HEADER OXIDOREDUCTASE 29-JUL-16 5LM8 TITLE CRYSTAL STRUCTURE OF A LACCASE-LIKE MULTICOPPER OXIDASE MCOG FROM FROM TITLE 2 ASPERGILLUS NIGER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 'MULTICOPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 GENE: AN08G08450; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS NIGER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5061; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: N593; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PALIV KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,F.BRIGANTI,J.A.TAMAYO-RAMOS,W.J.H.VAN BERKEL,A.H.WESTPHAL REVDAT 5 10-JAN-24 5LM8 1 HETSYN LINK REVDAT 4 29-JUL-20 5LM8 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 19-JUL-17 5LM8 1 REVDAT 2 17-MAY-17 5LM8 1 JRNL REVDAT 1 03-MAY-17 5LM8 0 JRNL AUTH M.FERRARONI,A.H.WESTPHAL,M.BORSARI,J.A.TAMAYO-RAMOS, JRNL AUTH 2 F.BRIGANTI,L.H.DE GRAAFF,W.J.H.VAN BERKEL JRNL TITL STRUCTURE AND FUNCTION OF ASPERGILLUS NIGER LACCASE MCOG JRNL REF BIOCATALYSIS 2017 JRNL REFN ESSN 2353-1746 JRNL DOI 10.1515/BOCA-2017-0001 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 62765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 599 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.94000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4733 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6501 ; 2.083 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 7.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;36.506 ;24.855 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 638 ;13.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3710 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 2.480 ; 2.570 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2757 ; 3.203 ; 3.841 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2527 ; 3.611 ; 2.923 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8010 ; 7.018 ;24.435 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200000982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65942 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 29.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.23 REMARK 200 STARTING MODEL: 1GW0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M NACL, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.35450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.67300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.35450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.67300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 MET A 374 CG SD CE REMARK 470 ASP A 554 CB CG OD1 OD2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 NAG E 1 O4 NAG A 614 1.04 REMARK 500 NE2 HIS A 451 CU CU A 603 1.67 REMARK 500 OD1 ASN A 134 C1 NAG A 617 1.68 REMARK 500 O4 NAG E 1 O5 BMA E 2 2.03 REMARK 500 O4 NAG C 2 O5 BMA C 3 2.07 REMARK 500 O5 NAG E 1 O4 NAG A 614 2.07 REMARK 500 O4 NAG B 1 O5 NAG B 2 2.09 REMARK 500 O HOH A 1025 O HOH A 1178 2.12 REMARK 500 O4 NAG B 2 O HOH A 701 2.12 REMARK 500 O4 NAG C 1 O5 NAG C 2 2.15 REMARK 500 OH TYR A 137 O HOH A 702 2.16 REMARK 500 O PRO A 277 O HOH A 703 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 337 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 486 CB - CG - CD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -167.70 -163.07 REMARK 500 ASN A 49 -5.30 70.21 REMARK 500 ASN A 117 30.31 -145.65 REMARK 500 ALA A 125 -14.26 81.80 REMARK 500 SER A 149 -143.68 -155.45 REMARK 500 SER A 156 -129.88 54.93 REMARK 500 THR A 212 -157.38 -159.36 REMARK 500 ASN A 216 44.15 38.32 REMARK 500 HIS A 253 47.96 -154.89 REMARK 500 ASN A 262 -2.47 65.38 REMARK 500 ASP A 271 -136.24 58.25 REMARK 500 ILE A 349 -64.01 -102.08 REMARK 500 ASN A 433 -1.86 67.47 REMARK 500 ASN A 478 58.40 37.39 REMARK 500 ARG A 482 -176.25 -173.54 REMARK 500 ALA A 570 50.41 -143.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1299 DISTANCE = 6.68 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG E 1 REMARK 610 NAG A 617 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 108 NE2 REMARK 620 2 PER A 618 O2 93.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 ND1 REMARK 620 2 HIS A 152 NE2 134.7 REMARK 620 3 HIS A 517 NE2 110.4 109.1 REMARK 620 4 PER A 618 O2 101.2 92.4 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 154 NE2 REMARK 620 2 HIS A 453 NE2 116.0 REMARK 620 3 HIS A 515 NE2 113.4 119.6 REMARK 620 4 PER A 618 O1 87.6 127.2 86.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 448 ND1 REMARK 620 2 CYS A 516 SG 127.2 REMARK 620 3 HIS A 521 ND1 102.6 129.4 REMARK 620 N 1 2 DBREF 5LM8 A 29 577 UNP A2QS62 A2QS62_ASPNC 46 594 SEQRES 1 A 549 ASN THR PRO TRP GLN GLY TYR ASP ILE ASN THR ASN TYR SEQRES 2 A 549 TYR GLU THR ILE PRO GLN THR ASN VAL VAL ARG GLU TYR SEQRES 3 A 549 TRP PHE ASP ILE VAL ASN THR THR ALA ALA LEU ASP GLY SEQRES 4 A 549 VAL GLU ARG PRO VAL LEU LEU VAL ASN GLY GLN PHE PRO SEQRES 5 A 549 GLY PRO THR ILE GLU ALA ASN TRP GLY ASP THR VAL LYS SEQRES 6 A 549 VAL HIS VAL THR ASN ARG MET GLU ASN ASN GLY THR ALA SEQRES 7 A 549 ILE HIS PHE HIS GLY ILE ARG GLN LEU TYR ASN ASN GLN SEQRES 8 A 549 MET ASP GLY VAL ALA ALA LEU THR GLN CYS PRO VAL PRO SEQRES 9 A 549 PRO ASN SER SER TYR THR TYR VAL TRP ARG ALA GLU GLU SEQRES 10 A 549 TYR GLY SER SER TRP TYR HIS SER HIS PHE SER LEU GLN SEQRES 11 A 549 ALA TRP GLU GLY VAL PHE GLY GLY ILE LEU ILE HIS GLY SEQRES 12 A 549 PRO SER THR ALA GLU TYR ASP HIS ASP LEU GLY MET VAL SEQRES 13 A 549 PHE LEU ASN ASP TRP SER HIS GLN THR VAL ASP GLU MET SEQRES 14 A 549 TYR GLN SER VAL LEU GLU SER GLN ASN PRO PRO HIS PHE SEQRES 15 A 549 GLN THR GLY LEU ILE ASN GLY SER ASN ILE TRP VAL THR SEQRES 16 A 549 ALA ASP ASN GLN THR VAL GLY ARG ARG PHE GLN THR GLU SEQRES 17 A 549 PHE VAL PRO GLY GLN ARG TYR ARG LEU ARG LEU VAL ASN SEQRES 18 A 549 ALA ALA MET HIS THR HIS PHE ARG PHE SER ILE ASP ASN SEQRES 19 A 549 HIS ASP LEU THR VAL ILE ALA SER ASP PHE VAL PRO ILE SEQRES 20 A 549 VAL PRO PHE THR THR ASN ASN VAL PRO ILE GLY MET GLY SEQRES 21 A 549 GLN ARG TYR ASP ILE ILE VAL THR ALA ASN GLN ALA PRO SEQRES 22 A 549 ASP ASN TYR TRP ILE ARG ALA ILE PRO GLN SER PHE CYS SEQRES 23 A 549 SER ASP ASN ALA ASN SER ASP ASN ILE LYS GLY VAL LEU SEQRES 24 A 549 HIS TYR GLU GLY ALA ALA ASP ASN SER ASP PRO THR SER SEQRES 25 A 549 THR LYS TRP ASP TYR GLY ASP ASP ILE GLN CYS LEU ASP SEQRES 26 A 549 PHE SER LEU ASP GLU LEU VAL PRO TRP LEU ALA LEU ASP SEQRES 27 A 549 ALA ASP ILE GLY GLY ALA GLN MET ALA GLU SER ASP VAL SEQRES 28 A 549 ASP PHE THR PRO PHE GLY ASP VAL PRO LEU TYR LEU TRP SEQRES 29 A 549 THR MET GLY GLY ASN ALA LEU ASN ILE SER TRP LYS ASP SEQRES 30 A 549 PRO THR LEU GLN GLN THR PHE GLU ASP PRO ASP LYS MET SEQRES 31 A 549 ASP TRP LYS ALA SER GLN GLY VAL ILE GLU ALA ALA ILE SEQRES 32 A 549 PRO ASN LYS TRP THR VAL LEU VAL VAL GLN THR ASP LEU SEQRES 33 A 549 PRO VAL PRO HIS PRO ILE HIS LEU HIS GLY HIS ASP PHE SEQRES 34 A 549 TYR LEU LEU ALA GLN GLY PHE GLY GLN PHE ASN PRO GLN SEQRES 35 A 549 ASN VAL THR LEU LYS THR HIS ASN PRO PRO ARG ARG ASP SEQRES 36 A 549 THR ALA LEU MET THR ALA ALA THR PRO GLU ASN GLY GLY SEQRES 37 A 549 GLY GLY TYR MET VAL ILE GLY PHE PRO ALA ASP ASN PRO SEQRES 38 A 549 GLY VAL TRP LEU ILE HIS CYS HIS ILE GLY PHE HIS ALA SEQRES 39 A 549 THR GLU GLY PHE ALA GLN GLN ILE VAL GLU ARG GLN SER SEQRES 40 A 549 GLU PHE ASN THR PHE PHE SER GLU ASP LEU LEU GLU ASN SEQRES 41 A 549 THR CYS ASP ALA TRP ASP GLU TYR ALA LYS VAL ASN PRO SEQRES 42 A 549 TYR GLY HIS GLN TYR ARG ALA LEU ALA GLY PRO TYR GLU SEQRES 43 A 549 SER GLY ILE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET BMA E 2 11 HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HET NAG A 614 14 HET NAG A 617 14 HET PER A 618 2 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM PER PEROXIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 6 CU 4(CU 2+) FORMUL 12 PER O2 2- FORMUL 13 HOH *599(H2 O) HELIX 1 AA1 ASN A 117 ASP A 121 5 5 HELIX 2 AA2 LEU A 157 GLY A 162 5 6 HELIX 3 AA3 THR A 193 GLU A 203 1 11 HELIX 4 AA4 PRO A 406 ASP A 414 1 9 HELIX 5 AA5 LYS A 421 GLN A 424 5 4 HELIX 6 AA6 THR A 491 GLY A 495 5 5 HELIX 7 AA7 ILE A 518 GLU A 524 1 7 HELIX 8 AA8 GLN A 534 PHE A 540 5 7 HELIX 9 AA9 SER A 542 ASN A 560 1 19 HELIX 10 AB1 PRO A 561 HIS A 564 5 4 SHEET 1 AA1 4 ARG A 70 VAL A 75 0 SHEET 2 AA1 4 VAL A 51 ALA A 63 -1 N VAL A 59 O LEU A 74 SHEET 3 AA1 4 THR A 91 ARG A 99 1 O HIS A 95 N PHE A 56 SHEET 4 AA1 4 SER A 136 ARG A 142 -1 O TYR A 137 N VAL A 96 SHEET 1 AA2 4 GLY A 81 ASN A 87 0 SHEET 2 AA2 4 PHE A 164 HIS A 170 1 O HIS A 170 N ALA A 86 SHEET 3 AA2 4 GLY A 147 SER A 153 -1 N SER A 149 O ILE A 167 SHEET 4 AA2 4 ILE A 107 HIS A 110 -1 N HIS A 108 O HIS A 152 SHEET 1 AA3 6 THR A 212 ILE A 215 0 SHEET 2 AA3 6 HIS A 179 TRP A 189 -1 N TRP A 189 O THR A 212 SHEET 3 AA3 6 ARG A 242 ASN A 249 1 O ARG A 244 N HIS A 179 SHEET 4 AA3 6 ARG A 290 THR A 296 -1 O VAL A 295 N TYR A 243 SHEET 5 AA3 6 LEU A 265 SER A 270 -1 N ILE A 268 O ASP A 292 SHEET 6 AA3 6 VAL A 273 THR A 280 -1 O THR A 280 N LEU A 265 SHEET 1 AA4 2 ASN A 219 VAL A 222 0 SHEET 2 AA4 2 THR A 228 ARG A 231 -1 O VAL A 229 N TRP A 221 SHEET 1 AA5 5 GLN A 234 PHE A 237 0 SHEET 2 AA5 5 LYS A 324 TYR A 329 1 O HIS A 328 N THR A 235 SHEET 3 AA5 5 ASN A 303 PRO A 310 -1 N TYR A 304 O LEU A 327 SHEET 4 AA5 5 PHE A 256 ILE A 260 -1 N SER A 259 O ARG A 307 SHEET 5 AA5 5 VAL A 283 ILE A 285 -1 O VAL A 283 N PHE A 258 SHEET 1 AA6 6 LEU A 389 MET A 394 0 SHEET 2 AA6 6 GLN A 373 PHE A 384 -1 N THR A 382 O LEU A 391 SHEET 3 AA6 6 TRP A 435 THR A 442 1 O VAL A 437 N GLN A 373 SHEET 4 AA6 6 GLY A 498 PRO A 505 -1 O MET A 500 N VAL A 440 SHEET 5 AA6 6 PHE A 457 PHE A 464 -1 N TYR A 458 O GLY A 503 SHEET 6 AA6 6 ARG A 481 ARG A 482 -1 O ARG A 482 N PHE A 457 SHEET 1 AA7 5 VAL A 426 ALA A 429 0 SHEET 2 AA7 5 ALA A 527 GLU A 532 1 O VAL A 531 N ILE A 427 SHEET 3 AA7 5 GLY A 510 CYS A 516 -1 N TRP A 512 O ILE A 530 SHEET 4 AA7 5 HIS A 448 LEU A 452 -1 N HIS A 451 O HIS A 515 SHEET 5 AA7 5 THR A 484 MET A 487 -1 O ALA A 485 N ILE A 450 SSBOND 1 CYS A 129 CYS A 550 1555 1555 2.09 SSBOND 2 CYS A 314 CYS A 351 1555 1555 2.07 LINK ND2 ASN A 60 C1 NAG B 1 1555 1555 1.44 LINK OD1 ASN A 103 C1 NAG C 1 1555 1555 1.48 LINK ND2 ASN A 216 C1 NAG A 614 1555 1555 1.35 LINK ND2 ASN A 400 C1 NAG D 1 1555 1555 1.39 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.24 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.19 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.22 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.26 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.29 LINK O4 NAG E 1 C1 BMA E 2 1555 1555 1.28 LINK NE2 HIS A 108 CU CU A 603 1555 1555 1.98 LINK ND1 HIS A 110 CU CU A 601 1555 1555 1.90 LINK NE2 HIS A 152 CU CU A 601 1555 1555 2.05 LINK NE2 HIS A 154 CU CU A 602 1555 1555 2.17 LINK ND1 HIS A 448 CU CU A 604 1555 1555 2.06 LINK NE2 HIS A 453 CU CU A 602 1555 1555 1.96 LINK NE2 HIS A 515 CU CU A 602 1555 1555 2.13 LINK SG CYS A 516 CU CU A 604 1555 1555 2.15 LINK NE2 HIS A 517 CU CU A 601 1555 1555 2.31 LINK ND1 HIS A 521 CU CU A 604 1555 1555 1.97 LINK CU CU A 601 O2 PER A 618 1555 1555 2.44 LINK CU CU A 602 O1 PER A 618 1555 1555 2.37 LINK CU CU A 603 O2 PER A 618 1555 1555 2.50 CISPEP 1 PHE A 79 PRO A 80 0 -2.99 CISPEP 2 VAL A 387 PRO A 388 0 -6.55 CRYST1 200.709 61.346 53.836 90.00 95.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004982 0.000000 0.000462 0.00000 SCALE2 0.000000 0.016301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018655 0.00000