL SER GLN GLN SEQRES 14 C 269 GLU GLN LYS ASN ARG PHE ALA ALA ARG GLU SER HIS PRO SEQRES 15 C 269 LEU LYS GLN TRP LYS LEU SER PRO ILE ASP LYS ALA SER SEQRES 16 C 269 LEU ASP LYS TRP ASP ASP TYR THR GLU ALA LYS GLU ARG SEQRES 17 C 269 MET PHE ILE TYR THR ASP LYS PRO TYR ALA PRO TRP VAL SEQRES 18 C 269 ILE VAL LYS SER ASP ASP LYS LYS ARG ALA ARG LEU ASN SEQRES 19 C 269 ALA ILE ARG TYR ILE LEU ASN ASN VAL ASP TYR ASP ASN SEQRES 20 C 269 LYS ASP HIS GLU VAL ALA ILE PRO PRO ASP PRO LEU ILE SEQRES 21 C 269 VAL GLY THR SER SER LYS ILE TYR LYS SEQRES 1 D 269 MET LYS VAL LEU SER GLN GLU GLU ARG GLN LYS LEU PHE SEQRES 2 D 269 LEU GLU ASN ILE PHE PRO TYR LYS HIS LYS ILE PRO ARG SEQRES 3 D 269 ASN VAL TYR GLU LYS GLN LYS HIS TYR LEU GLN ILE GLU SEQRES 4 D 269 LEU LEU LYS PHE GLN LYS TRP VAL LYS GLU ASN ASN LYS SEQRES 5 D 269 LYS VAL LEU ILE ILE PHE GLU GLY ARG ASP ALA ALA GLY SEQRES 6 D 269 LYS GLY GLY THR ILE LYS ARG MET MET GLU HIS LEU ASN SEQRES 7 D 269 PRO ARG GLY ALA LYS VAL ILE ALA LEU GLU LYS PRO SER SEQRES 8 D 269 GLU GLN GLU ARG ASN GLN TRP TYR PHE GLN ARG TYR ILE SEQRES 9 D 269 GLU HIS LEU PRO SER GLY GLY GLU ILE VAL LEU PHE ASN SEQRES 10 D 269 ARG SER TRP TYR ASN ARG ALA GLY VAL GLU ARG VAL MET SEQRES 11 D 269 GLY PHE CYS THR GLU ARG GLU TYR PHE LEU PHE LEU GLU SEQRES 12 D 269 GLN ALA PRO GLN LEU GLU LYS MET LEU VAL ASP SER GLY SEQRES 13 D 269 THR MET ILE ILE LYS PHE TRP PHE SER VAL SER GLN GLN SEQRES 14 D 269 GLU GLN LYS ASN ARG PHE ALA ALA ARG GLU SER HIS PRO SEQRES 15 D 269 LEU LYS GLN TRP LYS LEU SER PRO ILE ASP LYS ALA SER SEQRES 16 D 269 LEU ASP LYS TRP ASP ASP TYR THR GLU ALA LYS GLU ARG SEQRES 17 D 269 MET PHE ILE TYR THR ASP LYS PRO TYR ALA PRO TRP VAL SEQRES 18 D 269 ILE VAL LYS SER ASP ASP LYS LYS ARG ALA ARG LEU ASN SEQRES 19 D 269 ALA ILE ARG TYR ILE LEU ASN ASN VAL ASP TYR ASP ASN SEQRES 20 D 269 LYS ASP HIS GLU VAL ALA ILE PRO PRO ASP PRO LEU ILE SEQRES 21 D 269 VAL GLY THR SER SER LYS ILE TYR LYS HET PO4 A 301 5 HET PO4 A 302 5 HET 6YX A 303 97 HET PO4 B 301 5 HET PO4 B 302 5 HET 6YY C 301 45 HET CL C 302 1 HET PO4 C 303 5 HET PO4 C 304 5 HET 6YW D 301 25 HET PO4 D 302 5 HET PO4 D 303 5 HETNAM PO4 PHOSPHATE ION HETNAM 6YX [OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL- HETNAM 2 6YX [OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL- HETNAM 3 6YX [OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL- HETNAM 4 6YX [OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL-[OXIDANYL- HETNAM 5 6YX [OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 6 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 7 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 8 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 9 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 10 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 11 6YX PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 12 6YX PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE HETNAM 6YY BIS[OXIDANYL-[OXIDANYL-[OXIDANYL- HETNAM 2 6YY [OXIDANYL(PHOSPHONOOXY)PHOSPHORYL]OXY-PHOSPHORYL]OXY- HETNAM 3 6YY PHOSPHORYL]OXY-PHOSPHORYL] HYDROGEN PHOSPHATE HETNAM CL CHLORIDE ION HETNAM 6YW [OXIDANYL-[OXIDANYL-[OXIDANYL(PHOSPHONOOXY) HETNAM 2 6YW PHOSPHORYL]OXY-PHOSPHORYL]OXY-PHOSPHORYL] PHOSPHONO HETNAM 3 6YW HYDROGEN PHOSPHATE FORMUL 5 PO4 8(O4 P 3-) FORMUL 7 6YX H26 O73 P24 FORMUL 10 6YY H13 O34 P11 FORMUL 11 CL CL 1- FORMUL 14 6YW H8 O19 P6 FORMUL 17 HOH *245(H2 O) HELIX 1 AA1 GLN A 6 GLU A 15 1 10 HELIX 2 AA2 PRO A 25 ASN A 50 1 26 HELIX 3 AA3 GLY A 65 GLU A 75 1 11 HELIX 4 AA4 SER A 91 ASN A 96 1 6 HELIX 5 AA5 PHE A 100 GLU A 105 1 6 HELIX 6 AA6 SER A 119 ALA A 124 5 6 HELIX 7 AA7 GLY A 125 MET A 130 1 6 HELIX 8 AA8 THR A 134 SER A 155 1 22 HELIX 9 AA9 SER A 167 HIS A 181 1 15 HELIX 10 AB1 LYS A 184 LEU A 188 5 5 HELIX 11 AB2 ILE A 191 LEU A 196 1 6 HELIX 12 AB3 LYS A 198 ASP A 214 1 17 HELIX 13 AB4 ASP A 227 ASN A 242 1 16 HELIX 14 AB5 SER A 264 TYR A 268 1 5 HELIX 15 AB6 GLN B 6 GLU B 15 1 10 HELIX 16 AB7 PRO B 25 ASN B 50 1 26 HELIX 17 AB8 GLY B 65 GLU B 75 1 11 HELIX 18 AB9 GLN B 93 GLN B 97 5 5 HELIX 19 AC1 PHE B 100 GLU B 105 1 6 HELIX 20 AC2 SER B 119 ALA B 124 5 6 HELIX 21 AC3 GLY B 125 MET B 130 1 6 HELIX 22 AC4 THR B 134 SER B 155 1 22 HELIX 23 AC5 SER B 167 HIS B 181 1 15 HELIX 24 AC6 PRO B 182 LEU B 188 5 7 HELIX 25 AC7 ILE B 191 LYS B 198 1 8 HELIX 26 AC8 LYS B 198 ASP B 214 1 17 HELIX 27 AC9 ASP B 227 ASN B 242 1 16 HELIX 28 AD1 SER B 264 TYR B 268 1 5 HELIX 29 AD2 GLN C 6 GLU C 15 1 10 HELIX 30 AD3 PRO C 25 ASN C 50 1 26 HELIX 31 AD4 GLY C 65 GLU C 75 1 11 HELIX 32 AD5 SER C 91 ASN C 96 1 6 HELIX 33 AD6 PHE C 100 GLU C 105 1 6 HELIX 34 AD7 SER C 119 ARG C 123 5 5 HELIX 35 AD8 GLY C 125 MET C 130 1 6 HELIX 36 AD9 THR C 134 SER C 155 1 22 HELIX 37 AE1 SER C 167 HIS C 181 1 15 HELIX 38 AE2 LYS C 184 LEU C 188 5 5 HELIX 39 AE3 SER C 189 PRO C 190 5 2 HELIX 40 AE4 ILE C 191 LYS C 198 1 8 HELIX 41 AE5 LYS C 198 ASP C 214 1 17 HELIX 42 AE6 ASP C 227 ASN C 242 1 16 HELIX 43 AE7 SER C 264 TYR C 268 1 5 HELIX 44 AE8 SER D 5 GLU D 15 1 11 HELIX 45 AE9 PRO D 25 ASN D 50 1 26 HELIX 46 AF1 GLY D 65 GLU D 75 1 11 HELIX 47 AF2 SER D 91 ASN D 96 1 6 HELIX 48 AF3 PHE D 100 GLU D 105 1 6 HELIX 49 AF4 SER D 119 ARG D 123 5 5 HELIX 50 AF5 GLY D 125 MET D 130 1 6 HELIX 51 AF6 THR D 134 SER D 155 1 22 HELIX 52 AF7 SER D 167 HIS D 181 1 15 HELIX 53 AF8 LYS D 184 LEU D 188 5 5 HELIX 54 AF9 LYS D 193 LYS D 198 1 6 HELIX 55 AG1 LYS D 198 ASP D 214 1 17 HELIX 56 AG2 ASP D 227 ASN D 242 1 16 HELIX 57 AG3 SER D 264 TYR D 268 1 5 SHEET 1 AA1 6 ALA A 82 ILE A 85 0 SHEET 2 AA1 6 GLU A 112 PHE A 116 1 O LEU A 115 N ILE A 85 SHEET 3 AA1 6 LYS A 53 GLY A 60 1 N ILE A 56 O PHE A 116 SHEET 4 AA1 6 THR A 157 SER A 165 1 O ILE A 160 N ILE A 57 SHEET 5 AA1 6 TRP A 220 LYS A 224 1 O VAL A 223 N SER A 165 SHEET 6 AA1 6 VAL A 261 THR A 263 -1 O GLY A 262 N ILE A 222 SHEET 1 AA2 6 ALA B 82 ILE B 85 0 SHEET 2 AA2 6 GLU B 112 PHE B 116 1 O LEU B 115 N ILE B 85 SHEET 3 AA2 6 LYS B 53 GLY B 60 1 N ILE B 56 O PHE B 116 SHEET 4 AA2 6 THR B 157 SER B 165 1 O ILE B 160 N ILE B 57 SHEET 5 AA2 6 TRP B 220 LYS B 224 1 O VAL B 223 N SER B 165 SHEET 6 AA2 6 VAL B 261 THR B 263 -1 O GLY B 262 N ILE B 222 SHEET 1 AA3 6 ALA C 82 ILE C 85 0 SHEET 2 AA3 6 GLU C 112 PHE C 116 1 O LEU C 115 N ILE C 85 SHEET 3 AA3 6 LYS C 53 GLY C 60 1 N ILE C 56 O PHE C 116 SHEET 4 AA3 6 THR C 157 SER C 165 1 O MET C 158 N LYS C 53 SHEET 5 AA3 6 TRP C 220 LYS C 224 1 O VAL C 223 N SER C 165 SHEET 6 AA3 6 VAL C 261 THR C 263 -1 O GLY C 262 N ILE C 222 SHEET 1 AA4 6 ALA D 82 ILE D 85 0 SHEET 2 AA4 6 GLU D 112 PHE D 116 1 O LEU D 115 N ILE D 85 SHEET 3 AA4 6 LYS D 53 GLY D 60 1 N ILE D 56 O VAL D 114 SHEET 4 AA4 6 THR D 157 SER D 165 1 O PHE D 162 N ILE D 57 SHEET 5 AA4 6 TRP D 220 LYS D 224 1 O VAL D 223 N SER D 165 SHEET 6 AA4 6 VAL D 261 THR D 263 -1 O GLY D 262 N ILE D 222 SITE 1 AC1 8 ASN A 16 ARG A 61 TRP A 163 SER A 165 SITE 2 AC1 8 VAL A 166 LYS A 206 HOH A 408 HOH A 411 SITE 1 AC2 4 ARG A 26 TYR A 29 LYS A 33 ARG A 72 SITE 1 AC3 45 LYS A 23 PRO A 25 ARG A 26 ASN A 27 SITE 2 AC3 45 ALA A 63 ALA A 64 GLY A 65 LYS A 66 SITE 3 AC3 45 GLY A 67 GLY A 68 ARG A 72 ARG A 178 SITE 4 AC3 45 LYS A 184 LYS A 187 LYS A 228 LYS A 229 SITE 5 AC3 45 ARG A 232 HOH A 401 HOH A 403 HOH A 405 SITE 6 AC3 45 HOH A 412 HOH A 421 HOH A 423 HOH A 428 SITE 7 AC3 45 HOH A 429 HOH A 438 HOH A 444 LYS B 23 SITE 8 AC3 45 PRO B 25 ARG B 26 ASN B 27 ALA B 63 SITE 9 AC3 45 ALA B 64 GLY B 65 LYS B 66 GLY B 67 SITE 10 AC3 45 GLY B 68 ARG B 72 ARG B 178 LYS B 184 SITE 11 AC3 45 LYS B 187 LYS B 228 LYS B 229 ARG B 232 SITE 12 AC3 45 HOH B 432 SITE 1 AC4 9 ASN B 16 ARG B 61 TRP B 163 SER B 165 SITE 2 AC4 9 VAL B 166 LYS B 206 HOH B 414 HOH B 423 SITE 3 AC4 9 HOH B 426 SITE 1 AC5 4 ARG B 26 TYR B 29 LYS B 33 ARG B 72 SITE 1 AC6 19 ARG C 26 ARG C 61 ALA C 63 ALA C 64 SITE 2 AC6 19 GLY C 65 LYS C 66 GLY C 67 GLY C 68 SITE 3 AC6 19 ARG C 72 ARG C 178 LYS C 184 LYS C 187 SITE 4 AC6 19 LYS C 228 LYS C 229 ARG C 232 HOH C 401 SITE 5 AC6 19 HOH C 420 HOH C 421 HOH C 448 SITE 1 AC7 9 ASN C 16 ARG C 61 TRP C 163 SER C 165 SITE 2 AC7 9 VAL C 166 LYS C 206 HOH C 404 HOH C 419 SITE 3 AC7 9 HOH C 426 SITE 1 AC8 6 ARG C 26 TYR C 29 GLU C 30 LYS C 33 SITE 2 AC8 6 ARG C 72 HOH C 453 SITE 1 AC9 15 ALA D 63 ALA D 64 GLY D 65 LYS D 66 SITE 2 AC9 15 GLY D 67 GLY D 68 ARG D 72 ARG D 178 SITE 3 AC9 15 LYS D 184 LYS D 187 LYS D 228 ARG D 232 SITE 4 AC9 15 HOH D 403 HOH D 405 HOH D 427 SITE 1 AD1 9 ASN D 16 ARG D 61 TRP D 163 SER D 165 SITE 2 AD1 9 VAL D 166 LYS D 206 HOH D 413 HOH D 415 SITE 3 AD1 9 HOH D 437 SITE 1 AD2 4 TYR D 29 LYS D 33 ARG D 72 ARG D 232 CRYST1 73.440 165.940 255.300 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003917 0.00000