HEADER PROTEIN TRANSPORT 08-AUG-16 5LO8 TITLE THE C2B DOMAIN OF RABPHILIN 3A IN COMPLEX WITH PI(4,5)P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RABPHILIN-3A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C2B DOMAIN, UNP RESIDUES 536-680; COMPND 5 SYNONYM: EXOPHILIN-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RPH3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS VESICLE FUSION, PIP2, C2 DOMAIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.FERRER-ORTA,N.VERDAGUER REVDAT 3 10-JAN-24 5LO8 1 LINK REVDAT 2 06-DEC-17 5LO8 1 JRNL REVDAT 1 21-JUN-17 5LO8 0 JRNL AUTH C.FERRER-ORTA,M.D.PEREZ-SANCHEZ,T.CORONADO-PARRA,C.SILVA, JRNL AUTH 2 D.LOPEZ-MARTINEZ,J.BALTANAS-COPADO,J.C.GOMEZ-FERNANDEZ, JRNL AUTH 3 S.CORBALAN-GARCIA,N.VERDAGUER JRNL TITL STRUCTURAL CHARACTERIZATION OF THE RABPHILIN-3A-SNAP25 JRNL TITL 2 INTERACTION. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E5343 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28634303 JRNL DOI 10.1073/PNAS.1702542114 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2666: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 98.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 11781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7678 - 3.9776 0.94 2881 141 0.2482 0.2700 REMARK 3 2 3.9776 - 3.1584 0.94 2797 173 0.2532 0.2553 REMARK 3 3 3.1584 - 2.7595 0.93 2750 136 0.2980 0.3081 REMARK 3 4 2.7595 - 2.5074 0.91 2652 148 0.3072 0.3462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2474 REMARK 3 ANGLE : 0.592 3310 REMARK 3 CHIRALITY : 0.042 339 REMARK 3 PLANARITY : 0.003 399 REMARK 3 DIHEDRAL : 7.001 1455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 118.9748 20.3093 -49.0305 REMARK 3 T TENSOR REMARK 3 T11: 0.2775 T22: 0.2854 REMARK 3 T33: 0.0657 T12: -0.0298 REMARK 3 T13: -0.0100 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0837 L22: 0.0741 REMARK 3 L33: 0.1597 L12: 0.0227 REMARK 3 L13: 0.1150 L23: 0.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0420 S13: -0.0080 REMARK 3 S21: -0.0269 S22: 0.0156 S23: 0.0123 REMARK 3 S31: 0.0176 S32: -0.0203 S33: -0.0281 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4I REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11782 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 65.422 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER CCP4I REMARK 200 STARTING MODEL: 2CM5 REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 20.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350 0.1M AMMONIUM SULFATE 50MM REMARK 280 TRIS PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 519 REMARK 465 MET A 520 REMARK 465 ALA A 521 REMARK 465 SER A 522 REMARK 465 MET A 523 REMARK 465 THR A 524 REMARK 465 GLY A 525 REMARK 465 GLY A 526 REMARK 465 GLN A 527 REMARK 465 GLN A 528 REMARK 465 MET A 529 REMARK 465 GLY A 530 REMARK 465 ARG A 531 REMARK 465 GLY A 532 REMARK 465 SER A 533 REMARK 465 ASP A 534 REMARK 465 PHE A 535 REMARK 465 GLY A 536 REMARK 465 ASP A 537 REMARK 465 ILE A 538 REMARK 465 GLU A 539 REMARK 465 HIS A 680 REMARK 465 HIS B 519 REMARK 465 MET B 520 REMARK 465 ALA B 521 REMARK 465 SER B 522 REMARK 465 MET B 523 REMARK 465 THR B 524 REMARK 465 GLY B 525 REMARK 465 GLY B 526 REMARK 465 GLN B 527 REMARK 465 GLN B 528 REMARK 465 MET B 529 REMARK 465 GLY B 530 REMARK 465 ARG B 531 REMARK 465 GLY B 532 REMARK 465 SER B 533 REMARK 465 ASP B 534 REMARK 465 PHE B 535 REMARK 465 GLY B 536 REMARK 465 ASN B 679 REMARK 465 HIS B 680 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 LYS B 591 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 575 -167.09 -115.09 REMARK 500 ASP A 577 76.96 -118.96 REMARK 500 TRP A 583 110.50 -164.61 REMARK 500 MET A 588 18.08 55.13 REMARK 500 LYS A 591 7.49 -66.89 REMARK 500 LYS A 601 71.05 52.95 REMARK 500 LYS A 667 116.72 -160.04 REMARK 500 GLN A 676 76.44 -167.02 REMARK 500 ASP B 577 69.73 -109.07 REMARK 500 PRO B 586 -88.43 -76.81 REMARK 500 LYS B 601 82.78 61.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 570 O REMARK 620 2 ASP A 571 OD1 84.8 REMARK 620 3 ASP A 631 OD2 92.6 74.3 REMARK 620 4 ASP A 633 OD1 155.5 77.4 66.6 REMARK 620 5 ASP A 633 OD2 156.2 116.7 102.7 47.6 REMARK 620 6 ASP A 639 OD1 63.0 139.7 83.2 123.4 100.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 571 OD1 REMARK 620 2 ASP A 571 OD2 52.3 REMARK 620 3 ASP A 577 OD2 130.8 80.5 REMARK 620 4 ASP A 631 OD1 90.7 72.2 86.3 REMARK 620 5 TYR A 632 O 158.9 144.1 69.8 85.9 REMARK 620 6 ASP A 633 OD1 80.2 128.5 148.9 92.3 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 570 O REMARK 620 2 ASP B 571 OD1 98.1 REMARK 620 3 ASP B 631 OD2 118.1 74.1 REMARK 620 4 ASP B 633 OD2 168.9 71.1 62.2 REMARK 620 5 ASP B 639 OD2 117.1 144.1 82.7 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 571 OD1 REMARK 620 2 ASP B 571 OD2 54.6 REMARK 620 3 ASP B 577 OD2 137.5 91.6 REMARK 620 4 ASP B 631 OD1 100.1 103.3 113.6 REMARK 620 5 ASP B 631 OD2 67.7 104.7 154.1 43.6 REMARK 620 6 TYR B 632 O 144.5 159.2 67.8 83.2 93.7 REMARK 620 7 ASP B 633 OD1 73.1 106.0 96.6 136.8 98.0 80.5 REMARK 620 8 ASP B 633 OD2 66.9 121.1 133.0 92.1 53.4 77.8 45.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues GOL B 704 and PIO B REMARK 800 706 DBREF 5LO8 A 536 680 UNP P47709 RP3A_RAT 536 680 DBREF 5LO8 B 536 680 UNP P47709 RP3A_RAT 536 680 SEQADV 5LO8 HIS A 519 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET A 520 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ALA A 521 UNP P47709 EXPRESSION TAG SEQADV 5LO8 SER A 522 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET A 523 UNP P47709 EXPRESSION TAG SEQADV 5LO8 THR A 524 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY A 525 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY A 526 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLN A 527 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLN A 528 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET A 529 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY A 530 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ARG A 531 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY A 532 UNP P47709 EXPRESSION TAG SEQADV 5LO8 SER A 533 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ASP A 534 UNP P47709 EXPRESSION TAG SEQADV 5LO8 PHE A 535 UNP P47709 EXPRESSION TAG SEQADV 5LO8 HIS B 519 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET B 520 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ALA B 521 UNP P47709 EXPRESSION TAG SEQADV 5LO8 SER B 522 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET B 523 UNP P47709 EXPRESSION TAG SEQADV 5LO8 THR B 524 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY B 525 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY B 526 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLN B 527 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLN B 528 UNP P47709 EXPRESSION TAG SEQADV 5LO8 MET B 529 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY B 530 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ARG B 531 UNP P47709 EXPRESSION TAG SEQADV 5LO8 GLY B 532 UNP P47709 EXPRESSION TAG SEQADV 5LO8 SER B 533 UNP P47709 EXPRESSION TAG SEQADV 5LO8 ASP B 534 UNP P47709 EXPRESSION TAG SEQADV 5LO8 PHE B 535 UNP P47709 EXPRESSION TAG SEQRES 1 A 162 HIS MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG SEQRES 2 A 162 GLY SER ASP PHE GLY ASP ILE GLU GLU ARG GLY LYS ILE SEQRES 3 A 162 LEU VAL SER LEU MET TYR SER THR GLN GLN GLY GLY LEU SEQRES 4 A 162 ILE VAL GLY ILE ILE ARG CYS VAL HIS LEU ALA ALA MET SEQRES 5 A 162 ASP ALA ASN GLY TYR SER ASP PRO PHE VAL LYS LEU TRP SEQRES 6 A 162 LEU LYS PRO ASP MET GLY LYS LYS ALA LYS HIS LYS THR SEQRES 7 A 162 GLN ILE LYS LYS LYS THR LEU ASN PRO GLU PHE ASN GLU SEQRES 8 A 162 GLU PHE PHE TYR ASP ILE LYS HIS SER ASP LEU ALA LYS SEQRES 9 A 162 LYS SER LEU ASP ILE SER VAL TRP ASP TYR ASP ILE GLY SEQRES 10 A 162 LYS SER ASN ASP TYR ILE GLY GLY CYS GLN LEU GLY ILE SEQRES 11 A 162 SER ALA LYS GLY GLU ARG LEU LYS HIS TRP TYR GLU CYS SEQRES 12 A 162 LEU LYS ASN LYS ASP LYS LYS ILE GLU ARG TRP HIS GLN SEQRES 13 A 162 LEU GLN ASN GLU ASN HIS SEQRES 1 B 162 HIS MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG SEQRES 2 B 162 GLY SER ASP PHE GLY ASP ILE GLU GLU ARG GLY LYS ILE SEQRES 3 B 162 LEU VAL SER LEU MET TYR SER THR GLN GLN GLY GLY LEU SEQRES 4 B 162 ILE VAL GLY ILE ILE ARG CYS VAL HIS LEU ALA ALA MET SEQRES 5 B 162 ASP ALA ASN GLY TYR SER ASP PRO PHE VAL LYS LEU TRP SEQRES 6 B 162 LEU LYS PRO ASP MET GLY LYS LYS ALA LYS HIS LYS THR SEQRES 7 B 162 GLN ILE LYS LYS LYS THR LEU ASN PRO GLU PHE ASN GLU SEQRES 8 B 162 GLU PHE PHE TYR ASP ILE LYS HIS SER ASP LEU ALA LYS SEQRES 9 B 162 LYS SER LEU ASP ILE SER VAL TRP ASP TYR ASP ILE GLY SEQRES 10 B 162 LYS SER ASN ASP TYR ILE GLY GLY CYS GLN LEU GLY ILE SEQRES 11 B 162 SER ALA LYS GLY GLU ARG LEU LYS HIS TRP TYR GLU CYS SEQRES 12 B 162 LEU LYS ASN LYS ASP LYS LYS ILE GLU ARG TRP HIS GLN SEQRES 13 B 162 LEU GLN ASN GLU ASN HIS HET CA A 701 1 HET CA A 702 1 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET SO4 A 707 5 HET PIO A 708 47 HET CA B 701 1 HET CA B 702 1 HET GOL B 703 6 HET GOL B 704 6 HET GOL B 705 6 HET PIO B 706 47 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PIO [(2R)-2-OCTANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R,6S)-2, HETNAM 2 PIO 3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY-CYCLOHEXYL]OXY- HETNAM 3 PIO PHOSPHORYL]OXY-PROPYL] OCTANOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PIO DIOCTANOYL L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL 4,5- HETSYN 2 PIO DIPHOSPHATE FORMUL 3 CA 4(CA 2+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 10 PIO 2(C25 H49 O19 P3) FORMUL 17 HOH *29(H2 O) HELIX 1 AA1 PRO A 586 MET A 588 5 3 HELIX 2 AA2 LYS A 616 ALA A 621 1 6 HELIX 3 AA3 GLY A 652 ASN A 664 1 13 HELIX 4 AA4 LYS B 616 ALA B 621 1 6 HELIX 5 AA5 GLU B 653 ASN B 664 1 12 SHEET 1 AA1 4 GLU A 606 TYR A 613 0 SHEET 2 AA1 4 GLY A 556 VAL A 565 -1 N ILE A 561 O GLU A 609 SHEET 3 AA1 4 LYS A 543 SER A 551 -1 N MET A 549 O ILE A 558 SHEET 4 AA1 4 ILE A 669 GLN A 674 -1 O ARG A 671 N VAL A 546 SHEET 1 AA2 4 LYS A 593 LYS A 595 0 SHEET 2 AA2 4 PRO A 578 LEU A 584 -1 N LEU A 582 O HIS A 594 SHEET 3 AA2 4 LEU A 625 ASP A 631 -1 O TRP A 630 N PHE A 579 SHEET 4 AA2 4 ASP A 639 LEU A 646 -1 O ASP A 639 N ASP A 631 SHEET 1 AA3 4 GLU B 606 TYR B 613 0 SHEET 2 AA3 4 GLY B 556 VAL B 565 -1 N VAL B 559 O PHE B 611 SHEET 3 AA3 4 LYS B 543 SER B 551 -1 N SER B 547 O GLY B 560 SHEET 4 AA3 4 ILE B 669 GLN B 674 -1 O ILE B 669 N LEU B 548 SHEET 1 AA4 4 LYS B 593 LYS B 595 0 SHEET 2 AA4 4 PRO B 578 LYS B 585 -1 N LEU B 582 O HIS B 594 SHEET 3 AA4 4 SER B 624 ASP B 631 -1 O TRP B 630 N PHE B 579 SHEET 4 AA4 4 ASP B 639 LEU B 646 -1 O CYS B 644 N ILE B 627 LINK O2 GOL B 704 C8B PIO B 706 1555 1554 1.37 LINK O MET A 570 CA CA A 701 1555 1555 2.78 LINK OD1 ASP A 571 CA CA A 701 1555 1555 2.38 LINK OD1 ASP A 571 CA CA A 702 1555 1555 2.49 LINK OD2 ASP A 571 CA CA A 702 1555 1555 2.49 LINK OD2 ASP A 577 CA CA A 702 1555 1555 2.39 LINK OD2 ASP A 631 CA CA A 701 1555 1555 2.60 LINK OD1 ASP A 631 CA CA A 702 1555 1555 2.78 LINK O TYR A 632 CA CA A 702 1555 1555 2.61 LINK OD1 ASP A 633 CA CA A 701 1555 1555 2.73 LINK OD2 ASP A 633 CA CA A 701 1555 1555 2.71 LINK OD1 ASP A 633 CA CA A 702 1555 1555 2.48 LINK OD1 ASP A 639 CA CA A 701 1555 1555 2.75 LINK O MET B 570 CA CA B 702 1555 1555 2.94 LINK OD1 ASP B 571 CA CA B 701 1555 1555 2.40 LINK OD2 ASP B 571 CA CA B 701 1555 1555 2.40 LINK OD1 ASP B 571 CA CA B 702 1555 1555 2.54 LINK OD2 ASP B 577 CA CA B 701 1555 1555 2.94 LINK OD1 ASP B 631 CA CA B 701 1555 1555 2.47 LINK OD2 ASP B 631 CA CA B 701 1555 1555 3.17 LINK OD2 ASP B 631 CA CA B 702 1555 1555 2.72 LINK O TYR B 632 CA CA B 701 1555 1555 2.38 LINK OD1 ASP B 633 CA CA B 701 1555 1555 2.54 LINK OD2 ASP B 633 CA CA B 701 1555 1555 3.03 LINK OD2 ASP B 633 CA CA B 702 1555 1555 2.68 LINK OD2 ASP B 639 CA CA B 702 1555 1555 2.65 CISPEP 1 LYS B 585 PRO B 586 0 0.59 SITE 1 AC1 5 MET A 570 ASP A 571 ASP A 631 ASP A 633 SITE 2 AC1 5 ASP A 639 SITE 1 AC2 6 ASP A 571 ASP A 577 ASP A 631 TYR A 632 SITE 2 AC2 6 ASP A 633 SO4 A 707 SITE 1 AC3 2 ASN A 608 GLU A 610 SITE 1 AC4 6 HIS A 594 LYS A 595 THR A 602 ASN A 604 SITE 2 AC4 6 PRO A 605 GLU A 606 SITE 1 AC5 5 ASN A 677 ASN A 679 GLN B 676 ASN B 677 SITE 2 AC5 5 GLU B 678 SITE 1 AC6 3 GLU A 606 GLU A 609 GLU A 610 SITE 1 AC7 6 GLN A 553 ASP A 571 ASP A 633 ILE A 634 SITE 2 AC7 6 GLY A 635 CA A 702 SITE 1 AC8 15 TYR A 575 LYS A 581 LYS A 590 LYS A 595 SITE 2 AC8 15 LYS A 601 HIS A 617 TYR A 659 LEU A 662 SITE 3 AC8 15 LYS A 663 ASN A 664 SER B 618 ALA B 621 SITE 4 AC8 15 ILE B 648 SER B 649 TYR B 659 SITE 1 AC9 5 ASP B 571 ASP B 577 ASP B 631 TYR B 632 SITE 2 AC9 5 ASP B 633 SITE 1 AD1 5 MET B 570 ASP B 571 ASP B 631 ASP B 633 SITE 2 AD1 5 ASP B 639 SITE 1 AD2 4 SER A 649 TRP B 630 SER B 637 ASN B 638 SITE 1 AD3 1 MET B 570 SITE 1 AD4 10 LYS A 622 TYR B 550 LYS B 581 LYS B 590 SITE 2 AD4 10 LYS B 595 LYS B 601 HIS B 617 SER B 618 SITE 3 AD4 10 ASN B 638 HOH B 802 CRYST1 92.520 92.520 40.020 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024988 0.00000