data_5LQV # _entry.id 5LQV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LQV WWPDB D_1200001218 BMRB 34036 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid LPPG' _pdbx_database_related.db_id 34036 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LQV _pdbx_database_status.recvd_initial_deposition_date 2016-08-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mineev, K.S.' 1 ? 'Shenkarev, Z.O.' 2 ? 'Arseniev, A.S.' 3 ? 'Melnikova, D.N.' 4 ? 'Finkina, E.I.' 5 ? 'Ovchinnikova, T.V.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 1785 _citation.page_last 1796 _citation.title 'Ligand Binding Properties of the Lentil Lipid Transfer Protein: Molecular Insight into the Possible Mechanism of Lipid Uptake.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.6b01079 _citation.pdbx_database_id_PubMed 28266846 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shenkarev, Z.O.' 1 ? primary 'Melnikova, D.N.' 2 ? primary 'Finkina, E.I.' 3 ? primary 'Sukhanov, S.V.' 4 ? primary 'Boldyrev, I.A.' 5 ? primary 'Gizatullina, A.K.' 6 ? primary 'Mineev, K.S.' 7 ? primary 'Arseniev, A.S.' 8 ? primary 'Ovchinnikova, T.V.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-specific lipid-transfer protein 2' 9299.694 1 ? ? ? ? 2 non-polymer syn '1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]' 483.553 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LTP2 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY KISTTTNCNTVKF ; _entity_poly.pdbx_seq_one_letter_code_can ;AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY KISTTTNCNTVKF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 SER n 1 4 CYS n 1 5 GLY n 1 6 ALA n 1 7 VAL n 1 8 THR n 1 9 SER n 1 10 ASP n 1 11 LEU n 1 12 SER n 1 13 PRO n 1 14 CYS n 1 15 LEU n 1 16 THR n 1 17 TYR n 1 18 LEU n 1 19 THR n 1 20 GLY n 1 21 GLY n 1 22 PRO n 1 23 GLY n 1 24 PRO n 1 25 SER n 1 26 PRO n 1 27 GLN n 1 28 CYS n 1 29 CYS n 1 30 GLY n 1 31 GLY n 1 32 VAL n 1 33 LYS n 1 34 LYS n 1 35 LEU n 1 36 LEU n 1 37 ALA n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 THR n 1 42 THR n 1 43 PRO n 1 44 ASP n 1 45 ARG n 1 46 GLN n 1 47 ALA n 1 48 ALA n 1 49 CYS n 1 50 ASN n 1 51 CYS n 1 52 LEU n 1 53 LYS n 1 54 SER n 1 55 ALA n 1 56 ALA n 1 57 GLY n 1 58 SER n 1 59 ILE n 1 60 THR n 1 61 LYS n 1 62 LEU n 1 63 ASN n 1 64 THR n 1 65 ASN n 1 66 ASN n 1 67 ALA n 1 68 ALA n 1 69 ALA n 1 70 LEU n 1 71 PRO n 1 72 GLY n 1 73 LYS n 1 74 CYS n 1 75 GLY n 1 76 VAL n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 TYR n 1 81 LYS n 1 82 ILE n 1 83 SER n 1 84 THR n 1 85 THR n 1 86 THR n 1 87 ASN n 1 88 CYS n 1 89 ASN n 1 90 THR n 1 91 VAL n 1 92 LYS n 1 93 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 93 _entity_src_gen.gene_src_common_name Lentil _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lens culinaris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3864 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NLTP2_LENCU _struct_ref.pdbx_db_accession A0AT29 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY KISTTTNCNTVKF ; _struct_ref.pdbx_align_begin 26 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LQV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0AT29 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 93 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PGM non-polymer . '1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]' LYSOPHOSPHATIDYLGLYCEROL 'C22 H44 O9 P -1' 483.553 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 2 1 1 '3D HCCH-TOCSY' 1 isotropic 3 1 1 '3D HNCACB' 1 isotropic 4 1 1 '3D 1H-15N NOESY' 1 isotropic 5 1 1 '13C-filtered NOESY-HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.3 mM [U-99% 13C; U-99% 15N] LTP2, 2 mM LPPG, 20 mM sodium acetate, 0.01 % sodium azide, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AvanceIII _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5LQV _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 5LQV _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5LQV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 2 'structure calculation' CYANA 3.0 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' CARA 1.9.1 'Keller and Wuthrich' 4 processing TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LQV _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LQV _struct.title 'Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid LPPG' _struct.pdbx_descriptor 'Non-specific lipid-transfer protein 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LQV _struct_keywords.text ;plant defense peptide lipid transfer protein lens culinaris complex with lipid, STRUCTURE FROM CYANA 3.0, lipid transfer, LIPID TRANSPORT ; _struct_keywords.pdbx_keywords 'LIPID TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 3 ? ASP A 10 ? SER A 3 ASP A 10 1 ? 8 HELX_P HELX_P2 AA2 PRO A 13 ? THR A 19 ? PRO A 13 THR A 19 1 ? 7 HELX_P HELX_P3 AA3 SER A 25 ? ALA A 39 ? SER A 25 ALA A 39 1 ? 15 HELX_P HELX_P4 AA4 THR A 41 ? SER A 58 ? THR A 41 SER A 58 1 ? 18 HELX_P HELX_P5 AA5 ASN A 63 ? CYS A 74 ? ASN A 63 CYS A 74 1 ? 12 HELX_P HELX_P6 AA6 ASN A 87 ? VAL A 91 ? ASN A 87 VAL A 91 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 4 A CYS 51 1_555 ? ? ? ? ? ? ? 2.012 ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 14 A CYS 28 1_555 ? ? ? ? ? ? ? 2.101 ? disulf3 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 74 SG ? ? A CYS 29 A CYS 74 1_555 ? ? ? ? ? ? ? 1.989 ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 49 A CYS 88 1_555 ? ? ? ? ? ? ? 1.982 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 1 0.06 2 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 2 0.03 3 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 3 0.02 4 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 4 0.07 5 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 5 0.05 6 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 6 0.09 7 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 7 0.08 8 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 8 0.11 9 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 9 0.10 10 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 10 0.07 11 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 11 0.07 12 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 12 0.04 13 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 13 0.03 14 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 14 0.02 15 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 15 0.02 16 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 16 0.10 17 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 17 0.10 18 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 18 0.03 19 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 19 0.01 20 GLY 23 A . ? GLY 23 A PRO 24 A ? PRO 24 A 20 0.03 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PGM _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue PGM A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 THR A 8 ? THR A 8 . ? 1_555 ? 2 AC1 10 LEU A 15 ? LEU A 15 . ? 1_555 ? 3 AC1 10 LEU A 35 ? LEU A 35 . ? 1_555 ? 4 AC1 10 LEU A 36 ? LEU A 36 . ? 1_555 ? 5 AC1 10 LEU A 52 ? LEU A 52 . ? 1_555 ? 6 AC1 10 LYS A 53 ? LYS A 53 . ? 1_555 ? 7 AC1 10 ALA A 55 ? ALA A 55 . ? 1_555 ? 8 AC1 10 ALA A 56 ? ALA A 56 . ? 1_555 ? 9 AC1 10 ALA A 67 ? ALA A 67 . ? 1_555 ? 10 AC1 10 ILE A 82 ? ILE A 82 . ? 1_555 ? # _atom_sites.entry_id 5LQV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'PGM A 101 HAS WRONG CHIRALITY AT ATOM C2' 2 'PGM A 101 HAS WRONG CHIRALITY AT ATOM C8' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 PHE 93 93 93 PHE PHE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PGM _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 103 _pdbx_nonpoly_scheme.pdb_mon_id PGM _pdbx_nonpoly_scheme.auth_mon_id PPG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -11 ? 1 'SSA (A^2)' 5470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-28 2 'Structure model' 1 1 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_nmr_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 LTP2 0.3 ? mM '[U-99% 13C; U-99% 15N]' 1 LPPG 2 ? mM 'natural abundance' 1 'sodium acetate' 20 ? mM 'natural abundance' 1 'sodium azide' 0.01 ? % 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 78 ? ? -154.63 87.62 2 1 ILE A 82 ? ? 59.82 100.97 3 2 SER A 83 ? ? -167.61 118.81 4 3 ILE A 82 ? ? 59.66 98.91 5 4 THR A 19 ? ? -94.84 31.60 6 5 THR A 41 ? ? -106.81 -75.64 7 5 THR A 42 ? ? 178.67 -56.59 8 5 ILE A 82 ? ? 58.13 97.45 9 6 LYS A 81 ? ? -64.81 98.55 10 6 ILE A 82 ? ? -51.31 103.41 11 7 ILE A 78 ? ? -150.66 85.41 12 7 ILE A 82 ? ? 59.83 100.22 13 8 ILE A 2 ? ? -66.48 -175.82 14 8 ILE A 82 ? ? -50.87 103.32 15 10 ILE A 82 ? ? 54.28 91.55 16 10 THR A 90 ? ? -95.72 40.29 17 11 ILE A 78 ? ? -150.10 84.23 18 11 ILE A 82 ? ? 59.75 99.64 19 13 THR A 90 ? ? -101.27 42.06 20 15 THR A 41 ? ? -101.67 -76.76 21 15 THR A 42 ? ? 179.04 -57.58 22 16 THR A 41 ? ? -107.44 -76.22 23 16 THR A 42 ? ? 179.23 -56.73 24 16 SER A 83 ? ? -44.36 106.34 25 17 SER A 83 ? ? -162.25 117.09 26 18 PRO A 79 ? ? -69.78 74.10 27 18 LYS A 92 ? ? -160.64 102.70 28 19 ILE A 82 ? ? 56.76 97.33 29 20 THR A 90 ? ? -105.45 40.34 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C2 ? A PGM 101 ? 'WRONG HAND' . 2 1 C8 ? A PGM 101 ? 'WRONG HAND' . 3 2 C2 ? A PGM 101 ? 'WRONG HAND' . 4 2 C8 ? A PGM 101 ? 'WRONG HAND' . 5 3 C2 ? A PGM 101 ? 'WRONG HAND' . 6 3 C8 ? A PGM 101 ? 'WRONG HAND' . 7 4 C2 ? A PGM 101 ? 'WRONG HAND' . 8 4 C8 ? A PGM 101 ? 'WRONG HAND' . 9 5 C2 ? A PGM 101 ? 'WRONG HAND' . 10 5 C8 ? A PGM 101 ? 'WRONG HAND' . 11 6 C2 ? A PGM 101 ? 'WRONG HAND' . 12 6 C8 ? A PGM 101 ? 'WRONG HAND' . 13 7 C2 ? A PGM 101 ? 'WRONG HAND' . 14 7 C8 ? A PGM 101 ? 'WRONG HAND' . 15 8 C2 ? A PGM 101 ? 'WRONG HAND' . 16 8 C8 ? A PGM 101 ? 'WRONG HAND' . 17 9 C2 ? A PGM 101 ? 'WRONG HAND' . 18 9 C8 ? A PGM 101 ? 'WRONG HAND' . 19 10 C2 ? A PGM 101 ? 'WRONG HAND' . 20 10 C8 ? A PGM 101 ? 'WRONG HAND' . 21 11 C2 ? A PGM 101 ? 'WRONG HAND' . 22 11 C8 ? A PGM 101 ? 'WRONG HAND' . 23 12 C2 ? A PGM 101 ? 'WRONG HAND' . 24 12 C8 ? A PGM 101 ? 'WRONG HAND' . 25 13 C2 ? A PGM 101 ? 'WRONG HAND' . 26 13 C8 ? A PGM 101 ? 'WRONG HAND' . 27 14 C2 ? A PGM 101 ? 'WRONG HAND' . 28 14 C8 ? A PGM 101 ? 'WRONG HAND' . 29 15 C2 ? A PGM 101 ? 'WRONG HAND' . 30 15 C8 ? A PGM 101 ? 'WRONG HAND' . 31 16 C2 ? A PGM 101 ? 'WRONG HAND' . 32 16 C8 ? A PGM 101 ? 'WRONG HAND' . 33 17 C2 ? A PGM 101 ? 'WRONG HAND' . 34 17 C8 ? A PGM 101 ? 'WRONG HAND' . 35 18 C2 ? A PGM 101 ? 'WRONG HAND' . 36 18 C8 ? A PGM 101 ? 'WRONG HAND' . 37 19 C2 ? A PGM 101 ? 'WRONG HAND' . 38 19 C8 ? A PGM 101 ? 'WRONG HAND' . 39 20 C2 ? A PGM 101 ? 'WRONG HAND' . 40 20 C8 ? A PGM 101 ? 'WRONG HAND' . # _pdbx_audit_support.funding_organization 'Russian Science Foundation' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 14-50-00131 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)]' _pdbx_entity_nonpoly.comp_id PGM #