HEADER RNA BINDING PROTEIN 30-JUL-16 5LMG TITLE STRUCTURE OF C-TERMINAL DOMAIN FROM S. CEREVISIAE PAT1 DECAPPING TITLE 2 ACTIVATOR BOUND TO DCP2 HLM10 PEPTIDE (REGION 954-970) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 437-796; COMPND 5 SYNONYM: DECAPPING ACTIVATOR AND TRANSLATIONAL REPRESSOR PAT1, COMPND 6 TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1,MRNA TURNOVER PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MRNA DECAPPING PROTEIN 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 956-969; COMPND 13 SYNONYM: DCP2 DECAPPING FACTOR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PAT1, MRT1, YCR077C, YCR77C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS PROTEIN PEPTIDE COMPLEX, ISOMERASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHARENTON,C.GAUDON-PLESSE,Z.FOURATI,V.TAVERNITI,R.BACK, AUTHOR 2 O.KOLESNIKOVA,B.SERAPHIN,M.GRAILLE REVDAT 6 10-JAN-24 5LMG 1 LINK REVDAT 5 26-SEP-18 5LMG 1 TITLE REVDAT 4 15-NOV-17 5LMG 1 JRNL REVDAT 3 08-NOV-17 5LMG 1 JRNL REVDAT 2 01-NOV-17 5LMG 1 JRNL REVDAT 1 16-AUG-17 5LMG 0 JRNL AUTH C.CHARENTON,C.GAUDON-PLESSE,Z.FOURATI,V.TAVERNITI,R.BACK, JRNL AUTH 2 O.KOLESNIKOVA,B.SERAPHIN,M.GRAILLE JRNL TITL A UNIQUE SURFACE ON PAT1 C-TERMINAL DOMAIN DIRECTLY JRNL TITL 2 INTERACTS WITH DCP2 DECAPPING ENZYME AND XRN1 5'-3' MRNA JRNL TITL 3 EXONUCLEASE IN YEAST. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E9493 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29078363 JRNL DOI 10.1073/PNAS.1711680114 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 59059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2953 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.04 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3294 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3129 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.15990 REMARK 3 B22 (A**2) : -3.62900 REMARK 3 B33 (A**2) : -12.53090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.153 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5524 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7413 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2050 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 161 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 745 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5524 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 754 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6592 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.30 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.7558 23.0367 37.0044 REMARK 3 T TENSOR REMARK 3 T11: -0.0771 T22: -0.0629 REMARK 3 T33: -0.0046 T12: -0.0068 REMARK 3 T13: -0.0227 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.5499 L22: 0.6122 REMARK 3 L33: 0.1786 L12: -0.2701 REMARK 3 L13: 0.0412 L23: 0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0660 S13: 0.0162 REMARK 3 S21: 0.0251 S22: 0.0160 S23: 0.0607 REMARK 3 S31: -0.0231 S32: -0.0408 S33: -0.0196 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 26.1930 7.3282 32.8533 REMARK 3 T TENSOR REMARK 3 T11: -0.1110 T22: -0.1182 REMARK 3 T33: -0.0184 T12: -0.0095 REMARK 3 T13: -0.0271 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.5286 L22: 1.4997 REMARK 3 L33: 0.4201 L12: -0.3011 REMARK 3 L13: 0.1082 L23: -0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0030 S13: -0.0145 REMARK 3 S21: -0.1235 S22: -0.0541 S23: 0.0895 REMARK 3 S31: 0.0210 S32: 0.0148 S33: 0.0854 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.3095 40.8835 16.4436 REMARK 3 T TENSOR REMARK 3 T11: -0.0793 T22: 0.0497 REMARK 3 T33: 0.0281 T12: 0.0479 REMARK 3 T13: -0.0009 T23: 0.1019 REMARK 3 L TENSOR REMARK 3 L11: 0.2127 L22: 0.2715 REMARK 3 L33: 0.3819 L12: -0.1644 REMARK 3 L13: -0.2044 L23: -0.1581 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.0381 S13: 0.0110 REMARK 3 S21: -0.0285 S22: 0.0150 S23: 0.0025 REMARK 3 S31: 0.0015 S32: 0.0074 S33: -0.0199 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28361 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2 ; 20 % PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297.1500K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.84300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.51450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.28100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.84300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.51450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.28100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.84300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.51450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.28100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.84300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.51450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.28100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 810 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 SER A 435 REMARK 465 SER A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 SER A 439 REMARK 465 SER A 440 REMARK 465 THR A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 ALA A 446 REMARK 465 ALA A 447 REMARK 465 VAL A 448 REMARK 465 ALA A 449 REMARK 465 SER A 450 REMARK 465 LYS A 451 REMARK 465 GLN A 452 REMARK 465 ARG A 453 REMARK 465 ARG A 454 REMARK 465 ARG A 455 REMARK 465 SER A 456 REMARK 465 SER A 457 REMARK 465 TYR A 458 REMARK 465 ALA A 459 REMARK 465 PHE A 460 REMARK 465 ASN A 461 REMARK 465 ASN A 462 REMARK 465 GLY A 463 REMARK 465 ASN A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 THR A 467 REMARK 465 GLN A 646 REMARK 465 ASP A 647 REMARK 465 SER A 648 REMARK 465 SER A 649 REMARK 465 ARG A 650 REMARK 465 SER A 651 REMARK 465 ASN A 652 REMARK 465 ILE A 653 REMARK 465 LEU A 654 REMARK 465 SER A 655 REMARK 465 SER A 656 REMARK 465 PRO A 657 REMARK 465 GLU A 658 REMARK 465 MET B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 SER B 435 REMARK 465 SER B 436 REMARK 465 GLY B 437 REMARK 465 SER B 438 REMARK 465 SER B 439 REMARK 465 SER B 440 REMARK 465 THR B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 SER B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 ALA B 447 REMARK 465 VAL B 448 REMARK 465 ALA B 449 REMARK 465 SER B 450 REMARK 465 LYS B 451 REMARK 465 GLN B 452 REMARK 465 ARG B 453 REMARK 465 ARG B 454 REMARK 465 ARG B 455 REMARK 465 SER B 456 REMARK 465 SER B 457 REMARK 465 TYR B 458 REMARK 465 ALA B 459 REMARK 465 PHE B 460 REMARK 465 ASN B 461 REMARK 465 ASN B 462 REMARK 465 GLY B 463 REMARK 465 ASN B 464 REMARK 465 GLY B 465 REMARK 465 ALA B 466 REMARK 465 THR B 467 REMARK 465 ASN B 468 REMARK 465 LEU B 469 REMARK 465 ASN B 470 REMARK 465 LYS B 471 REMARK 465 SER B 472 REMARK 465 TYR B 518 REMARK 465 ASP B 519 REMARK 465 VAL B 520 REMARK 465 LYS C 970 REMARK 465 THR D 957 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 675 -2.78 73.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 810 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 544 OD2 REMARK 620 2 ASP A 544 OD2 0.0 REMARK 620 3 HOH A 969 O 92.8 92.8 REMARK 620 4 HOH A 969 O 89.3 89.3 177.0 REMARK 620 5 HOH A1003 O 92.7 92.7 90.0 87.7 REMARK 620 6 HOH A1003 O 173.5 173.5 87.7 90.0 80.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 804 DBREF 5LMG A 435 796 UNP P25644 PAT1_YEAST 435 796 DBREF 5LMG B 435 796 UNP P25644 PAT1_YEAST 435 796 DBREF 5LMG C 957 970 UNP B3LNX5 B3LNX5_YEAS1 956 969 DBREF 5LMG D 957 970 UNP B3LNX5 B3LNX5_YEAS1 956 969 SEQADV 5LMG MET A 428 UNP P25644 INITIATING METHIONINE SEQADV 5LMG HIS A 429 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS A 430 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS A 431 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS A 432 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS A 433 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS A 434 UNP P25644 EXPRESSION TAG SEQADV 5LMG ALA A 706 UNP P25644 GLN 706 ENGINEERED MUTATION SEQADV 5LMG ALA A 713 UNP P25644 LEU 713 ENGINEERED MUTATION SEQADV 5LMG MET B 428 UNP P25644 INITIATING METHIONINE SEQADV 5LMG HIS B 429 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS B 430 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS B 431 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS B 432 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS B 433 UNP P25644 EXPRESSION TAG SEQADV 5LMG HIS B 434 UNP P25644 EXPRESSION TAG SEQADV 5LMG ALA B 706 UNP P25644 GLN 706 ENGINEERED MUTATION SEQADV 5LMG ALA B 713 UNP P25644 LEU 713 ENGINEERED MUTATION SEQRES 1 A 369 MET HIS HIS HIS HIS HIS HIS SER SER GLY SER SER SER SEQRES 2 A 369 THR GLY SER SER ALA ALA ALA VAL ALA SER LYS GLN ARG SEQRES 3 A 369 ARG ARG SER SER TYR ALA PHE ASN ASN GLY ASN GLY ALA SEQRES 4 A 369 THR ASN LEU ASN LYS SER GLY GLY LYS LYS PHE ILE LEU SEQRES 5 A 369 GLU LEU ILE GLU THR VAL TYR GLU GLU ILE LEU ASP LEU SEQRES 6 A 369 GLU ALA ASN LEU ARG ASN GLY GLN GLN THR ASP SER THR SEQRES 7 A 369 ALA MET TRP GLU ALA LEU HIS ILE ASP ASP SER SER TYR SEQRES 8 A 369 ASP VAL ASN PRO PHE ILE SER MET LEU SER PHE ASP LYS SEQRES 9 A 369 GLY ILE LYS ILE MET PRO ARG ILE PHE ASN PHE LEU ASP SEQRES 10 A 369 LYS GLN GLN LYS LEU LYS ILE LEU GLN LYS ILE PHE ASN SEQRES 11 A 369 GLU LEU SER HIS LEU GLN ILE ILE ILE LEU SER SER TYR SEQRES 12 A 369 LYS THR THR PRO LYS PRO THR LEU THR GLN LEU LYS LYS SEQRES 13 A 369 VAL ASP LEU PHE GLN MET ILE ILE LEU LYS ILE ILE VAL SEQRES 14 A 369 SER PHE LEU SER ASN ASN SER ASN PHE ILE GLU ILE MET SEQRES 15 A 369 GLY LEU LEU LEU GLN LEU ILE ARG ASN ASN ASN VAL SER SEQRES 16 A 369 PHE LEU THR THR SER LYS ILE GLY LEU ASN LEU ILE THR SEQRES 17 A 369 ILE LEU ILE SER ARG ALA ALA LEU ILE LYS GLN ASP SER SEQRES 18 A 369 SER ARG SER ASN ILE LEU SER SER PRO GLU ILE SER THR SEQRES 19 A 369 TRP ASN GLU ILE TYR ASP LYS LEU PHE THR SER LEU GLU SEQRES 20 A 369 SER LYS ILE GLN LEU ILE PHE PRO PRO ARG GLU TYR ASN SEQRES 21 A 369 ASP HIS ILE MET ARG LEU GLN ASN ASP LYS PHE MET ASP SEQRES 22 A 369 GLU ALA TYR ILE TRP ALA PHE LEU ALA SER LEU ALA ALA SEQRES 23 A 369 SER GLY LYS LEU ASN HIS GLN ARG ILE ILE ILE ASP GLU SEQRES 24 A 369 VAL ARG ASP GLU ILE PHE ALA THR ILE ASN GLU ALA GLU SEQRES 25 A 369 THR LEU GLN LYS LYS GLU LYS GLU LEU SER VAL LEU PRO SEQRES 26 A 369 GLN ARG SER GLN GLU LEU ASP THR GLU LEU LYS SER ILE SEQRES 27 A 369 ILE TYR ASN LYS GLU LYS LEU TYR GLN ASP LEU ASN LEU SEQRES 28 A 369 PHE LEU ASN VAL MET GLY LEU VAL TYR ARG ASP GLY GLU SEQRES 29 A 369 ILE SER GLU LEU LYS SEQRES 1 B 369 MET HIS HIS HIS HIS HIS HIS SER SER GLY SER SER SER SEQRES 2 B 369 THR GLY SER SER ALA ALA ALA VAL ALA SER LYS GLN ARG SEQRES 3 B 369 ARG ARG SER SER TYR ALA PHE ASN ASN GLY ASN GLY ALA SEQRES 4 B 369 THR ASN LEU ASN LYS SER GLY GLY LYS LYS PHE ILE LEU SEQRES 5 B 369 GLU LEU ILE GLU THR VAL TYR GLU GLU ILE LEU ASP LEU SEQRES 6 B 369 GLU ALA ASN LEU ARG ASN GLY GLN GLN THR ASP SER THR SEQRES 7 B 369 ALA MET TRP GLU ALA LEU HIS ILE ASP ASP SER SER TYR SEQRES 8 B 369 ASP VAL ASN PRO PHE ILE SER MET LEU SER PHE ASP LYS SEQRES 9 B 369 GLY ILE LYS ILE MET PRO ARG ILE PHE ASN PHE LEU ASP SEQRES 10 B 369 LYS GLN GLN LYS LEU LYS ILE LEU GLN LYS ILE PHE ASN SEQRES 11 B 369 GLU LEU SER HIS LEU GLN ILE ILE ILE LEU SER SER TYR SEQRES 12 B 369 LYS THR THR PRO LYS PRO THR LEU THR GLN LEU LYS LYS SEQRES 13 B 369 VAL ASP LEU PHE GLN MET ILE ILE LEU LYS ILE ILE VAL SEQRES 14 B 369 SER PHE LEU SER ASN ASN SER ASN PHE ILE GLU ILE MET SEQRES 15 B 369 GLY LEU LEU LEU GLN LEU ILE ARG ASN ASN ASN VAL SER SEQRES 16 B 369 PHE LEU THR THR SER LYS ILE GLY LEU ASN LEU ILE THR SEQRES 17 B 369 ILE LEU ILE SER ARG ALA ALA LEU ILE LYS GLN ASP SER SEQRES 18 B 369 SER ARG SER ASN ILE LEU SER SER PRO GLU ILE SER THR SEQRES 19 B 369 TRP ASN GLU ILE TYR ASP LYS LEU PHE THR SER LEU GLU SEQRES 20 B 369 SER LYS ILE GLN LEU ILE PHE PRO PRO ARG GLU TYR ASN SEQRES 21 B 369 ASP HIS ILE MET ARG LEU GLN ASN ASP LYS PHE MET ASP SEQRES 22 B 369 GLU ALA TYR ILE TRP ALA PHE LEU ALA SER LEU ALA ALA SEQRES 23 B 369 SER GLY LYS LEU ASN HIS GLN ARG ILE ILE ILE ASP GLU SEQRES 24 B 369 VAL ARG ASP GLU ILE PHE ALA THR ILE ASN GLU ALA GLU SEQRES 25 B 369 THR LEU GLN LYS LYS GLU LYS GLU LEU SER VAL LEU PRO SEQRES 26 B 369 GLN ARG SER GLN GLU LEU ASP THR GLU LEU LYS SER ILE SEQRES 27 B 369 ILE TYR ASN LYS GLU LYS LEU TYR GLN ASP LEU ASN LEU SEQRES 28 B 369 PHE LEU ASN VAL MET GLY LEU VAL TYR ARG ASP GLY GLU SEQRES 29 B 369 ILE SER GLU LEU LYS SEQRES 1 C 14 THR SER GLY SER ASN GLU LEU LEU SER ILE LEU HIS ARG SEQRES 2 C 14 LYS SEQRES 1 D 14 THR SER GLY SER ASN GLU LEU LEU SER ILE LEU HIS ARG SEQRES 2 D 14 LYS HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET MG A 810 1 HET TRS A 811 8 HET EDO B 801 4 HET EDO B 802 4 HET EDO B 803 4 HET EDO B 804 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 5 EDO 13(C2 H6 O2) FORMUL 14 MG MG 2+ FORMUL 15 TRS C4 H12 N O3 1+ FORMUL 20 HOH *196(H2 O) HELIX 1 AA1 ASN A 468 GLY A 473 5 6 HELIX 2 AA2 GLY A 474 ASN A 498 1 25 HELIX 3 AA3 SER A 504 ALA A 510 1 7 HELIX 4 AA4 ASN A 521 LEU A 527 1 7 HELIX 5 AA5 PHE A 529 PHE A 542 1 14 HELIX 6 AA6 ASP A 544 GLU A 558 1 15 HELIX 7 AA7 LEU A 559 HIS A 561 5 3 HELIX 8 AA8 LEU A 562 SER A 569 1 8 HELIX 9 AA9 THR A 577 ASN A 602 1 26 HELIX 10 AB1 ASN A 604 ASN A 619 1 16 HELIX 11 AB2 ASN A 620 THR A 625 1 6 HELIX 12 AB3 SER A 627 ILE A 644 1 18 HELIX 13 AB4 SER A 660 GLU A 674 1 15 HELIX 14 AB5 LYS A 676 PHE A 681 5 6 HELIX 15 AB6 PRO A 683 ASN A 695 1 13 HELIX 16 AB7 GLU A 701 SER A 714 1 14 HELIX 17 AB8 LYS A 716 VAL A 750 1 35 HELIX 18 AB9 SER A 755 MET A 783 1 29 HELIX 19 AC1 GLY B 474 ASN B 498 1 25 HELIX 20 AC2 SER B 504 LEU B 511 1 8 HELIX 21 AC3 PRO B 522 LEU B 527 1 6 HELIX 22 AC4 PHE B 529 ILE B 535 1 7 HELIX 23 AC5 ILE B 535 PHE B 542 1 8 HELIX 24 AC6 ASP B 544 GLU B 558 1 15 HELIX 25 AC7 LEU B 559 HIS B 561 5 3 HELIX 26 AC8 LEU B 562 SER B 569 1 8 HELIX 27 AC9 THR B 577 ASN B 601 1 25 HELIX 28 AD1 ASN B 604 ASN B 619 1 16 HELIX 29 AD2 ASN B 620 THR B 626 1 7 HELIX 30 AD3 SER B 627 SER B 649 1 23 HELIX 31 AD4 ARG B 650 ASN B 652 5 3 HELIX 32 AD5 SER B 656 GLU B 674 1 19 HELIX 33 AD6 LYS B 676 PHE B 681 5 6 HELIX 34 AD7 PRO B 683 ASN B 695 1 13 HELIX 35 AD8 GLU B 701 GLY B 715 1 15 HELIX 36 AD9 LYS B 716 VAL B 727 1 12 HELIX 37 AE1 VAL B 727 VAL B 750 1 24 HELIX 38 AE2 SER B 755 MET B 783 1 29 HELIX 39 AE3 SER C 958 HIS C 968 1 11 HELIX 40 AE4 GLY D 959 HIS D 968 1 10 SHEET 1 AA1 2 LEU A 785 ARG A 788 0 SHEET 2 AA1 2 GLU A 791 GLU A 794 -1 O SER A 793 N VAL A 786 SHEET 1 AA2 2 LEU B 785 ARG B 788 0 SHEET 2 AA2 2 GLU B 791 GLU B 794 -1 O SER B 793 N VAL B 786 LINK OD2 ASP A 544 MG MG A 810 1555 1555 2.16 LINK OD2 ASP A 544 MG MG A 810 1555 2555 2.16 LINK MG MG A 810 O HOH A 969 1555 1555 2.14 LINK MG MG A 810 O HOH A 969 1555 2555 2.14 LINK MG MG A 810 O HOH A1003 1555 1555 2.31 LINK MG MG A 810 O HOH A1003 1555 2555 2.31 SITE 1 AC1 3 GLU A 487 ASP A 491 EDO A 803 SITE 1 AC2 4 ASP A 729 GLU B 674 ASN B 718 HIS B 719 SITE 1 AC3 4 GLU A 488 ASP A 491 ALA A 506 EDO A 801 SITE 1 AC4 7 PHE A 681 PRO A 682 ASN A 687 GLU A 701 SITE 2 AC4 7 GLU A 730 EDO A 809 HOH A 916 SITE 1 AC5 4 MET A 589 HOH A 937 ASN B 632 TYR B 703 SITE 1 AC6 3 ASN A 632 ILE A 636 ALA A 706 SITE 1 AC7 3 LYS A 628 TYR A 686 HOH A 952 SITE 1 AC8 6 ASN A 663 TYR A 666 ASP A 667 SER A 714 SITE 2 AC8 6 LYS A 716 HIS A 719 SITE 1 AC9 6 THR A 734 GLU A 737 LEU A 772 EDO A 804 SITE 2 AC9 6 HOH A 905 HOH A 916 SITE 1 AD1 3 ASP A 544 HOH A 969 HOH A1003 SITE 1 AD2 8 LYS A 582 GLN A 694 HOH A 907 HOH A 917 SITE 2 AD2 8 HOH A 928 HOH A 942 GLN B 694 ASP B 696 SITE 1 AD3 6 LYS A 531 TYR B 773 GLN B 774 ASN B 777 SITE 2 AD3 6 HOH B 910 HOH B 958 SITE 1 AD4 1 ARG B 538 SITE 1 AD5 6 SER A 600 ASN A 601 LYS B 548 SER B 597 SITE 2 AD5 6 PHE B 598 HOH B 908 SITE 1 AD6 5 PRO B 682 ASN B 687 GLU B 701 GLU B 730 SITE 2 AD6 5 HOH B 929 CRYST1 97.686 123.029 126.562 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007901 0.00000