HEADER TRANSPORT PROTEIN 15-AUG-16 5LQ1 TITLE 1.41 A RESOLUTION STRUCTURE OF PTXB FROM TRICHODESMIUM ERYTHRAEUM TITLE 2 IMS101 IN COMPLEX WITH METHYLPHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHONATE ABC TRANSPORTER, PERIPLASMIC PHOSPHONATE- COMPND 3 BINDING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CONSTRUCT IS TRUNCATED BY 26 RESIDUES AT THE N- COMPND 7 TERMIUS TO REMOVE A SIGNAL PEPTIDE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODESMIUM ERYTHRAEUM IMS101; SOURCE 3 ORGANISM_TAXID: 203124; SOURCE 4 GENE: TERY_0366; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A(+) KEYWDS ABC TRANSPORTER, PHOSPHITE, METHYLPHOSPHONATE, PERIPLASMIC BINDING KEYWDS 2 PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BISSON,N.B.P.ADAMS,D.POLYVIOU,T.S.BIBBY,C.N.HUNTER,A.HITCHCOCK REVDAT 2 10-JAN-24 5LQ1 1 LINK REVDAT 1 06-DEC-17 5LQ1 0 JRNL AUTH C.BISSON,N.B.P.ADAMS,B.STEVENSON,A.A.BRINDLEY,D.POLYVIOU, JRNL AUTH 2 T.S.BIBBY,P.J.BAKER,C.N.HUNTER,A.HITCHCOCK JRNL TITL THE MOLECULAR BASIS OF PHOSPHITE AND HYPOPHOSPHITE JRNL TITL 2 RECOGNITION BY ABC-TRANSPORTERS. JRNL REF NAT COMMUN V. 8 1746 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29170493 JRNL DOI 10.1038/S41467-017-01226-8 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 86075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : -0.18000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4092 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4025 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5532 ; 1.514 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9313 ; 1.109 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;39.506 ;26.534 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;12.980 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4591 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 833 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 3.891 ; 1.887 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2061 ; 3.891 ; 1.884 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ; 4.088 ; 2.810 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2575 ; 4.089 ; 2.812 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 9.544 ; 2.623 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2030 ; 9.544 ; 2.623 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2959 ; 8.096 ; 3.537 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4642 ; 6.458 ;24.331 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4643 ; 6.458 ;24.333 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8117 ; 8.723 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;20.522 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8199 ;31.373 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97629 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 65.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JVB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE PH 5.0 AND 20 % (W/V) PEG 6000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ASN A 8 REMARK 465 GLN A 269 REMARK 465 LEU A 270 REMARK 465 ASN A 271 REMARK 465 LYS A 272 REMARK 465 LEU A 273 REMARK 465 GLU A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ASN B 8 REMARK 465 LEU B 265 REMARK 465 ASN B 266 REMARK 465 PHE B 267 REMARK 465 GLU B 268 REMARK 465 GLN B 269 REMARK 465 LEU B 270 REMARK 465 ASN B 271 REMARK 465 LYS B 272 REMARK 465 LEU B 273 REMARK 465 GLU B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 18.11 -140.14 REMARK 500 PHE A 89 -18.55 -142.68 REMARK 500 HIS A 134 -73.11 -145.55 REMARK 500 LYS B 83 14.81 -141.17 REMARK 500 PHE B 89 -15.10 -140.46 REMARK 500 HIS B 134 -73.31 -146.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 GLU A 40 OE2 107.9 REMARK 620 3 ILE A 47 O 92.6 107.5 REMARK 620 4 HOH A 447 O 92.9 77.5 171.0 REMARK 620 5 HOH A 469 O 166.1 84.6 89.2 83.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 53 O REMARK 620 2 HOH A 456 O 85.2 REMARK 620 3 HOH A 465 O 86.7 93.3 REMARK 620 4 HOH A 470 O 88.4 95.9 169.1 REMARK 620 5 HOH A 478 O 87.3 172.5 86.9 83.2 REMARK 620 6 HOH A 517 O 175.8 95.7 97.4 87.4 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 410 O REMARK 620 2 HOH A 429 O 88.2 REMARK 620 3 HOH A 516 O 90.3 94.7 REMARK 620 4 THR B 53 O 92.5 84.1 176.9 REMARK 620 5 HOH B 463 O 175.9 87.8 89.5 87.7 REMARK 620 6 HOH B 472 O 88.9 175.3 89.0 92.4 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 36 OE2 REMARK 620 2 GLU B 40 OE2 99.3 REMARK 620 3 ILE B 47 O 92.3 108.1 REMARK 620 4 HOH B 401 O 98.1 71.0 169.5 REMARK 620 5 HOH B 445 O 92.9 159.0 88.3 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GB A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GB B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JVB RELATED DB: PDB REMARK 900 COMPLEX WITH PHOSPHITE DBREF 5LQ1 A 2 272 UNP Q119I9 Q119I9_TRIEI 28 298 DBREF 5LQ1 B 2 272 UNP Q119I9 Q119I9_TRIEI 28 298 SEQADV 5LQ1 MET A 1 UNP Q119I9 INITIATING METHIONINE SEQADV 5LQ1 LEU A 273 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 GLU A 274 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 275 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 276 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 277 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 278 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 279 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS A 280 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 MET B 1 UNP Q119I9 INITIATING METHIONINE SEQADV 5LQ1 LEU B 273 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 GLU B 274 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 275 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 276 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 277 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 278 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 279 UNP Q119I9 EXPRESSION TAG SEQADV 5LQ1 HIS B 280 UNP Q119I9 EXPRESSION TAG SEQRES 1 A 280 MET ASN ILE GLN LYS SER GLU ASN LYS ALA ASN PRO GLN SEQRES 2 A 280 LYS LEU VAL VAL ALA LEU LEU PRO ASP GLU SER ALA ALA SEQRES 3 A 280 THR VAL ILE GLN ASN ASN LYS GLY LEU GLU MET TYR LEU SEQRES 4 A 280 GLU ASN LYS LEU ASN LYS ASP ILE GLU LEU PHE VAL SER SEQRES 5 A 280 THR ASP TYR SER SER MET ILE GLU VAL ALA SER LYS GLY SEQRES 6 A 280 ARG LEU ASP LEU ALA TYR PHE GLY PRO LEU SER TYR VAL SEQRES 7 A 280 LEU ALA LYS THR LYS SER ASN ILE GLU PRO PHE ALA ALA SEQRES 8 A 280 LEU GLU LYS ASP GLY LYS ASN THR TYR GLN ALA LEU VAL SEQRES 9 A 280 ILE GLY ASN ALA GLU ALA GLY ILE ASN SER TYR GLU LYS SEQRES 10 A 280 ILE GLU GLY LYS ILE MET ALA TYR GLY ASP GLN ALA SER SEQRES 11 A 280 THR SER SER HIS LEU ILE PRO LYS SER MET LEU LYS GLN SEQRES 12 A 280 LYS GLN LEU LYS ALA GLY GLU ASN TYR GLU GLU VAL PHE SEQRES 13 A 280 VAL GLY ALA HIS ASP ALA VAL ALA ILE ALA VAL ALA ASN SEQRES 14 A 280 GLY LYS ALA GLN ALA GLY GLY LEU SER LYS PRO ILE PHE SEQRES 15 A 280 THR ALA LEU ILE GLU ARG GLY THR ILE ASP LYS ASN LYS SEQRES 16 A 280 VAL ILE ILE ILE ALA GLU SER LYS PRO PHE PRO GLN TYR SEQRES 17 A 280 PRO TRP THR MET ARG SER ASP LEU ASP SER GLU LEU LYS SEQRES 18 A 280 THR GLN ILE GLN GLN ALA PHE LEU GLU LEU GLU ASP LYS SEQRES 19 A 280 ALA ILE LEU LYS PRO PHE LYS ALA ASP ALA PHE THR LEU SEQRES 20 A 280 VAL THR ASP GLN ASP TYR ASP VAL VAL ARG ASN LEU GLY SEQRES 21 A 280 GLU VAL LEU GLU LEU ASN PHE GLU GLN LEU ASN LYS LEU SEQRES 22 A 280 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 280 MET ASN ILE GLN LYS SER GLU ASN LYS ALA ASN PRO GLN SEQRES 2 B 280 LYS LEU VAL VAL ALA LEU LEU PRO ASP GLU SER ALA ALA SEQRES 3 B 280 THR VAL ILE GLN ASN ASN LYS GLY LEU GLU MET TYR LEU SEQRES 4 B 280 GLU ASN LYS LEU ASN LYS ASP ILE GLU LEU PHE VAL SER SEQRES 5 B 280 THR ASP TYR SER SER MET ILE GLU VAL ALA SER LYS GLY SEQRES 6 B 280 ARG LEU ASP LEU ALA TYR PHE GLY PRO LEU SER TYR VAL SEQRES 7 B 280 LEU ALA LYS THR LYS SER ASN ILE GLU PRO PHE ALA ALA SEQRES 8 B 280 LEU GLU LYS ASP GLY LYS ASN THR TYR GLN ALA LEU VAL SEQRES 9 B 280 ILE GLY ASN ALA GLU ALA GLY ILE ASN SER TYR GLU LYS SEQRES 10 B 280 ILE GLU GLY LYS ILE MET ALA TYR GLY ASP GLN ALA SER SEQRES 11 B 280 THR SER SER HIS LEU ILE PRO LYS SER MET LEU LYS GLN SEQRES 12 B 280 LYS GLN LEU LYS ALA GLY GLU ASN TYR GLU GLU VAL PHE SEQRES 13 B 280 VAL GLY ALA HIS ASP ALA VAL ALA ILE ALA VAL ALA ASN SEQRES 14 B 280 GLY LYS ALA GLN ALA GLY GLY LEU SER LYS PRO ILE PHE SEQRES 15 B 280 THR ALA LEU ILE GLU ARG GLY THR ILE ASP LYS ASN LYS SEQRES 16 B 280 VAL ILE ILE ILE ALA GLU SER LYS PRO PHE PRO GLN TYR SEQRES 17 B 280 PRO TRP THR MET ARG SER ASP LEU ASP SER GLU LEU LYS SEQRES 18 B 280 THR GLN ILE GLN GLN ALA PHE LEU GLU LEU GLU ASP LYS SEQRES 19 B 280 ALA ILE LEU LYS PRO PHE LYS ALA ASP ALA PHE THR LEU SEQRES 20 B 280 VAL THR ASP GLN ASP TYR ASP VAL VAL ARG ASN LEU GLY SEQRES 21 B 280 GLU VAL LEU GLU LEU ASN PHE GLU GLN LEU ASN LYS LEU SEQRES 22 B 280 GLU HIS HIS HIS HIS HIS HIS HET MG A 301 1 HET MG A 302 1 HET GB A 303 5 HET EDO A 304 4 HET MG B 301 1 HET MG B 302 1 HET GB B 303 5 HETNAM MG MAGNESIUM ION HETNAM GB METHYLPHOSPHONIC ACID ESTER GROUP HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 4(MG 2+) FORMUL 5 GB 2(C H5 O3 P) FORMUL 6 EDO C2 H6 O2 FORMUL 10 HOH *213(H2 O) HELIX 1 AA1 SER A 24 ASN A 44 1 21 HELIX 2 AA2 ASP A 54 LYS A 64 1 11 HELIX 3 AA3 GLY A 73 THR A 82 1 10 HELIX 4 AA4 TYR A 115 GLU A 119 5 5 HELIX 5 AA5 HIS A 134 LYS A 144 1 11 HELIX 6 AA6 ALA A 159 ASN A 169 1 11 HELIX 7 AA7 LYS A 179 ARG A 188 1 10 HELIX 8 AA8 ASP A 192 ASN A 194 5 3 HELIX 9 AA9 ASP A 217 LEU A 231 1 15 HELIX 10 AB1 LEU A 237 LYS A 241 5 5 HELIX 11 AB2 THR A 249 ASP A 252 5 4 HELIX 12 AB3 TYR A 253 LEU A 263 1 11 HELIX 13 AB4 SER B 24 ASN B 44 1 21 HELIX 14 AB5 ASP B 54 LYS B 64 1 11 HELIX 15 AB6 GLY B 73 THR B 82 1 10 HELIX 16 AB7 TYR B 115 GLU B 119 5 5 HELIX 17 AB8 HIS B 134 LYS B 144 1 11 HELIX 18 AB9 ALA B 159 ASN B 169 1 11 HELIX 19 AC1 LYS B 179 ARG B 188 1 10 HELIX 20 AC2 ASP B 192 ASN B 194 5 3 HELIX 21 AC3 ASP B 217 LEU B 231 1 15 HELIX 22 AC4 ASP B 233 LYS B 238 1 6 HELIX 23 AC5 PRO B 239 LYS B 241 5 3 HELIX 24 AC6 THR B 249 ASP B 252 5 4 HELIX 25 AC7 TYR B 253 GLU B 264 1 12 SHEET 1 AA1 6 ASP A 46 PHE A 50 0 SHEET 2 AA1 6 LYS A 14 LEU A 19 1 N LEU A 15 O ASP A 46 SHEET 3 AA1 6 LEU A 69 TYR A 71 1 O TYR A 71 N ALA A 18 SHEET 4 AA1 6 TRP A 210 ARG A 213 -1 O THR A 211 N ALA A 70 SHEET 5 AA1 6 ILE A 86 GLU A 93 -1 N ALA A 90 O TRP A 210 SHEET 6 AA1 6 ALA A 244 THR A 246 -1 O ALA A 244 N GLU A 93 SHEET 1 AA2 2 THR A 99 TYR A 100 0 SHEET 2 AA2 2 PHE A 205 PRO A 206 -1 O PHE A 205 N TYR A 100 SHEET 1 AA3 5 GLU A 153 PHE A 156 0 SHEET 2 AA3 5 ILE A 122 TYR A 125 1 N MET A 123 O GLU A 153 SHEET 3 AA3 5 ALA A 174 SER A 178 1 O ALA A 174 N ALA A 124 SHEET 4 AA3 5 ALA A 102 ASN A 107 -1 N LEU A 103 O LEU A 177 SHEET 5 AA3 5 VAL A 196 GLU A 201 -1 O ILE A 199 N VAL A 104 SHEET 1 AA4 6 ASP B 46 VAL B 51 0 SHEET 2 AA4 6 LYS B 14 LEU B 19 1 N LEU B 15 O ASP B 46 SHEET 3 AA4 6 LEU B 69 TYR B 71 1 O TYR B 71 N ALA B 18 SHEET 4 AA4 6 TRP B 210 ARG B 213 -1 O THR B 211 N ALA B 70 SHEET 5 AA4 6 ILE B 86 GLU B 93 -1 N ALA B 90 O TRP B 210 SHEET 6 AA4 6 ALA B 244 THR B 246 -1 O ALA B 244 N GLU B 93 SHEET 1 AA5 2 THR B 99 TYR B 100 0 SHEET 2 AA5 2 PHE B 205 PRO B 206 -1 O PHE B 205 N TYR B 100 SHEET 1 AA6 5 GLU B 153 PHE B 156 0 SHEET 2 AA6 5 ILE B 122 TYR B 125 1 N TYR B 125 O VAL B 155 SHEET 3 AA6 5 ALA B 174 SER B 178 1 O ALA B 174 N ALA B 124 SHEET 4 AA6 5 ALA B 102 ASN B 107 -1 N LEU B 103 O LEU B 177 SHEET 5 AA6 5 VAL B 196 GLU B 201 -1 O ILE B 197 N GLY B 106 LINK OE2 GLU A 36 MG MG A 302 1555 1555 2.38 LINK OE2 GLU A 40 MG MG A 302 1555 1555 2.16 LINK O ILE A 47 MG MG A 302 1555 1555 2.01 LINK O THR A 53 MG MG A 301 1555 1555 2.12 LINK MG MG A 301 O HOH A 456 1555 1555 2.06 LINK MG MG A 301 O HOH A 465 1555 1555 2.06 LINK MG MG A 301 O HOH A 470 1555 1555 2.02 LINK MG MG A 301 O HOH A 478 1555 1555 2.13 LINK MG MG A 301 O HOH A 517 1555 1555 2.12 LINK MG MG A 302 O HOH A 447 1555 1555 2.31 LINK MG MG A 302 O HOH A 469 1555 1555 2.13 LINK O HOH A 410 MG MG B 301 1555 1555 2.03 LINK O HOH A 429 MG MG B 301 1555 1555 2.13 LINK O HOH A 516 MG MG B 301 1555 1555 2.02 LINK OE2 GLU B 36 MG MG B 302 1555 1555 2.12 LINK OE2 GLU B 40 MG MG B 302 1555 1555 2.23 LINK O ILE B 47 MG MG B 302 1555 1555 1.80 LINK O THR B 53 MG MG B 301 1555 1555 2.12 LINK MG MG B 301 O HOH B 463 1555 1555 2.14 LINK MG MG B 301 O HOH B 472 1555 1555 2.09 LINK MG MG B 302 O HOH B 401 1555 1555 1.92 LINK MG MG B 302 O HOH B 445 1555 1555 2.24 SITE 1 AC1 6 THR A 53 HOH A 456 HOH A 465 HOH A 470 SITE 2 AC1 6 HOH A 478 HOH A 517 SITE 1 AC2 5 GLU A 36 GLU A 40 ILE A 47 HOH A 447 SITE 2 AC2 5 HOH A 469 SITE 1 AC3 10 LEU A 20 TYR A 55 GLY A 73 TYR A 100 SITE 2 AC3 10 SER A 130 THR A 131 SER A 132 HIS A 160 SITE 3 AC3 10 TYR A 208 HOH A 418 SITE 1 AC4 5 ALA A 62 GLY A 65 ARG A 66 LEU A 67 SITE 2 AC4 5 ILE A 86 SITE 1 AC5 6 HOH A 410 HOH A 429 HOH A 516 THR B 53 SITE 2 AC5 6 HOH B 463 HOH B 472 SITE 1 AC6 5 GLU B 36 GLU B 40 ILE B 47 HOH B 401 SITE 2 AC6 5 HOH B 445 SITE 1 AC7 10 LEU B 20 TYR B 55 GLY B 73 TYR B 100 SITE 2 AC7 10 SER B 130 THR B 131 SER B 132 HIS B 160 SITE 3 AC7 10 TYR B 208 HOH B 411 CRYST1 39.481 53.703 66.388 84.82 78.26 69.74 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025329 -0.009347 -0.005065 0.00000 SCALE2 0.000000 0.019848 -0.000428 0.00000 SCALE3 0.000000 0.000000 0.015389 0.00000