HEADER TRANSFERASE 12-AUG-16 5LPA TITLE AADA E87Q IN COMPLEX WITH ATP, CALCIUM AND DIHYDROSTREPTOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTOMYCIN 3''-ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.47; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 ATCC: 99287; SOURCE 6 GENE: AADA, STM1264; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT KEYWDS TRANSFERASE, AMINOGLYCOSIDE ADENYL TRANSFERASE, ANT(3'')9, ANTIBIOTIC KEYWDS 2 RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.STERN,S.E.VAN DER VERREN,M.SELMER REVDAT 3 10-JAN-24 5LPA 1 LINK REVDAT 2 12-JUN-19 5LPA 1 JRNL REVDAT 1 17-JAN-18 5LPA 0 JRNL AUTH A.L.STERN,S.E.VAN DER VERREN,S.KANCHUGAL P,J.NASVALL, JRNL AUTH 2 H.GUTIERREZ-DE-TERAN,M.SELMER JRNL TITL STRUCTURAL MECHANISM OF AADA, A DUAL-SPECIFICITY JRNL TITL 2 AMINOGLYCOSIDE ADENYLYLTRANSFERASE FROMSALMONELLA ENTERICA. JRNL REF J.BIOL.CHEM. V. 293 11481 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29871922 JRNL DOI 10.1074/JBC.RA118.003989 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,J.NASVALL,S.WU,D.I.ANDERSSON,M.SELMER REMARK 1 TITL STRUCTURE OF AADA FROM SALMONELLA ENTERICA: A MONOMERIC REMARK 1 TITL 2 AMINOGLYCOSIDE (3'')(9) ADENYLTRANSFERASE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 71 2267 2015 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 26527143 REMARK 1 DOI 10.1107/S1399004715016429 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 120743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 5960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4606 - 4.3485 1.00 3784 224 0.1559 0.1698 REMARK 3 2 4.3485 - 3.4521 1.00 3816 220 0.1449 0.1531 REMARK 3 3 3.4521 - 3.0159 1.00 3802 223 0.1559 0.1815 REMARK 3 4 3.0159 - 2.7402 1.00 3782 210 0.1606 0.1751 REMARK 3 5 2.7402 - 2.5438 1.00 3881 201 0.1501 0.1777 REMARK 3 6 2.5438 - 2.3939 1.00 3799 184 0.1451 0.1749 REMARK 3 7 2.3939 - 2.2740 1.00 3826 216 0.1396 0.1806 REMARK 3 8 2.2740 - 2.1750 1.00 3852 147 0.1326 0.1714 REMARK 3 9 2.1750 - 2.0913 1.00 3837 186 0.1382 0.1882 REMARK 3 10 2.0913 - 2.0191 1.00 3791 216 0.1251 0.1526 REMARK 3 11 2.0191 - 1.9560 1.00 3886 174 0.1265 0.1736 REMARK 3 12 1.9560 - 1.9001 1.00 3815 212 0.1359 0.1928 REMARK 3 13 1.9001 - 1.8500 1.00 3821 194 0.1348 0.1675 REMARK 3 14 1.8500 - 1.8049 1.00 3813 210 0.1213 0.1507 REMARK 3 15 1.8049 - 1.7639 1.00 3849 172 0.1201 0.1828 REMARK 3 16 1.7639 - 1.7263 1.00 3799 230 0.1190 0.1610 REMARK 3 17 1.7263 - 1.6918 1.00 3816 184 0.1128 0.1581 REMARK 3 18 1.6918 - 1.6599 1.00 3849 216 0.1202 0.1684 REMARK 3 19 1.6599 - 1.6302 1.00 3832 179 0.1253 0.1736 REMARK 3 20 1.6302 - 1.6026 1.00 3860 176 0.1302 0.1856 REMARK 3 21 1.6026 - 1.5767 1.00 3766 202 0.1433 0.1941 REMARK 3 22 1.5767 - 1.5525 1.00 3914 188 0.1578 0.2034 REMARK 3 23 1.5525 - 1.5297 1.00 3806 220 0.1615 0.2375 REMARK 3 24 1.5297 - 1.5081 1.00 3735 226 0.1636 0.2278 REMARK 3 25 1.5081 - 1.4877 1.00 3929 160 0.1728 0.2053 REMARK 3 26 1.4877 - 1.4684 1.00 3819 194 0.1818 0.2564 REMARK 3 27 1.4684 - 1.4500 1.00 3745 206 0.1890 0.2527 REMARK 3 28 1.4500 - 1.4326 1.00 3874 208 0.2022 0.2396 REMARK 3 29 1.4326 - 1.4159 1.00 3846 182 0.2194 0.2480 REMARK 3 30 1.4159 - 1.4000 1.00 3839 200 0.2231 0.2673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4804 REMARK 3 ANGLE : 1.381 6616 REMARK 3 CHIRALITY : 0.099 756 REMARK 3 PLANARITY : 0.008 872 REMARK 3 DIHEDRAL : 15.763 1850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.442 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.190 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.18 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 6000, 0.2 M CALCIUM REMARK 280 CHLORIDE, 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.18800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.59400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 263 REMARK 465 HIS A 270 REMARK 465 MET B 1 REMARK 465 LYS B 263 REMARK 465 HIS B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 HIS A 265 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 269 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 HIS B 265 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 150.63 -47.73 REMARK 500 GLN A 174 -46.22 -135.60 REMARK 500 GLU A 235 128.18 -170.94 REMARK 500 GLN B 174 -46.27 -133.84 REMARK 500 GLU B 235 126.18 -171.77 REMARK 500 HIS B 265 -10.23 77.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 6.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 49 OD1 74.0 REMARK 620 3 ASP A 49 OD2 117.7 47.8 REMARK 620 4 ATP A 301 O2G 82.1 152.2 159.5 REMARK 620 5 ATP A 301 O2B 161.5 124.4 80.3 79.6 REMARK 620 6 ATP A 301 O2A 100.6 86.0 96.1 84.5 80.6 REMARK 620 7 HOH A 454 O 91.1 105.0 85.2 89.3 85.8 165.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 49 OD1 79.9 REMARK 620 3 GLN A 87 OE1 94.7 123.4 REMARK 620 4 ATP A 301 O2A 106.6 86.4 146.4 REMARK 620 5 HOH A 411 O 62.9 130.1 93.2 74.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD1 REMARK 620 2 ASP B 49 OD1 74.5 REMARK 620 3 ASP B 49 OD2 118.2 47.8 REMARK 620 4 ATP B 301 O2G 82.4 153.0 158.7 REMARK 620 5 ATP B 301 O1B 160.4 125.0 80.8 78.3 REMARK 620 6 ATP B 301 O1A 100.4 86.6 96.6 84.0 80.7 REMARK 620 7 HOH B 468 O 91.6 104.7 84.8 89.5 85.2 165.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD2 REMARK 620 2 ASP B 49 OD1 80.0 REMARK 620 3 GLN B 87 OE1 94.3 120.8 REMARK 620 4 ATP B 301 O1A 106.3 86.8 148.4 REMARK 620 5 HOH B 416 O 62.0 129.9 94.9 74.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 71R A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 71R B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 307 DBREF 5LPA A 1 262 UNP Q8ZPX9 Q8ZPX9_SALTY 1 262 DBREF 5LPA B 1 262 UNP Q8ZPX9 Q8ZPX9_SALTY 1 262 SEQADV 5LPA GLN A 87 UNP Q8ZPX9 GLU 87 ENGINEERED MUTATION SEQADV 5LPA LYS A 263 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA GLY A 264 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 265 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 266 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 267 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 268 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 269 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS A 270 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA GLN B 87 UNP Q8ZPX9 GLU 87 ENGINEERED MUTATION SEQADV 5LPA LYS B 263 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA GLY B 264 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 265 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 266 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 267 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 268 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 269 UNP Q8ZPX9 EXPRESSION TAG SEQADV 5LPA HIS B 270 UNP Q8ZPX9 EXPRESSION TAG SEQRES 1 A 270 MET THR LEU SER ILE PRO PRO SER ILE GLN CME GLN THR SEQRES 2 A 270 GLU ALA ALA CME ARG LEU ILE THR ARG VAL THR GLY ASP SEQRES 3 A 270 THR LEU ARG ALA ILE HIS LEU TYR GLY SER ALA VAL ALA SEQRES 4 A 270 GLY GLY LEU LYS PRO ASN SER ASP ILE ASP LEU LEU VAL SEQRES 5 A 270 THR ILE CME GLN PRO LEU THR GLU ALA GLN ARG ALA THR SEQRES 6 A 270 LEU MET GLN GLU LEU LEU ALA LEU SER SER PRO PRO GLY SEQRES 7 A 270 ALA SER ALA GLU LYS ARG ALA LEU GLN VAL THR VAL VAL SEQRES 8 A 270 LEU TYR SER GLN LEU VAL PRO TRP CYS PHE PRO PRO SER SEQRES 9 A 270 ARG GLU MET GLN PHE GLY GLU TRP LEU ARG GLU ASP ILE SEQRES 10 A 270 CYS GLN GLY ILE TYR GLU PRO ALA GLN GLN ASP TRP ASP SEQRES 11 A 270 MET VAL LEU LEU ILE THR GLN ILE LEU GLU THR SER ILE SEQRES 12 A 270 PRO LEU LYS GLY GLU ARG ALA GLU ARG LEU PHE THR PRO SEQRES 13 A 270 ALA PRO ALA ALA GLN LEU LEU LYS ALA LEU ARG TYR PRO SEQRES 14 A 270 LEU ASP LEU TRP GLN SER THR ALA ASP VAL GLN GLY ASP SEQRES 15 A 270 GLU TYR HIS ILE VAL LEU THR LEU ALA ARG ILE TRP TYR SEQRES 16 A 270 THR LEU SER THR GLY ARG PHE THR SER LYS ASP ALA ALA SEQRES 17 A 270 ALA ASP TRP LEU LEU PRO GLN LEU PRO GLU ASP TYR ALA SEQRES 18 A 270 ALA THR LEU ARG ALA ALA GLN ARG GLU TYR LEU GLY LEU SEQRES 19 A 270 GLU GLN GLN ASP TRP HIS ILE LEU LEU PRO ALA VAL VAL SEQRES 20 A 270 ARG PHE VAL ASP PHE ALA LYS ALA HIS ILE PRO THR GLN SEQRES 21 A 270 PHE THR LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 270 MET THR LEU SER ILE PRO PRO SER ILE GLN CME GLN THR SEQRES 2 B 270 GLU ALA ALA CME ARG LEU ILE THR ARG VAL THR GLY ASP SEQRES 3 B 270 THR LEU ARG ALA ILE HIS LEU TYR GLY SER ALA VAL ALA SEQRES 4 B 270 GLY GLY LEU LYS PRO ASN SER ASP ILE ASP LEU LEU VAL SEQRES 5 B 270 THR ILE CME GLN PRO LEU THR GLU ALA GLN ARG ALA THR SEQRES 6 B 270 LEU MET GLN GLU LEU LEU ALA LEU SER SER PRO PRO GLY SEQRES 7 B 270 ALA SER ALA GLU LYS ARG ALA LEU GLN VAL THR VAL VAL SEQRES 8 B 270 LEU TYR SER GLN LEU VAL PRO TRP CYS PHE PRO PRO SER SEQRES 9 B 270 ARG GLU MET GLN PHE GLY GLU TRP LEU ARG GLU ASP ILE SEQRES 10 B 270 CYS GLN GLY ILE TYR GLU PRO ALA GLN GLN ASP TRP ASP SEQRES 11 B 270 MET VAL LEU LEU ILE THR GLN ILE LEU GLU THR SER ILE SEQRES 12 B 270 PRO LEU LYS GLY GLU ARG ALA GLU ARG LEU PHE THR PRO SEQRES 13 B 270 ALA PRO ALA ALA GLN LEU LEU LYS ALA LEU ARG TYR PRO SEQRES 14 B 270 LEU ASP LEU TRP GLN SER THR ALA ASP VAL GLN GLY ASP SEQRES 15 B 270 GLU TYR HIS ILE VAL LEU THR LEU ALA ARG ILE TRP TYR SEQRES 16 B 270 THR LEU SER THR GLY ARG PHE THR SER LYS ASP ALA ALA SEQRES 17 B 270 ALA ASP TRP LEU LEU PRO GLN LEU PRO GLU ASP TYR ALA SEQRES 18 B 270 ALA THR LEU ARG ALA ALA GLN ARG GLU TYR LEU GLY LEU SEQRES 19 B 270 GLU GLN GLN ASP TRP HIS ILE LEU LEU PRO ALA VAL VAL SEQRES 20 B 270 ARG PHE VAL ASP PHE ALA LYS ALA HIS ILE PRO THR GLN SEQRES 21 B 270 PHE THR LYS GLY HIS HIS HIS HIS HIS HIS MODRES 5LPA CME A 11 CYS MODIFIED RESIDUE MODRES 5LPA CME A 17 CYS MODIFIED RESIDUE MODRES 5LPA CME A 55 CYS MODIFIED RESIDUE MODRES 5LPA CME B 11 CYS MODIFIED RESIDUE MODRES 5LPA CME B 17 CYS MODIFIED RESIDUE MODRES 5LPA CME B 55 CYS MODIFIED RESIDUE HET CME A 11 10 HET CME A 17 10 HET CME A 55 10 HET CME B 11 10 HET CME B 17 10 HET CME B 55 10 HET ATP A 301 31 HET 71R A 302 41 HET CA A 303 1 HET CL A 304 1 HET CA A 305 1 HET EDO A 306 4 HET ATP B 301 31 HET 71R B 302 41 HET CA B 303 1 HET CL B 304 1 HET EDO B 305 4 HET CA B 306 1 HET EDO B 307 8 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM 71R DIHYDROSTREPTOMYCIN HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME 6(C5 H11 N O3 S2) FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 71R 2(C21 H41 N7 O12) FORMUL 5 CA 4(CA 2+) FORMUL 6 CL 2(CL 1-) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 16 HOH *697(H2 O) HELIX 1 AA1 PRO A 6 SER A 8 5 3 HELIX 2 AA2 ILE A 9 GLY A 25 1 17 HELIX 3 AA3 GLY A 35 GLY A 40 1 6 HELIX 4 AA4 THR A 59 SER A 74 1 16 HELIX 5 AA5 SER A 94 LEU A 96 5 3 HELIX 6 AA6 GLY A 110 TRP A 112 5 3 HELIX 7 AA7 LEU A 113 GLN A 119 1 7 HELIX 8 AA8 TRP A 129 THR A 141 1 13 HELIX 9 AA9 ARG A 149 PHE A 154 1 6 HELIX 10 AB1 PRO A 158 TRP A 173 1 16 HELIX 11 AB2 SER A 175 GLN A 180 1 6 HELIX 12 AB3 ASP A 182 GLY A 200 1 19 HELIX 13 AB4 SER A 204 LEU A 213 1 10 HELIX 14 AB5 PRO A 214 LEU A 216 5 3 HELIX 15 AB6 PRO A 217 LEU A 232 1 16 HELIX 16 AB7 ASP A 238 ILE A 257 1 20 HELIX 17 AB8 PRO B 6 SER B 8 5 3 HELIX 18 AB9 ILE B 9 GLY B 25 1 17 HELIX 19 AC1 GLY B 35 GLY B 40 1 6 HELIX 20 AC2 THR B 59 SER B 74 1 16 HELIX 21 AC3 SER B 94 LEU B 96 5 3 HELIX 22 AC4 GLY B 110 TRP B 112 5 3 HELIX 23 AC5 LEU B 113 CYS B 118 1 6 HELIX 24 AC6 TRP B 129 THR B 141 1 13 HELIX 25 AC7 ARG B 149 PHE B 154 1 6 HELIX 26 AC8 PRO B 158 TRP B 173 1 16 HELIX 27 AC9 SER B 175 GLN B 180 1 6 HELIX 28 AD1 ASP B 182 GLY B 200 1 19 HELIX 29 AD2 SER B 204 LEU B 213 1 10 HELIX 30 AD3 PRO B 214 LEU B 216 5 3 HELIX 31 AD4 PRO B 217 LEU B 232 1 16 HELIX 32 AD5 ASP B 238 ILE B 257 1 20 SHEET 1 AA1 5 MET A 107 PHE A 109 0 SHEET 2 AA1 5 LEU A 86 LEU A 92 -1 N VAL A 88 O PHE A 109 SHEET 3 AA1 5 ILE A 48 ILE A 54 1 N VAL A 52 O THR A 89 SHEET 4 AA1 5 LEU A 28 TYR A 34 -1 N ARG A 29 O THR A 53 SHEET 5 AA1 5 ILE A 143 LYS A 146 -1 O ILE A 143 N LEU A 33 SHEET 1 AA2 2 SER A 104 ARG A 105 0 SHEET 2 AA2 2 GLN A 126 GLN A 127 -1 O GLN A 126 N ARG A 105 SHEET 1 AA3 5 MET B 107 PHE B 109 0 SHEET 2 AA3 5 LEU B 86 LEU B 92 -1 N VAL B 88 O PHE B 109 SHEET 3 AA3 5 ILE B 48 ILE B 54 1 N VAL B 52 O THR B 89 SHEET 4 AA3 5 LEU B 28 TYR B 34 -1 N ARG B 29 O THR B 53 SHEET 5 AA3 5 ILE B 143 LYS B 146 -1 O ILE B 143 N LEU B 33 SHEET 1 AA4 2 SER B 104 ARG B 105 0 SHEET 2 AA4 2 GLN B 126 GLN B 127 -1 O GLN B 126 N ARG B 105 LINK C GLN A 10 N CME A 11 1555 1555 1.34 LINK C CME A 11 N GLN A 12 1555 1555 1.34 LINK C ALA A 16 N CME A 17 1555 1555 1.34 LINK C CME A 17 N AARG A 18 1555 1555 1.33 LINK C CME A 17 N BARG A 18 1555 1555 1.33 LINK C ILE A 54 N CME A 55 1555 1555 1.33 LINK C CME A 55 N GLN A 56 1555 1555 1.32 LINK C GLN B 10 N CME B 11 1555 1555 1.33 LINK C CME B 11 N GLN B 12 1555 1555 1.33 LINK C ALA B 16 N CME B 17 1555 1555 1.34 LINK C CME B 17 N AARG B 18 1555 1555 1.33 LINK C CME B 17 N BARG B 18 1555 1555 1.34 LINK C ILE B 54 N CME B 55 1555 1555 1.33 LINK C CME B 55 N GLN B 56 1555 1555 1.33 LINK OD1 ASP A 47 CA CA A 303 1555 1555 2.25 LINK OD2 ASP A 47 CA B CA A 305 1555 1555 2.65 LINK OD1 ASP A 49 CA CA A 303 1555 1555 2.73 LINK OD2 ASP A 49 CA CA A 303 1555 1555 2.37 LINK OD1 ASP A 49 CA B CA A 305 1555 1555 2.60 LINK OE1BGLN A 87 CA B CA A 305 1555 1555 2.37 LINK O2G ATP A 301 CA CA A 303 1555 1555 2.36 LINK O2B ATP A 301 CA CA A 303 1555 1555 2.40 LINK O2A ATP A 301 CA CA A 303 1555 1555 2.37 LINK O2A ATP A 301 CA B CA A 305 1555 1555 2.49 LINK CA CA A 303 O HOH A 454 1555 1555 2.36 LINK CA B CA A 305 O HOH A 411 1555 1555 2.46 LINK OD1 ASP B 47 CA CA B 303 1555 1555 2.23 LINK OD2 ASP B 47 CA B CA B 306 1555 1555 2.65 LINK OD1 ASP B 49 CA CA B 303 1555 1555 2.72 LINK OD2 ASP B 49 CA CA B 303 1555 1555 2.39 LINK OD1 ASP B 49 CA B CA B 306 1555 1555 2.63 LINK OE1BGLN B 87 CA B CA B 306 1555 1555 2.37 LINK O2G ATP B 301 CA CA B 303 1555 1555 2.39 LINK O1B ATP B 301 CA CA B 303 1555 1555 2.39 LINK O1A ATP B 301 CA CA B 303 1555 1555 2.39 LINK O1A ATP B 301 CA B CA B 306 1555 1555 2.48 LINK CA CA B 303 O HOH B 468 1555 1555 2.34 LINK CA B CA B 306 O HOH B 416 1555 1555 2.44 CISPEP 1 THR A 2 LEU A 3 0 12.85 CISPEP 2 VAL A 97 PRO A 98 0 -4.90 CISPEP 3 PHE A 101 PRO A 102 0 -9.62 CISPEP 4 THR B 2 LEU B 3 0 6.97 CISPEP 5 VAL B 97 PRO B 98 0 -8.39 CISPEP 6 PHE B 101 PRO B 102 0 -9.99 SITE 1 AC1 28 SER A 36 GLY A 41 SER A 46 ASP A 47 SITE 2 AC1 28 ASP A 49 ASP A 130 LEU A 133 GLN A 137 SITE 3 AC1 28 LEU A 166 HIS A 185 ARG A 192 ILE A 193 SITE 4 AC1 28 THR A 196 PHE A 202 LYS A 205 TYR A 231 SITE 5 AC1 28 71R A 302 CA A 303 CA A 305 HOH A 411 SITE 6 AC1 28 HOH A 468 HOH A 528 HOH A 547 HOH A 560 SITE 7 AC1 28 HOH A 569 HOH A 574 HOH A 582 HOH A 594 SITE 1 AC2 18 GLN A 87 TRP A 112 TRP A 173 ALA A 177 SITE 2 AC2 18 ASP A 178 ASP A 182 HIS A 185 ATP A 301 SITE 3 AC2 18 HOH A 411 HOH A 413 HOH A 431 HOH A 439 SITE 4 AC2 18 HOH A 448 HOH A 472 HOH A 508 HOH A 517 SITE 5 AC2 18 HOH A 524 HOH A 571 SITE 1 AC3 5 ASP A 47 ASP A 49 ATP A 301 CA A 305 SITE 2 AC3 5 HOH A 454 SITE 1 AC4 3 GLY A 41 LEU A 42 PHE A 252 SITE 1 AC5 7 ASP A 47 ASP A 49 GLN A 87 ATP A 301 SITE 2 AC5 7 CA A 303 HOH A 411 HOH A 583 SITE 1 AC6 7 LEU A 3 GLU A 140 THR A 141 PRO A 214 SITE 2 AC6 7 LEU A 216 PRO A 217 HOH A 603 SITE 1 AC7 28 SER B 36 GLY B 41 SER B 46 ASP B 47 SITE 2 AC7 28 ASP B 49 ASP B 130 LEU B 133 GLN B 137 SITE 3 AC7 28 LEU B 166 HIS B 185 ARG B 192 ILE B 193 SITE 4 AC7 28 THR B 196 PHE B 202 LYS B 205 TYR B 231 SITE 5 AC7 28 71R B 302 CA B 303 CA B 306 HOH B 416 SITE 6 AC7 28 HOH B 455 HOH B 524 HOH B 539 HOH B 549 SITE 7 AC7 28 HOH B 570 HOH B 591 HOH B 593 HOH B 605 SITE 1 AC8 19 GLN B 87 GLN B 108 TRP B 112 TRP B 173 SITE 2 AC8 19 ALA B 177 ASP B 178 ASP B 182 HIS B 185 SITE 3 AC8 19 ATP B 301 HOH B 416 HOH B 418 HOH B 446 SITE 4 AC8 19 HOH B 464 HOH B 472 HOH B 474 HOH B 528 SITE 5 AC8 19 HOH B 535 HOH B 586 HOH B 593 SITE 1 AC9 5 ASP B 47 ASP B 49 ATP B 301 CA B 306 SITE 2 AC9 5 HOH B 468 SITE 1 AD1 3 GLY B 41 LEU B 42 PHE B 252 SITE 1 AD2 7 GLU B 140 THR B 141 PRO B 214 LEU B 216 SITE 2 AD2 7 PRO B 217 HOH B 417 HOH B 508 SITE 1 AD3 7 ASP B 47 ASP B 49 GLN B 87 ATP B 301 SITE 2 AD3 7 CA B 303 HOH B 416 HOH B 571 SITE 1 AD4 10 SER A 8 GLU A 82 HOH A 455 HOH A 461 SITE 2 AD4 10 SER B 8 GLU B 82 HOH B 414 HOH B 421 SITE 3 AD4 10 HOH B 425 HOH B 459 CRYST1 82.885 82.885 79.782 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012065 0.006966 0.000000 0.00000 SCALE2 0.000000 0.013931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012534 0.00000